Experiment: m.b. Lomefloxacin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2328 and Echvi_2329 are separated by 102 nucleotides Echvi_2329 and Echvi_2330 are separated by 40 nucleotides Echvi_2330 and Echvi_2331 are separated by 46 nucleotides Echvi_2331 and Echvi_2332 are separated by 3 nucleotides
Echvi_2328: Echvi_2328 - Nucleoside-diphosphate-sugar epimerases, at 2,764,264 to 2,765,304
_2328
Echvi_2329: Echvi_2329 - dTDP-glucose 4,6-dehydratase, at 2,765,407 to 2,766,453
_2329
Echvi_2330: Echvi_2330 - hypothetical protein, at 2,766,494 to 2,766,592
_2330
Echvi_2331: Echvi_2331 - Periplasmic protein involved in polysaccharide export, at 2,766,639 to 2,767,430
_2331
Echvi_2332: Echvi_2332 - capsular exopolysaccharide family, at 2,767,434 to 2,769,875
_2332
Position (kb)
2765
2766
2767 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2764.548 kb on - strand, within Echvi_2328 at 2764.574 kb on + strand, within Echvi_2328 at 2764.574 kb on + strand, within Echvi_2328 at 2764.575 kb on - strand, within Echvi_2328 at 2764.580 kb on - strand, within Echvi_2328 at 2764.603 kb on + strand, within Echvi_2328 at 2764.603 kb on + strand, within Echvi_2328 at 2764.604 kb on - strand, within Echvi_2328 at 2764.607 kb on + strand, within Echvi_2328 at 2764.607 kb on + strand, within Echvi_2328 at 2764.608 kb on - strand, within Echvi_2328 at 2764.608 kb on - strand, within Echvi_2328 at 2764.608 kb on - strand, within Echvi_2328 at 2764.608 kb on - strand, within Echvi_2328 at 2764.608 kb on - strand, within Echvi_2328 at 2764.608 kb on - strand, within Echvi_2328 at 2764.608 kb on - strand, within Echvi_2328 at 2764.617 kb on + strand, within Echvi_2328 at 2764.679 kb on - strand, within Echvi_2328 at 2764.697 kb on + strand, within Echvi_2328 at 2764.698 kb on - strand, within Echvi_2328 at 2764.699 kb on + strand, within Echvi_2328 at 2764.700 kb on - strand, within Echvi_2328 at 2764.755 kb on - strand, within Echvi_2328 at 2764.762 kb on + strand, within Echvi_2328 at 2764.762 kb on + strand, within Echvi_2328 at 2764.804 kb on + strand, within Echvi_2328 at 2764.805 kb on - strand, within Echvi_2328 at 2764.805 kb on - strand, within Echvi_2328 at 2764.805 kb on - strand, within Echvi_2328 at 2764.814 kb on + strand, within Echvi_2328 at 2764.814 kb on + strand, within Echvi_2328 at 2764.814 kb on + strand, within Echvi_2328 at 2764.815 kb on - strand, within Echvi_2328 at 2764.815 kb on - strand, within Echvi_2328 at 2764.815 kb on - strand, within Echvi_2328 at 2764.815 kb on - strand, within Echvi_2328 at 2764.816 kb on + strand, within Echvi_2328 at 2764.827 kb on + strand, within Echvi_2328 at 2764.830 kb on + strand, within Echvi_2328 at 2764.855 kb on + strand, within Echvi_2328 at 2764.891 kb on - strand, within Echvi_2328 at 2764.905 kb on + strand, within Echvi_2328 at 2764.906 kb on - strand, within Echvi_2328 at 2764.931 kb on + strand, within Echvi_2328 at 2764.935 kb on + strand, within Echvi_2328 at 2764.936 kb on - strand, within Echvi_2328 at 2764.936 kb on - strand, within