Experiment: m.b. Lomefloxacin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0076 and Echvi_0077 are separated by 6 nucleotides Echvi_0077 and Echvi_0078 are separated by 61 nucleotides Echvi_0078 and Echvi_0079 are separated by 600 nucleotides Echvi_0079 and Echvi_0080 are separated by 207 nucleotides
Echvi_0076: Echvi_0076 - Biopolymer transport protein, at 78,229 to 78,861
_0076
Echvi_0077: Echvi_0077 - hypothetical protein, at 78,868 to 79,197
_0077
Echvi_0078: Echvi_0078 - Biopolymer transport proteins, at 79,259 to 80,074
_0078
Echvi_0079: Echvi_0079 - tRNA, at 80,675 to 80,765
_0079
Echvi_0080: Echvi_0080 - L-asparaginases, type I, at 80,973 to 82,049
_0080
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2 at 79.247 kb on - strand at 80.219 kb on - strand at 80.225 kb on + strand at 80.225 kb on + strand at 80.244 kb on + strand at 80.245 kb on - strand at 80.263 kb on - strand at 80.278 kb on + strand at 80.278 kb on + strand at 80.282 kb on + strand at 80.342 kb on + strand at 80.342 kb on + strand at 80.343 kb on - strand at 80.383 kb on + strand at 80.384 kb on - strand at 80.384 kb on - strand at 80.474 kb on - strand at 80.531 kb on + strand at 80.672 kb on + strand at 80.673 kb on - strand at 80.721 kb on - strand, within Echvi_0079 at 80.798 kb on - strand at 80.838 kb on + strand at 80.839 kb on - strand at 80.961 kb on - strand at 81.057 kb on + strand at 81.057 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM remove 79,247 - -1.0 80,219 - -0.1 80,225 + -0.0 80,225 + +0.4 80,244 + -1.8 80,245 - +1.8 80,263 - -0.3 80,278 + -1.1 80,278 + -0.0 80,282 + +1.1 80,342 + -2.0 80,342 + +1.1 80,343 - -0.5 80,383 + +0.8 80,384 - -0.3 80,384 - +0.0 80,474 - +0.9 80,531 + +0.9 80,672 + +0.5 80,673 - -1.2 80,721 - Echvi_0079 0.51 -1.6 80,798 - -0.0 80,838 + -1.0 80,839 - -0.3 80,961 - -0.8 81,057 + +0.2 81,057 + -1.2
Or see this region's nucleotide sequence