Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3514

Experiment: m.b. Lomefloxacin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3513 and Echvi_3514 are separated by 216 nucleotidesEchvi_3514 and Echvi_3515 are separated by 101 nucleotidesEchvi_3515 and Echvi_3516 overlap by 11 nucleotides Echvi_3513: Echvi_3513 - Predicted P-loop ATPase and inactivated derivatives, at 4,162,818 to 4,164,032 _3513 Echvi_3514: Echvi_3514 - DNA primase (bacterial type), at 4,164,249 to 4,165,112 _3514 Echvi_3515: Echvi_3515 - Bacterial mobilisation protein (MobC)., at 4,165,214 to 4,165,558 _3515 Echvi_3516: Echvi_3516 - Relaxase/Mobilisation nuclease domain., at 4,165,548 to 4,166,723 _3516 Position (kb) 4164 4165 4166Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4163.250 kb on + strand, within Echvi_3513at 4163.251 kb on - strand, within Echvi_3513at 4163.251 kb on - strand, within Echvi_3513at 4163.343 kb on + strand, within Echvi_3513at 4163.343 kb on + strand, within Echvi_3513at 4163.344 kb on - strand, within Echvi_3513at 4163.346 kb on + strand, within Echvi_3513at 4163.346 kb on + strand, within Echvi_3513at 4163.346 kb on + strand, within Echvi_3513at 4163.347 kb on - strand, within Echvi_3513at 4163.358 kb on - strand, within Echvi_3513at 4163.500 kb on - strand, within Echvi_3513at 4163.549 kb on + strand, within Echvi_3513at 4163.633 kb on + strand, within Echvi_3513at 4163.634 kb on - strand, within Echvi_3513at 4163.654 kb on + strand, within Echvi_3513at 4163.655 kb on - strand, within Echvi_3513at 4163.674 kb on - strand, within Echvi_3513at 4163.762 kb on + strand, within Echvi_3513at 4163.790 kb on + strand, within Echvi_3513at 4163.795 kb on + strand, within Echvi_3513at 4163.842 kb on + strand, within Echvi_3513at 4163.842 kb on + strand, within Echvi_3513at 4163.843 kb on - strand, within Echvi_3513at 4163.888 kb on - strand, within Echvi_3513at 4163.979 kb on + strandat 4163.979 kb on + strandat 4163.979 kb on + strandat 4163.979 kb on + strandat 4163.980 kb on - strandat 4163.980 kb on - strandat 4163.980 kb on - strandat 4163.980 kb on - strandat 4163.980 kb on - strandat 4164.012 kb on + strandat 4164.012 kb on + strandat 4164.021 kb on + strandat 4164.036 kb on + strandat 4164.036 kb on + strandat 4164.047 kb on - strandat 4164.052 kb on + strandat 4164.056 kb on - strandat 4164.080 kb on - strandat 4164.089 kb on + strandat 4164.113 kb on + strandat 4164.114 kb on - strandat 4164.137 kb on + strandat 4164.137 kb on + strandat 4164.137 kb on + strandat 4164.137 kb on + strandat 4164.137 kb on + strandat 4164.191 kb on + strandat 4164.192 kb on - strandat 4164.194 kb on + strandat 4164.194 kb on + strandat 4164.195 kb on - strandat 4164.195 kb on - strandat 4164.195 kb on - strandat 4164.195 kb on - strandat 4164.198 kb on + strandat 4164.198 kb on + strandat 4164.199 kb on - strandat 4164.199 kb on - strandat 4164.199 kb on - strandat 4164.199 kb on - strandat 4164.211 kb on - strandat 4164.236 kb on + strandat 4164.237 kb on - strandat 4164.246 kb on - strandat 4164.246 kb on - strandat 4164.336 kb on + strand, within Echvi_3514at 4164.336 kb on + strand, within Echvi_3514at 4164.337 kb on - strand, within Echvi_3514at 4164.337 kb on - strand, within