Echvi_2328 at 2764.939 kb on + strand, within Echvi_2328 at 2765.037 kb on + strand, within Echvi_2328 at 2765.037 kb on + strand, within Echvi_2328 at 2765.038 kb on - strand, within Echvi_2328 at 2765.038 kb on - strand, within Echvi_2328 at 2765.062 kb on + strand, within Echvi_2328 at 2765.062 kb on + strand, within Echvi_2328 at 2765.064 kb on + strand, within Echvi_2328 at 2765.073 kb on + strand, within Echvi_2328 at 2765.073 kb on + strand, within Echvi_2328 at 2765.089 kb on - strand, within Echvi_2328 at 2765.139 kb on + strand, within Echvi_2328 at 2765.139 kb on + strand, within Echvi_2328 at 2765.195 kb on - strand, within Echvi_2328 at 2765.195 kb on - strand, within Echvi_2328 at 2765.230 kb on + strand at 2765.231 kb on - strand at 2765.231 kb on - strand at 2765.250 kb on - strand at 2765.291 kb on - strand at 2765.301 kb on - strand at 2765.302 kb on + strand at 2765.302 kb on + strand at 2765.303 kb on - strand at 2765.315 kb on + strand at 2765.315 kb on + strand at 2765.316 kb on - strand at 2765.347 kb on - strand at 2765.386 kb on + strand at 2765.393 kb on + strand at 2765.393 kb on + strand at 2765.393 kb on + strand at 2765.393 kb on + strand at 2765.394 kb on - strand at 2765.394 kb on - strand at 2765.394 kb on - strand at 2765.394 kb on - strand at 2765.394 kb on - strand at 2765.399 kb on + strand at 2766.434 kb on - strand at 2766.489 kb on + strand at 2766.541 kb on + strand, within Echvi_2330 at 2766.543 kb on + strand, within Echvi_2330 at 2766.544 kb on - strand, within Echvi_2330 at 2766.548 kb on + strand, within Echvi_2330 at 2766.571 kb on + strand, within Echvi_2330 at 2766.572 kb on - strand, within Echvi_2330 at 2766.579 kb on + strand, within Echvi_2330 at 2766.581 kb on + strand, within Echvi_2330 at 2766.593 kb on + strand at 2766.596 kb on - strand at 2766.610 kb on + strand at 2766.610 kb on + strand at 2766.610 kb on + strand at 2766.613 kb on + strand at 2766.613 kb on + strand at 2766.613 kb on + strand at 2766.613 kb on + strand at 2766.614 kb on - strand at 2766.614 kb on - strand at 2766.614 kb on - strand at 2766.643 kb on + strand at 2766.646 kb on + strand at 2766.646 kb on + strand at 2766.646 kb on + strand at 2766.690 kb on - strand at 2766.690 kb on - strand at 2766.702 kb on + strand at 2766.766 kb on + strand, within Echvi_2331 at 2766.766 kb on + strand, within Echvi_2331 at 2766.771 kb on + strand, within Echvi_2331 at 2766.772 kb on - strand, within Echvi_2331 at 2766.777 kb on + strand, within Echvi_2331 at 2766.778 kb on - strand, within Echvi_2331 at 2766.778 kb on - strand at 2766.778 kb on - strand, within Echvi_2331 at 2766.779 kb on + strand, within Echvi_2331 at 2766.780 kb on - strand, within Echvi_2331 at 2766.780 kb on - strand, within Echvi_2331 at 2766.822 kb on - strand, within Echvi_2331 at 2766.844 kb on + strand, within Echvi_2331 at 2766.845 kb on - strand, within Echvi_2331 at 2766.845 kb on - strand, within Echvi_2331 at 2766.890 kb on + strand, within Echvi_2331 at 2766.891 kb on - strand, within Echvi_2331 at 2766.893 