Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0086

Experiment: m.b. Lomefloxacin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0084 and Echvi_0085 are separated by 11 nucleotidesEchvi_0085 and Echvi_0086 are separated by 49 nucleotidesEchvi_0086 and Echvi_0087 are separated by 32 nucleotidesEchvi_0087 and Echvi_0088 are separated by 84 nucleotides Echvi_0084: Echvi_0084 - Serine phosphatase RsbU, regulator of sigma subunit, at 84,556 to 85,767 _0084 Echvi_0085: Echvi_0085 - hypothetical protein, at 85,779 to 86,030 _0085 Echvi_0086: Echvi_0086 - Glycosyltransferases, probably involved in cell wall biogenesis, at 86,080 to 87,198 _0086 Echvi_0087: Echvi_0087 - crossover junction endodeoxyribonuclease RuvC, at 87,231 to 87,800 _0087 Echvi_0088: Echvi_0088 - thiamine-monophosphate kinase, at 87,885 to 88,934 _0088 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 85.158 kb on - strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.176 kb on + strand, within Echvi_0084at 85.179 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.245 kb on + strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.246 kb on - strand, within Echvi_0084at 85.253 kb on - strand, within Echvi_0084at 85.298 kb on - strand, within Echvi_0084at 85.344 kb on + strand, within Echvi_0084at 85.376 kb on - strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.408 kb on + strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.426 kb on - strand, within Echvi_0084at 85.432 kb on - strand, within Echvi_0084at 85.448 kb on + strand, within Echvi_0084at 85.452 kb on + strand, within Echvi_0084at 85.453 kb on - strand, within Echvi_0084at 85.473 kb on - strand, within Echvi_0084at 85.494 kb on + strand, within Echvi_0084at 85.607 kb on + strand, within Echvi_0084at 85.608 kb on - strand, within Echvi_0084at 85.626 kb on + strand, within Echvi_0084at 85.627 kb on - strand, within Echvi_0084at 85.647 kb on + strandat 85.660 kb on - strandat 85.729 kb on + strandat 85.730 kb on - strandat 85.787 kb on + strandat 85.787 kb on + strandat 85.788 kb on - strandat 85.828 kb on + strand, within Echvi_0085at 85.828 kb on + strand, within Echvi_0085at 85.829 kb on - strand, within Echvi_0085at 85.835 kb on + strand, within Echvi_0085at 85.835 kb on + strand, within Echvi_0085at 85.836 kb on - strand, within Echvi_0085at 85.836 kb on - strand, within Echvi_0085at 85.968 kb on + strand, within Echvi_0085at 85.969 kb on - strand, within Echvi_0085at 86.074 kb on + strandat 86.191 kb on + strandat 86.192 kb on - strand, within Echvi_0086at 86.199 kb on - strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.202 kb on + strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.203 kb on - strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.205 kb on + strand, within Echvi_0086at 86.229 kb on - strand, within Echvi_0086at 86.236 kb on + strand, within Echvi_0086at 86.239 kb on + strand, within Echvi_0086at 86.245 kb on + strand, within Echvi_0086at 86.256 kb on - strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.257 kb on + strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.258 kb on - strand, within Echvi_0086at 86.279 kb on - strand, within Echvi_0086at 86.338 kb on + strand, within Echvi_0086at 86.471 kb on + strand, within Echvi_0086at 86.515 kb on + strand, within Echvi_0086at 86.519 kb on + strand, within Echvi_0086at 86.519 kb on + strand, within Echvi_0086at 86.520 kb on - strand, within Echvi_0086at 86.520 kb on - strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.566 kb on + strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.567 kb on - strand, within Echvi_0086at 86.569 kb on - strand, within Echvi_0086at 86.632 kb on - strand, within Echvi_0086at 86.823 kb on + strand, within