Strain Fitness in Pseudomonas sp. RS175 around PFR28_05009

Experiment: Fumarate (C) 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05007 and PFR28_05008 overlap by 1 nucleotidesPFR28_05008 and PFR28_05009 overlap by 4 nucleotidesPFR28_05009 and PFR28_05010 overlap by 4 nucleotidesPFR28_05010 and PFR28_05011 overlap by 4 nucleotides PFR28_05007: PFR28_05007 - Cell division protein FtsA, at 5,712,057 to 5,713,121 _05007 PFR28_05008: PFR28_05008 - hypothetical protein, at 5,713,121 to 5,713,687 _05008 PFR28_05009: PFR28_05009 - hypothetical protein, at 5,713,684 to 5,714,307 _05009 PFR28_05010: PFR28_05010 - hypothetical protein, at 5,714,304 to 5,714,849 _05010 PFR28_05011: PFR28_05011 - Type 3 secretion system secretin, at 5,714,846 to 5,716,918 _05011 Position (kb) 5713 5714 5715Strain fitness (log2 ratio) -2 -1 0 1 2at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.705 kb on + strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.706 kb on - strand, within PFR28_05007at 5712.707 kb on + strand, within PFR28_05007at 5712.822 kb on + strand, within PFR28_05007at 5712.910 kb on - strand, within PFR28_05007at 5712.910 kb on - strand, within PFR28_05007at 5713.020 kb on - strandat 5713.218 kb on + strand, within PFR28_05008at 5713.228 kb on - strand, within PFR28_05008at 5713.245 kb on - strand, within PFR28_05008at 5713.245 kb on - strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.460 kb on + strand, within PFR28_05008at 5713.461 kb on - strand, within PFR28_05008at 5713.461 kb on - strand, within PFR28_05008at 5713.647 kb on + strandat 5713.746 kb on + strandat 5713.823 kb on - strand, within PFR28_05009at 5713.823 kb on - strand, within PFR28_05009at 5713.823 kb on - strand, within PFR28_05009at 5713.881 kb on + strand, within PFR28_05009at 5713.882 kb on - strand, within PFR28_05009at 5713.882 kb on - strand, within PFR28_05009at 5713.882 kb on - strand, within PFR28_05009at 5714.104 kb on + strand, within PFR28_05009at 5714.105 kb on - strand, within PFR28_05009at 5714.105 kb on - strand, within PFR28_05009at 5714.144 kb on - strand, within PFR28_05009at 5714.275 kb on + strandat 5714.275 kb on + strandat 5714.276 kb on - strandat 5714.276 kb on - strandat 5714.276 kb on - strandat 5714.281 kb on + strandat 5714.281 kb on + strandat 5714.281 kb on + strandat 5714.282 kb on - strandat 5714.282 kb on - strandat 5714.282 kb on - strandat 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.394 kb on + strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.395 kb on - strand, within PFR28_05010at 5714.396 kb on + strand, within PFR28_05010at 5714.396 kb on + strand, within PFR28_05010at 5714.397 kb on - strand, within PFR28_05010at 5714.397 kb on - strand, within PFR28_05010at 5714.468 kb on + strand, within PFR28_05010at 5714.468 