Echvi_3514at 4164.368 kb on + strand, within Echvi_3514at 4164.369 kb on - strand, within Echvi_3514at 4164.381 kb on - strand, within Echvi_3514at 4164.403 kb on + strand, within Echvi_3514at 4164.404 kb on - strand, within Echvi_3514at 4164.404 kb on - strand, within Echvi_3514at 4164.404 kb on - strand, within Echvi_3514at 4164.499 kb on - strand, within Echvi_3514at 4164.499 kb on - strand, within Echvi_3514at 4164.510 kb on - strand, within Echvi_3514at 4164.510 kb on - strand, within Echvi_3514at 4164.510 kb on - strand, within Echvi_3514at 4164.574 kb on + strand, within Echvi_3514at 4164.681 kb on + strand, within Echvi_3514at 4164.682 kb on - strand, within Echvi_3514at 4164.684 kb on + strand, within Echvi_3514at 4164.691 kb on + strand, within Echvi_3514at 4164.705 kb on + strand, within Echvi_3514at 4164.757 kb on - strand, within Echvi_3514at 4164.785 kb on + strand, within Echvi_3514at 4164.785 kb on + strand, within Echvi_3514at 4164.786 kb on - strand, within Echvi_3514at 4164.786 kb on - strand, within Echvi_3514at 4164.786 kb on - strand, within Echvi_3514at 4164.789 kb on + strand, within Echvi_3514at 4164.789 kb on + strand, within Echvi_3514at 4164.789 kb on + strand, within Echvi_3514at 4164.790 kb on - strand, within Echvi_3514at 4164.790 kb on - strand, within Echvi_3514at 4164.790 kb on - strand, within Echvi_3514at 4164.790 kb on - strand, within Echvi_3514at 4164.790 kb on - strand, within Echvi_3514at 4164.935 kb on + strand, within Echvi_3514at 4164.935 kb on + strand, within Echvi_3514at 4164.980 kb on - strand, within Echvi_3514at 4164.980 kb on - strand, within Echvi_3514at 4165.058 kb on + strandat 4165.124 kb on - strandat 4165.254 kb on + strand, within Echvi_3515at 4165.254 kb on + strand, within Echvi_3515at 4165.261 kb on + strand, within Echvi_3515at 4165.262 kb on - strand, within Echvi_3515at 4165.306 kb on - strand, within Echvi_3515at 4165.406 kb on + strand, within Echvi_3515at 4165.406 kb on + strand, within Echvi_3515at 4165.407 kb on - strand, within Echvi_3515at 4165.436 kb on - strand, within Echvi_3515at 4165.664 kb on + strandat 4165.665 kb on - strandat 4165.665 kb on - strandat 4165.713 kb on - strand, within Echvi_3516at 4165.740 kb on + strand, within Echvi_3516at 4165.741 kb on - strand, within Echvi_3516at 4165.741 kb on - strand, within Echvi_3516at 4165.741 kb on - strand, within Echvi_3516at 4165.813 kb on - strand, within Echvi_3516at 4165.845 kb on + strand, within Echvi_3516at 4166.002 kb on + strand, within Echvi_3516at 4166.003 kb on - strand, within Echvi_3516at 4166.003 kb on - strand, within Echvi_3516at 4166.022 kb on - strand, within Echvi_3516

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM
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4,163,250 + Echvi_3513 0.36 -2.2
4,163,251 - Echvi_3513 0.36 +1.0
4,163,251 - Echvi_3513 0.36 -0.3
4,163,343 + Echvi_3513 0.43 +0.7
4,163,343 + Echvi_3513 0.43 +0.2
4,163,344 - Echvi_3513 0.43 -0.8
4,163,346 + Echvi_3513 0.43 +0.1
4,163,346 + Echvi_3513 0.43 -0.6
4,163,346 + Echvi_3513 0.43 -0.0
4,163,347 - Echvi_3513 0.44 +0.4
4,163,358 - Echvi_3513 0.44 -0.5
4,163,500 - Echvi_3513 0.56 +1.4
4,163,549 + Echvi_3513 0.60 -0.4
4,163,633 + Echvi_3513 0.67 -0.1