Echvi_0086at 86.824 kb on - strand, within Echvi_0086at 86.857 kb on - strand, within Echvi_0086at 86.895 kb on + strand, within Echvi_0086at 86.896 kb on - strand, within Echvi_0086at 86.896 kb on - strand, within Echvi_0086at 86.902 kb on - strand, within Echvi_0086at 86.977 kb on - strand, within Echvi_0086at 87.136 kb on + strandat 87.136 kb on + strandat 87.137 kb on - strandat 87.137 kb on - strandat 87.137 kb on - strandat 87.229 kb on + strandat 87.230 kb on - strandat 87.242 kb on - strandat 87.856 kb on + strandat 87.856 kb on + strandat 87.857 kb on - strandat 87.857 kb on - strandat 87.863 kb on + strandat 87.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM
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85,158 - Echvi_0084 0.50 -0.0
85,176 + Echvi_0084 0.51 -1.1
85,176 + Echvi_0084 0.51 +0.5
85,176 + Echvi_0084 0.51 +2.1
85,179 + Echvi_0084 0.51 -0.0
85,245 + Echvi_0084 0.57 +0.3
85,245 + Echvi_0084 0.57 +3.1
85,246 - Echvi_0084 0.57 -1.9
85,246 - Echvi_0084 0.57 +0.6
85,246 - Echvi_0084 0.57 -1.2
85,246 - Echvi_0084 0.57 +0.1
85,253 - Echvi_0084 0.58 -1.9
85,298 - Echvi_0084 0.61 +1.1
85,344 + Echvi_0084 0.65 -0.9
85,376 - Echvi_0084 0.68 +0.5
85,408 + Echvi_0084 0.70 -1.9
85,408 + Echvi_0084 0.70 +0.3
85,408 + Echvi_0084 0.70 -1.0
85,426 - Echvi_0084 0.72 -1.7
85,426 - Echvi_0084 0.72 +0.8
85,432 - Echvi_0084 0.72 -0.1
85,448 + Echvi_0084 0.74 -0.8
85,452 + Echvi_0084 0.74 -2.7
85,453 - Echvi_0084 0.74 +2.7
85,473 - Echvi_0084 0.76 -1.0
85,494 + Echvi_0084 0.77 -0.9
85,607 + Echvi_0084 0.87 -1.3
85,608 - Echvi_0084 0.87 -0.1
85,626 + Echvi_0084 0.88 -0.5
85,627 - Echvi_0084 0.88 -0.6
85,647 + -2.0
85,660 - +0.2
85,729 + +0.3
85,730 - -0.6
85,787 + -0.7
85,787 + -1.3
85,788 - +0.8
85,828 + Echvi_0085 0.19 -2.5
85,828 + Echvi_0085 0.19 -0.5
85,829 - Echvi_0085 0.20 -0.5
85,835 + Echvi_0085 0.22 +1.7
85,835 + Echvi_0085 0.22 -0.7
85,836 - Echvi_0085 0.23 -0.0
85,836 - Echvi_0085 0.23 -0.1
85,968 + Echvi_0085 0.75 -0.3
85,969 - Echvi_0085 0.75 -1.2
86,074 + +0.5
86,191 + -0.8
86,192 - Echvi_0086 0.10 +1.4
86,199 - Echvi_0086 0.11 +1.5
86,202 + Echvi_0086 0.11 -0.6
86,202 + Echvi_0086 0.11 +1.0
86,202 + Echvi_0086 0.11 -0.2
86,203 - Echvi_0086 0.11 +1.1
86,203 - Echvi_0086 0.11 +1.6
86,203 - Echvi_0086 0.11 +1.8
86,205 + Echvi_0086 0.11 -0.0
86,205 + Echvi_0086 0.11 +0.1
86,205 + Echvi_0086 0.11 -1.2
86,229 - Echvi_0086 0.13 +0.0
86,236 + Echvi_0086 0.14 +3.1
86,239 + Echvi_0086 0.14 -0.3
86,245 + Echvi_0086 0.15 +0.1
86,256 - Echvi_0086 0.16 +2.5
86,257 + Echvi_0086 0.16 -1.1
86,257 + Echvi_0086 0.16 +1.6
86,257 + Echvi_0086 0.16 -0.8
86,258 - Echvi_0086 0.16 +1.8
86,258 - Echvi_0086 0.16 +1.1
86,258 - Echvi_0086 0.16 +1.6
86,279 - Echvi_0086 0.18 +3.8
86,338 + Echvi_0086 0.23 -0.5
86,471 + Echvi_0086 0.35 -0.7
86,515 + Echvi_0086 0.39 +0.6
86,519 + Echvi_0086 0.39 -0.7
86,519 + Echvi_0086 0.39 +1.4
86,520 - Echvi_0086 0.39 +1.4
86,520 - Echvi_0086 0.39 -0.3
86,566 + Echvi_0086 0.43 +0.1
86,566 + Echvi_0086 0.43 +0.3
86,566 + Echvi_0086 0.43 -0.3
86,567 - Echvi_0086 0.44 +1.8
86,567 - Echvi_0086 0.44 +0.8
86,567 - Echvi_0086 0.44 -0.5
86,567 - Echvi_0086 0.44 +1.0
86,567 - Echvi_0086 0.44 +2.7
86,567 - Echvi_0086 0.44 +1.6
86,567 - Echvi_0086 0.44 -0.7
86,569 - Echvi_0086 0.44 +2.0
86,632 - Echvi_0086 0.49 +1.6
86,823 + Echvi_0086 0.66 +0.9
86,824 - Echvi_0086 0.66 +1.3
86,857 - Echvi_0086 0.69 +0.2
86,895 + Echvi_0086 0.73 -1.6
86,896 - Echvi_0086 0.73 +0.6
86,896 - Echvi_0086 0.73 +0.1
86,902 - Echvi_0086 0.73 +1.5
86,977 - Echvi_0086 0.80 +1.1
87,136 + -0.0
87,136 + -1.3
87,137 - +0.5
87,137 - +0.7
87,137 - +0.9
87,229 + +0.1
87,230 - -2.3
87,242 - -0.7
87,856 + +0.7
87,856 + +1.5
87,857 - -0.2
87,857 - +0.1
87,863 + -1.7
87,880 - -0.3

Or see this region's nucleotide sequence