kb on + strand, within PFR28_05010at 5714.468 kb on + strand, within PFR28_05010at 5714.468 kb on + strand, within PFR28_05010at 5714.469 kb on - strand, within PFR28_05010at 5714.469 kb on - strand, within PFR28_05010at 5714.469 kb on - strand, within PFR28_05010at 5714.469 kb on - strand, within PFR28_05010at 5714.469 kb on - strand, within PFR28_05010at 5714.469 kb on - strand, within PFR28_05010at 5714.472 kb on + strand, within PFR28_05010at 5714.473 kb on - strand, within PFR28_05010at 5714.473 kb on - strand, within PFR28_05010at 5714.583 kb on + strand, within PFR28_05010at 5714.583 kb on + strand, within PFR28_05010at 5714.584 kb on - strand, within PFR28_05010at 5714.584 kb on - strand, within PFR28_05010at 5714.584 kb on - strand, within PFR28_05010at 5714.584 kb on - strand, within PFR28_05010at 5714.601 kb on - strand, within PFR28_05010at 5714.700 kb on + strand, within PFR28_05010at 5714.700 kb on + strand, within PFR28_05010at 5714.701 kb on - strand, within PFR28_05010at 5714.701 kb on - strand, within PFR28_05010at 5714.701 kb on - strand, within PFR28_05010at 5714.768 kb on - strand, within PFR28_05010at 5714.830 kb on + strandat 5714.830 kb on + strandat 5714.831 kb on - strandat 5715.008 kb on + strandat 5715.008 kb on + strandat 5715.009 kb on - strandat 5715.009 kb on - strandat 5715.009 kb on - strandat 5715.010 kb on + strandat 5715.010 kb on + strandat 5715.011 kb on - strandat 5715.011 kb on - strandat 5715.011 kb on - strandat 5715.136 kb on + strand, within PFR28_05011

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C) 20 mM
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5,712,705 + PFR28_05007 0.61 +0.4
5,712,705 + PFR28_05007 0.61 +0.4
5,712,705 + PFR28_05007 0.61 -0.8
5,712,705 + PFR28_05007 0.61 +0.1
5,712,705 + PFR28_05007 0.61 -1.2
5,712,705 + PFR28_05007 0.61 +1.6
5,712,705 + PFR28_05007 0.61 +0.3
5,712,705 + PFR28_05007 0.61 +1.1
5,712,705 + PFR28_05007 0.61 +0.0
5,712,705 + PFR28_05007 0.61 -1.2
5,712,706 - PFR28_05007 0.61 -1.1
5,712,706 - PFR28_05007 0.61 -0.6
5,712,706 - PFR28_05007 0.61 -1.3
5,712,706 - PFR28_05007 0.61 +0.8
5,712,706 - PFR28_05007 0.61 -0.5
5,712,706 - PFR28_05007 0.61 -0.3
5,712,706 - PFR28_05007 0.61 -1.1
5,712,706 - PFR28_05007 0.61 +0.0
5,712,706 - PFR28_05007 0.61 -0.4
5,712,706 - PFR28_05007 0.61 -0.5
5,712,706 - PFR28_05007 0.61 +0.2
5,712,707 + PFR28_05007 0.61 -0.2
5,712,822 + PFR28_05007 0.72 -1.1
5,712,910 - PFR28_05007 0.80 +0.8
5,712,910 - PFR28_05007 0.80 -0.1
5,713,020 - +0.2
5,713,218 + PFR28_05008 0.17 -0.1
5,713,228 - PFR28_05008 0.19 -0.6
5,713,245 - PFR28_05008 0.22 -1.1
5,713,245 - PFR28_05008 0.22 +0.1
5,713,460 + PFR28_05008 0.60 +0.3
5,713,460 + PFR28_05008 0.60 +0.6
5,713,460 + PFR28_05008 0.60 +1.1
5,713,460 + PFR28_05008 0.60 -0.6
5,713,460 + PFR28_05008 0.60 -0.1
