Experiment: m.b. Lomefloxacin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0086 and Echvi_0087 are separated by 32 nucleotides Echvi_0087 and Echvi_0088 are separated by 84 nucleotides
Echvi_0086: Echvi_0086 - Glycosyltransferases, probably involved in cell wall biogenesis, at 86,080 to 87,198
_0086
Echvi_0087: Echvi_0087 - crossover junction endodeoxyribonuclease RuvC, at 87,231 to 87,800
_0087
Echvi_0088: Echvi_0088 - thiamine-monophosphate kinase, at 87,885 to 88,934
_0088
Position (kb) 87
88 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 86.236 kb on + strand, within Echvi_0086 at 86.239 kb on + strand, within Echvi_0086 at 86.245 kb on + strand, within Echvi_0086 at 86.256 kb on - strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.257 kb on + strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.258 kb on - strand, within Echvi_0086 at 86.279 kb on - strand, within Echvi_0086 at 86.338 kb on + strand, within Echvi_0086 at 86.471 kb on + strand, within Echvi_0086 at 86.515 kb on + strand, within Echvi_0086 at 86.519 kb on + strand, within Echvi_0086 at 86.519 kb on + strand, within Echvi_0086 at 86.520 kb on - strand, within Echvi_0086 at 86.520 kb on - strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.566 kb on + strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.567 kb on - strand, within Echvi_0086 at 86.569 kb on - strand, within Echvi_0086 at 86.632 kb on - strand, within Echvi_0086 at 86.823 kb on + strand, within Echvi_0086 at 86.824 kb on - strand, within Echvi_0086 at 86.857 kb on - strand, within Echvi_0086 at 86.895 kb on + strand, within Echvi_0086 at 86.896 kb on - strand, within Echvi_0086 at 86.896 kb on - strand, within Echvi_0086 at 86.902 kb on - strand, within Echvi_0086 at 86.977 kb on - strand, within Echvi_0086 at 87.136 kb on + strand at 87.136 kb on + strand at 87.137 kb on - strand at 87.137 kb on - strand at 87.137 kb on - strand at 87.229 kb on + strand at 87.230 kb on - strand at 87.242 kb on - strand at 87.856 kb on + strand at 87.856 kb on + strand at 87.857 kb on - strand at 87.857 kb on - strand at 87.863 kb on + strand at 87.880 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM remove 86,236 + Echvi_0086 0.14 +3.1 86,239 + Echvi_0086 0.14 -0.3 86,245 + Echvi_0086 0.15 +0.1 86,256 - Echvi_0086 0.16 +2.5 86,257 + Echvi_0086 0.16 -1.1 86,257 + Echvi_0086 0.16 +1.6 86,257 + Echvi_0086 0.16 -0.8 86,258 - Echvi_0086 0.16 +1.8 86,258 - Echvi_0086 0.16 +1.1 86,258 - Echvi_0086 0.16 +1.6 86,279 - Echvi_0086 0.18 +3.8 86,338 + Echvi_0086 0.23 -0.5 86,471 + Echvi_0086 0.35 -0.7 86,515 + Echvi_0086 0.39 +0.6 86,519 + Echvi_0086 0.39 -0.7 86,519 + Echvi_0086 0.39 +1.4 86,520 - Echvi_0086 0.39 +1.4 86,520 - Echvi_0086 0.39 -0.3 86,566 + Echvi_0086 0.43 +0.1 86,566 + Echvi_0086 0.43 +0.3 86,566 + Echvi_0086 0.43 -0.3 86,567 - Echvi_0086 0.44 +1.8 86,567 - Echvi_0086 0.44 +0.8 86,567 - Echvi_0086 0.44 -0.5 86,567 - Echvi_0086 0.44 +1.0 86,567 - Echvi_0086 0.44 +2.7 86,567 - Echvi_0086 0.44 +1.6 86,567 - Echvi_0086 0.44 -0.7 86,569 - Echvi_0086 0.44 +2.0 86,632 - Echvi_0086 0.49 +1.6 86,823 + Echvi_0086 0.66 +0.9 86,824 - Echvi_0086 0.66 +1.3 86,857 - Echvi_0086 0.69 +0.2 86,895 + Echvi_0086 0.73 -1.6 86,896 - Echvi_0086 0.73 +0.6 86,896 - Echvi_0086 0.73 +0.1 86,902 - Echvi_0086 0.73 +1.5 86,977 - Echvi_0086 0.80 +1.1 87,136 + -0.0 87,136 + -1.3 87,137 - +0.5 87,137 - +0.7 87,137 - +0.9 87,229 + +0.1 87,230 - -2.3 87,242 - -0.7 87,856 + +0.7 87,856 + +1.5 87,857 - -0.2 87,857 - +0.1 87,863 + -1.7 87,880 - -0.3
Or see this region's nucleotide sequence