kb on + strand, within Echvi_2331 at 2766.894 kb on - strand, within Echvi_2331 at 2766.932 kb on + strand, within Echvi_2331 at 2766.956 kb on + strand, within Echvi_2331 at 2766.956 kb on + strand, within Echvi_2331 at 2766.956 kb on + strand, within Echvi_2331 at 2766.956 kb on + strand, within Echvi_2331 at 2766.956 kb on + strand, within Echvi_2331 at 2767.054 kb on + strand, within Echvi_2331 at 2767.073 kb on + strand, within Echvi_2331 at 2767.075 kb on + strand, within Echvi_2331 at 2767.076 kb on - strand, within Echvi_2331 at 2767.082 kb on + strand, within Echvi_2331 at 2767.083 kb on - strand, within Echvi_2331 at 2767.113 kb on - strand, within Echvi_2331 at 2767.113 kb on - strand, within Echvi_2331 at 2767.125 kb on + strand, within Echvi_2331 at 2767.126 kb on - strand, within Echvi_2331 at 2767.126 kb on - strand, within Echvi_2331 at 2767.139 kb on + strand, within Echvi_2331 at 2767.211 kb on + strand, within Echvi_2331 at 2767.254 kb on - strand, within Echvi_2331 at 2767.290 kb on - strand, within Echvi_2331 at 2767.305 kb on - strand, within Echvi_2331 at 2767.309 kb on + strand, within Echvi_2331 at 2767.310 kb on - strand, within Echvi_2331 at 2767.310 kb on - strand, within Echvi_2331 at 2767.315 kb on + strand, within Echvi_2331 at 2767.316 kb on - strand, within Echvi_2331 at 2767.364 kb on + strand at 2767.453 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM remove 2,764,548 - Echvi_2328 0.27 +1.3 2,764,574 + Echvi_2328 0.30 -0.1 2,764,574 + Echvi_2328 0.30 -0.7 2,764,575 - Echvi_2328 0.30 -1.4 2,764,580 - Echvi_2328 0.30 +0.5 2,764,603 + Echvi_2328 0.33 -0.1 2,764,603 + Echvi_2328 0.33 -0.6 2,764,604 - Echvi_2328 0.33 +0.7 2,764,607 + Echvi_2328 0.33 +0.7 2,764,607 + Echvi_2328 0.33 -0.7 2,764,608 - Echvi_2328 0.33 -1.1 2,764,608 - Echvi_2328 0.33 -1.7 2,764,608 - Echvi_2328 0.33 -0.0 2,764,608 - Echvi_2328 0.33 +0.1 2,764,608 - Echvi_2328 0.33 +1.0 2,764,608 - Echvi_2328 0.33 -0.3 2,764,608 - Echvi_2328 0.33 +0.4 2,764,617 + Echvi_2328 0.34 +0.9 2,764,679 - Echvi_2328 0.40 -1.0 2,764,697 + Echvi_2328 0.42 +0.8 2,764,698 - Echvi_2328 0.42 -1.5 2,764,699 + Echvi_2328 0.42 -0.2 2,764,700 - Echvi_2328 0.42 +0.3 2,764,755 - Echvi_2328 0.47 -0.3 2,764,762 + Echvi_2328 0.48 -0.0 2,764,762 + Echvi_2328 0.48 -0.5 2,764,804 + Echvi_2328 0.52 +0.3 2,764,805 - Echvi_2328 0.52 +0.6 2,764,805 - Echvi_2328 0.52 -0.3 2,764,805 - Echvi_2328 0.52 +0.3 2,764,814 + Echvi_2328 0.53 -0.5 2,764,814 + Echvi_2328 0.53 -0.5 2,764,814 + Echvi_2328 0.53 -0.0 2,764,815 - Echvi_2328 0.53 -1.2 2,764,815 - Echvi_2328 0.53 -0.0 2,764,815 - Echvi_2328 0.53 -0.5 2,764,815 - Echvi_2328 0.53 +0.7 2,764,816 + Echvi_2328 0.53 +0.3 2,764,827 + Echvi_2328 0.54 +0.3 2,764,830 + Echvi_2328 0.54 +0.2 2,764,855 + Echvi_2328 0.57 -0.0 2,764,891 - Echvi_2328 0.60 -1.5 2,764,905 + Echvi_2328 0.62 -1.4 2,764,906 - Echvi_2328 0.62 -0.7 2,764,931 + Echvi_2328 0.64 -1.4 2,764,935 + Echvi_2328 0.64 +0.3 2,764,936 - Echvi_2328 0.65 +0.5 2,764,936 - Echvi_2328 0.65 +0.6 2,764,939 + Echvi_2328 0.65 -0.5 2,765,037 + Echvi_2328 0.74 -0.0 2,765,037 + Echvi_2328 0.74 -0.6 2,765,038 - Echvi_2328 0.74 +0.7 2,765,038 - Echvi_2328 0.74 -1.7 2,765,062 + Echvi_2328 0.77 -0.2 2,765,062 + Echvi_2328 0.77 +1.8 2,765,064 + Echvi_2328 0.77 -0.6 2,765,073 + Echvi_2328 0.78 -1.4 2,765,073 + Echvi_2328 0.78 +0.8 2,765,089 - Echvi_2328 0.79 +0.1 2,765,139 + Echvi_2328 0.84 -0.3 2,765,139 + Echvi_2328 0.84 +1.0 2,765,195 - Echvi_2328 0.89 -0.5 2,765,195 - Echvi_2328 0.89 +1.2 2,765,230 + +0.4 2,765,231 - -1.6 2,765,231 - -1.5 2,765,250 - -3.1 2,765,291 - +0.5 2,765,301 - +1.0 2,765,302 + -1.5 2,765,302 + -0.6 2,765,303 - +0.3 2,765,315 + -0.8 2,765,315 + +1.1 2,765,316 - -0.1 2,765,347 - -1.0 2,765,386 + +0.1 2,765,393 + -0.3 2,765,393 + +0.6 2,765,393 + +0.1 2,765,393 + -0.8 2,765,394 - -1.4 2,765,394 - -1.0 2,765,394 - -0.3 2,765,394 - -0.0 2,765,394 - -1.8 2,765,399 + +1.1 2,766,434 - +1.1 2,766,489 + +1.3 2,766,541 + Echvi_2330 0.47 +0.7 2,766,543 + Echvi_2330 0.49 -0.5 2,766,544 - Echvi_2330 0.51 +1.4 2,766,548 + Echvi_2330 0.55 +2.3 2,766,571 + Echvi_2330 0.78 +1.7 2,766,572 - Echvi_2330 0.79 -0.3 2,766,579 + Echvi_2330 0.86 +0.1 2,766,581 + Echvi_2330 0.88 -1.4 2,766,593 + -0.3 2,766,596 - +0.3 2,766,610 + +2.1 2,766,610 + -0.3 2,766,610 + +0.7 2,766,613 + +0.3 2,766,613 + -0.8 2,766,613 + -0.0 2,766,613 + -1.5 2,766,614 - -0.1 2,766,614 - -1.9 2,766,614 - -0.3 2,766,643 + -0.0 2,766,646 + -0.2 2,766,646 + -0.5 2,766,646 + -0.1 2,766,690 - +0.2 2,766,690 - +0.6 2,766,702 + -1.0 2,766,766 + Echvi_2331 0.16 +1.0 2,766,766 + Echvi_2331 0.16 +0.7 2,766,771 + Echvi_2331 0.17 +0.3 2,766,772 - Echvi_2331 0.17 +0.4 2,766,777 + Echvi_2331 0.17 -0.8 2,766,778 - Echvi_2331 0.18 -1.6 2,766,778 - +1.3 2,766,778 - Echvi_2331 0.18 +0.9 2,766,779 + Echvi_2331 0.18 +1.1 2,766,780 - Echvi_2331 0.18 +1.2 2,766,780 - Echvi_2331 0.18 +0.3 2,766,822 - Echvi_2331 0.23 -0.3 2,766,844 + Echvi_2331 0.26 +0.7 2,766,845 - Echvi_2331 0.26 -0.3 2,766,845 - Echvi_2331 0.26 -0.7 2,766,890 + Echvi_2331 0.32 -0.7 2,766,891 - Echvi_2331 0.32 -2.3 2,766,893 + Echvi_2331 0.32 -0.8 2,766,894 - Echvi_2331 0.32 -0.8 2,766,932 + Echvi_2331 0.37 -0.7 2,766,956 + Echvi_2331 0.40 -2.3 2,766,956 + Echvi_2331 0.40 -0.3 2,766,956 + Echvi_2331 0.40 -0.5 2,766,956 + Echvi_2331 0.40 -0.6 2,766,956 + Echvi_2331 0.40 -1.0 2,767,054 + Echvi_2331 0.52 +0.0 2,767,073 + Echvi_2331 0.55 -1.0 2,767,075 + Echvi_2331 0.55 +0.0 2,767,076 - Echvi_2331 0.55 -1.1 2,767,082 + Echvi_2331 0.56 +2.6 2,767,083 - Echvi_2331 0.56 +0.2 2,767,113 - Echvi_2331 0.60 +0.1 2,767,113 - Echvi_2331 0.60 +0.3 2,767,125 + Echvi_2331 0.61 -1.8 2,767,126 - Echvi_2331 0.61 -0.7 2,767,126 - Echvi_2331 0.61 -1.1 2,767,139 + Echvi_2331 0.63 -1.0 2,767,211 + Echvi_2331 0.72 +0.4 2,767,254 - Echvi_2331 0.78 +0.2 2,767,290 - Echvi_2331 0.82 +0.4 2,767,305 - Echvi_2331 0.84 +1.0 2,767,309 + Echvi_2331 0.85 -1.6 2,767,310 - Echvi_2331 0.85 -0.2 2,767,310 - Echvi_2331 0.85 +0.2 2,767,315 + Echvi_2331 0.85 -1.7 2,767,316 - Echvi_2331 0.85 -0.5 2,767,364 + +0.4 2,767,453 + -1.4
Or see this region's nucleotide sequence