5,713,461 - PFR28_05008 0.60 -2.1
5,713,461 - PFR28_05008 0.60 -0.9
5,713,647 + +0.8
5,713,746 + -0.2
5,713,823 - PFR28_05009 0.22 -0.1
5,713,823 - PFR28_05009 0.22 -0.1
5,713,823 - PFR28_05009 0.22 -0.5
5,713,881 + PFR28_05009 0.32 -0.9
5,713,882 - PFR28_05009 0.32 +0.7
5,713,882 - PFR28_05009 0.32 -0.1
5,713,882 - PFR28_05009 0.32 +0.3
5,714,104 + PFR28_05009 0.67 +0.5
5,714,105 - PFR28_05009 0.67 +0.6
5,714,105 - PFR28_05009 0.67 +1.1
5,714,144 - PFR28_05009 0.74 -0.5
5,714,275 + -0.9
5,714,275 + +0.7
5,714,276 - -1.1
5,714,276 - +0.3
5,714,276 - +0.3
5,714,281 + -1.3
5,714,281 + +1.6
5,714,281 + +0.5
5,714,282 - -0.5
5,714,282 - +0.0
5,714,282 - +0.8
5,714,394 + PFR28_05010 0.16 +2.3
5,714,394 + PFR28_05010 0.16 +0.1
5,714,394 + PFR28_05010 0.16 -0.7
5,714,394 + PFR28_05010 0.16 +0.3
5,714,394 + PFR28_05010 0.16 +0.8
5,714,394 + PFR28_05010 0.16 +2.0
5,714,394 + PFR28_05010 0.16 +0.6
5,714,394 + PFR28_05010 0.16 -1.3
5,714,394 + PFR28_05010 0.16 +0.7
5,714,395 - PFR28_05010 0.17 -0.6
5,714,395 - PFR28_05010 0.17 -0.1
5,714,395 - PFR28_05010 0.17 +0.7
5,714,395 - PFR28_05010 0.17 +1.4
5,714,395 - PFR28_05010 0.17 -0.8
5,714,395 - PFR28_05010 0.17 -1.2
5,714,395 - PFR28_05010 0.17 +0.4
5,714,395 - PFR28_05010 0.17 -2.0
5,714,395 - PFR28_05010 0.17 +0.6
5,714,395 - PFR28_05010 0.17 -0.2
5,714,395 - PFR28_05010 0.17 -0.7
5,714,395 - PFR28_05010 0.17 -1.2
5,714,395 - PFR28_05010 0.17 +0.3
5,714,395 - PFR28_05010 0.17 -0.0
5,714,395 - PFR28_05010 0.17 -1.3
5,714,396 + PFR28_05010 0.17 +0.1
5,714,396 + PFR28_05010 0.17 -0.6
5,714,397 - PFR28_05010 0.17 +0.6
5,714,397 - PFR28_05010 0.17 -0.7
5,714,468 + PFR28_05010 0.30 -0.5
5,714,468 + PFR28_05010 0.30 -0.6
5,714,468 + PFR28_05010 0.30 +0.0
5,714,468 + PFR28_05010 0.30 +0.6
5,714,469 - PFR28_05010 0.30 +1.2
5,714,469 - PFR28_05010 0.30 -2.0
5,714,469 - PFR28_05010 0.30 -0.8
5,714,469 - PFR28_05010 0.30 +0.1
5,714,469 - PFR28_05010 0.30 -0.5
5,714,469 - PFR28_05010 0.30 +0.7
5,714,472 + PFR28_05010 0.31 +0.4
5,714,473 - PFR28_05010 0.31 +0.6
5,714,473 - PFR28_05010 0.31 +0.4
5,714,583 + PFR28_05010 0.51 -0.1
5,714,583 + PFR28_05010 0.51 -1.0
5,714,584 - PFR28_05010 0.51 -0.0
5,714,584 - PFR28_05010 0.51 +0.3
5,714,584 - PFR28_05010 0.51 +0.7
5,714,584 - PFR28_05010 0.51 -0.8
5,714,601 - PFR28_05010 0.54 +0.7
5,714,700 + PFR28_05010 0.73 +0.1
5,714,700 + PFR28_05010 0.73 -1.4
5,714,701 - PFR28_05010 0.73 -0.7
5,714,701 - PFR28_05010 0.73 +1.2
5,714,701 - PFR28_05010 0.73 -0.2
5,714,768 - PFR28_05010 0.85 +0.1
5,714,830 + -1.1
5,714,830 + +0.3
5,714,831 - +0.6
5,715,008 + +0.5
5,715,008 + -1.2
5,715,009 - +0.7
5,715,009 - +0.3
5,715,009 - -0.6
5,715,010 + -0.4
5,715,010 + +0.5
5,715,011 - +0.3
5,715,011 - -0.2
5,715,011 - -1.2
5,715,136 + PFR28_05011 0.14 +1.0

Or see this region's nucleotide sequence