4,163,634 - Echvi_3513 0.67 -0.7
4,163,654 + Echvi_3513 0.69 +0.2
4,163,655 - Echvi_3513 0.69 +1.0
4,163,674 - Echvi_3513 0.70 -0.1
4,163,762 + Echvi_3513 0.78 +0.1
4,163,790 + Echvi_3513 0.80 +0.5
4,163,795 + Echvi_3513 0.80 -0.6
4,163,842 + Echvi_3513 0.84 +0.2
4,163,842 + Echvi_3513 0.84 -0.4
4,163,843 - Echvi_3513 0.84 -0.1
4,163,888 - Echvi_3513 0.88 -0.4
4,163,979 + +0.1
4,163,979 + -2.1
4,163,979 + +0.4
4,163,979 + -2.7
4,163,980 - +0.5
4,163,980 - -2.4
4,163,980 - -0.0
4,163,980 - -0.4
4,163,980 - -0.6
4,164,012 + -0.8
4,164,012 + -1.3
4,164,021 + -0.3
4,164,036 + +0.6
4,164,036 + +2.0
4,164,047 - +1.8
4,164,052 + +0.0
4,164,056 - -0.0
4,164,080 - -1.5
4,164,089 + +0.5
4,164,113 + -0.4
4,164,114 - +1.4
4,164,137 + +0.7
4,164,137 + +1.2
4,164,137 + -0.2
4,164,137 + -0.5
4,164,137 + -1.1
4,164,191 + -0.0
4,164,192 - +0.7
4,164,194 + -1.8
4,164,194 + -0.3
4,164,195 - -1.3
4,164,195 - +1.1
4,164,195 - +1.3
4,164,195 - +1.6
4,164,198 + -2.3
4,164,198 + -2.0
4,164,199 - +0.1
4,164,199 - +0.4
4,164,199 - -0.8
4,164,199 - -0.8
4,164,211 - +0.3
4,164,236 + +0.7
4,164,237 - +1.6
4,164,246 - -0.2
4,164,246 - +1.3
4,164,336 + Echvi_3514 0.10 -0.2
4,164,336 + Echvi_3514 0.10 +2.4
4,164,337 - Echvi_3514 0.10 +1.5
4,164,337 - Echvi_3514 0.10 -2.2
4,164,368 + Echvi_3514 0.14 +0.7
4,164,369 - Echvi_3514 0.14 -1.3
4,164,381 - Echvi_3514 0.15 +1.6
4,164,403 + Echvi_3514 0.18 -0.8
4,164,404 - Echvi_3514 0.18 +0.3
4,164,404 - Echvi_3514 0.18 +0.6
4,164,404 - Echvi_3514 0.18 -1.5
4,164,499 - Echvi_3514 0.29 +0.5
4,164,499 - Echvi_3514 0.29 -1.1
4,164,510 - Echvi_3514 0.30 -0.3
4,164,510 - Echvi_3514 0.30 +2.6
4,164,510 - Echvi_3514 0.30 +0.8
4,164,574 + Echvi_3514 0.38 -0.6
4,164,681 + Echvi_3514 0.50 +0.6
4,164,682 - Echvi_3514 0.50 +0.3
4,164,684 + Echvi_3514 0.50 +0.2
4,164,691 + Echvi_3514 0.51 -0.4
4,164,705 + Echvi_3514 0.53 +1.0
4,164,757 - Echvi_3514 0.59 +1.6
4,164,785 + Echvi_3514 0.62 +1.2
4,164,785 + Echvi_3514 0.62 -0.2
4,164,786 - Echvi_3514 0.62 -2.2
4,164,786 - Echvi_3514 0.62 -0.4
4,164,786 - Echvi_3514 0.62 -1.0
4,164,789 + Echvi_3514 0.62 +1.1
4,164,789 + Echvi_3514 0.62 -0.2
4,164,789 + Echvi_3514 0.62 +1.1
4,164,790 - Echvi_3514 0.63 -0.0
4,164,790 - Echvi_3514 0.63 -0.3
4,164,790 - Echvi_3514 0.63 -0.9
4,164,790 - Echvi_3514 0.63 +0.2
4,164,790 - Echvi_3514 0.63 -1.0
4,164,935 + Echvi_3514 0.79 -0.8
4,164,935 + Echvi_3514 0.79 -0.4
4,164,980 - Echvi_3514 0.85 +0.8
4,164,980 - Echvi_3514 0.85 -0.2
4,165,058 + -0.8
4,165,124 - -0.2
4,165,254 + Echvi_3515 0.12 +0.8
4,165,254 + Echvi_3515 0.12 +1.3
4,165,261 + Echvi_3515 0.14 +0.0
4,165,262 - Echvi_3515 0.14 +0.1
4,165,306 - Echvi_3515 0.27 -1.7
4,165,406 + Echvi_3515 0.56 +0.3
4,165,406 + Echvi_3515 0.56 +1.1
4,165,407 - Echvi_3515 0.56 +0.8
4,165,436 - Echvi_3515 0.64 +1.6
4,165,664 + +0.5
4,165,665 - -0.8
4,165,665 - -1.7
4,165,713 - Echvi_3516 0.14 +1.2
4,165,740 + Echvi_3516 0.16 +0.6
4,165,741 - Echvi_3516 0.16 -1.8
4,165,741 - Echvi_3516 0.16 +0.5
4,165,741 - Echvi_3516 0.16 -2.8
4,165,813 - Echvi_3516 0.23 +0.6
4,165,845 + Echvi_3516 0.25 +0.2
4,166,002 + Echvi_3516 0.39 -1.3
4,166,003 - Echvi_3516 0.39 +1.0
4,166,003 - Echvi_3516 0.39 +0.1
4,166,022 - Echvi_3516 0.40 -0.2

Or see this region's nucleotide sequence