Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3972

Experiment: m.b. Lomefloxacin 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3970 and Echvi_3971 are separated by 83 nucleotidesEchvi_3971 and Echvi_3972 are separated by 12 nucleotidesEchvi_3972 and Echvi_3973 are separated by 94 nucleotidesEchvi_3973 and Echvi_3974 are separated by 54 nucleotides Echvi_3970: Echvi_3970 - hypothetical protein, at 4,758,633 to 4,759,163 _3970 Echvi_3971: Echvi_3971 - Predicted transcriptional regulator, at 4,759,247 to 4,760,014 _3971 Echvi_3972: Echvi_3972 - hypothetical protein, at 4,760,027 to 4,760,284 _3972 Echvi_3973: Echvi_3973 - hypothetical protein, at 4,760,379 to 4,760,519 _3973 Echvi_3974: Echvi_3974 - Outer membrane receptor proteins, mostly Fe transport, at 4,760,574 to 4,762,901 _3974 Position (kb) 4760 4761Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4759.068 kb on - strand, within Echvi_3970at 4759.086 kb on - strand, within Echvi_3970at 4759.262 kb on - strandat 4759.262 kb on - strandat 4759.270 kb on - strandat 4759.324 kb on + strand, within Echvi_3971at 4759.325 kb on - strand, within Echvi_3971at 4759.383 kb on - strand, within Echvi_3971at 4759.411 kb on + strand, within Echvi_3971at 4759.411 kb on + strand, within Echvi_3971at 4759.411 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on + strand, within Echvi_3971at 4759.413 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.414 kb on - strand, within Echvi_3971at 4759.461 kb on + strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.462 kb on - strand, within Echvi_3971at 4759.466 kb on - strand, within Echvi_3971at 4759.466 kb on - strand, within Echvi_3971at 4759.477 kb on + strand, within Echvi_3971at 4759.479 kb on + strand, within Echvi_3971at 4759.480 kb on - strand, within Echvi_3971at 4759.480 kb on - strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.486 kb on + strand, within Echvi_3971at 4759.487 kb on - strand, within Echvi_3971at 4759.501 kb on + strand, within Echvi_3971at 4759.504 kb on + strand, within Echvi_3971at 4759.505 kb on - strand, within Echvi_3971at 4759.512 kb on + strand, within Echvi_3971at 4759.513 kb on - strand, within Echvi_3971at 4759.549 kb on + strand, within Echvi_3971at 4759.550 kb on - strand, within Echvi_3971at 4759.550 kb on - strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.551 kb on + strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.552 kb on - strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.591 kb on + strand, within Echvi_3971at 4759.592 kb on - strand, within Echvi_3971at 4759.592 kb on - strand, within Echvi_3971at 4759.592 kb on - strand, within Echvi_3971at 4759.620 kb on + strand, within Echvi_3971at 4759.620 kb on + strand, within Echvi_3971at 4759.621 kb on - strand, within Echvi_3971at 4759.621 kb on - strand, within Echvi_3971at 4759.637 kb on + strand, within Echvi_3971at 4759.674 kb on + strand, within Echvi_3971at 4759.866 kb on - strand, within Echvi_3971at 4759.868 kb on + strand, within Echvi_3971at 4759.868 kb on + strand, within Echvi_3971at 4759.889 kb on - strand, within Echvi_3971at 4759.911 kb on + strand, within Echvi_3971at 4759.941 kb on - strandat 4759.953 kb on - strandat 4759.953 kb on - strandat 4759.985 kb on + strandat 4759.986 kb on - strandat 4759.986 kb on - strandat 4759.989 kb on + strandat 4760.007 kb on - strandat 4760.029 kb on - strandat 4760.035 kb on + strandat 4760.035 kb on + strandat 4760.036 kb on - strandat 4760.036 kb on - strandat 4760.036 kb on - strandat 4760.037 kb on + strandat 4760.037 kb on + strandat 4760.090 kb on + strand, within Echvi_3972at 4760.181 kb on + strand, within Echvi_3972at 4760.222 kb on + strand, within Echvi_3972at 4760.255 kb on + strand, within Echvi_3972at 4760.256 kb on - strand, within Echvi_3972at 4760.285 kb on - strandat 4760.291 kb on + strandat 4760.291 kb on + strandat 4760.291 kb on + strandat 4760.292 kb on - strandat 4760.299 kb on + strandat 4760.300 kb on - strandat 4760.300 kb on - strandat 4760.300 kb on - strandat 4760.300 kb on - strandat 4760.300 kb on - strandat 4760.300 kb on - strandat 4760.300 kb on - strandat 4760.303 kb on - strandat 4760.437 kb on + strand, within Echvi_3973at 4760.438 kb on - strand, within Echvi_3973at 4760.463 kb on - strand, within Echvi_3973at 4760.470 kb on + strand, within Echvi_3973at 4760.470 kb on + strand, within Echvi_3973at 4760.470 kb on + strand, within Echvi_3973at 4760.470 kb on + strand, within Echvi_3973at 4760.471 kb on - strand, within Echvi_3973at 4760.471 kb on - strand, within Echvi_3973at 4760.471 kb on - strand, within Echvi_3973at 4760.471 kb on - strand, within Echvi_3973at 4760.471 kb on - strand, within Echvi_3973at 4760.523 kb on + strandat 4760.555 kb on - strandat 4760.555 kb on - strandat 4760.555 kb on - strandat 4760.557 kb on + strandat 4760.573 kb on + strandat 4760.586 kb on - strandat 4760.586 kb on - strandat 4760.589 kb on + strandat 4760.590 kb on - strandat 4760.608 kb on + strandat 4760.626 kb on + strandat 4760.626 kb on + strandat 4760.739 kb on + strandat 4760.739 kb on + strandat 4760.739 kb on + strandat 4760.793 kb on + strandat 4760.793 kb on + strandat 4760.793 kb on + strandat 4760.794 kb on - strandat 4761.003 kb on - strand, within Echvi_3974at 4761.007 kb on + strand, within Echvi_3974at 4761.027 kb on - strand, within Echvi_3974at 4761.043 kb on + strand, within Echvi_3974at 4761.059 kb on + strand, within Echvi_3974at 4761.060 kb on - strand, within Echvi_3974at 4761.192 kb on + strand, within Echvi_3974at 4761.275 kb on - strand, within Echvi_3974at 4761.279 kb on + strand, within Echvi_3974at 4761.279 kb on + strand, within Echvi_3974at 4761.279 kb on + strand, within Echvi_3974

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM
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4,759,068 - Echvi_3970 0.82 +0.2
4,759,086 - Echvi_3970 0.85 -0.9
4,759,262 - -0.8
4,759,262 - +0.1
4,759,270 - -1.0
4,759,324 + Echvi_3971 0.10 +0.6
4,759,325 - Echvi_3971 0.10 -0.3
4,759,383 - Echvi_3971 0.18 -1.1
4,759,411 + Echvi_3971 0.21 +0.3
4,759,411 + Echvi_3971 0.21 -0.5
4,759,411 + Echvi_3971 0.21 +1.4
4,759,413 + Echvi_3971 0.22 -0.6
4,759,413 + Echvi_3971 0.22 -0.1
4,759,413 + Echvi_3971 0.22 -0.4
4,759,413 + Echvi_3971 0.22 -0.6
4,759,413 + Echvi_3971 0.22 -0.0
4,759,413 + Echvi_3971 0.22 +0.5
4,759,413 + Echvi_3971 0.22 +0.1
4,759,413 + Echvi_3971 0.22 +0.5
4,759,413 + Echvi_3971 0.22 -0.1
4,759,413 - Echvi_3971 0.22 -0.6
4,759,414 - Echvi_3971 0.22 +0.0
4,759,414 - Echvi_3971 0.22 +0.1
4,759,414 - Echvi_3971 0.22 +1.3
4,759,414 - Echvi_3971 0.22 -0.2
4,759,414 - Echvi_3971 0.22 +1.4
4,759,414 - Echvi_3971 0.22 +0.1
4,759,414 - Echvi_3971 0.22 +0.6
4,759,461 + Echvi_3971 0.28 -0.6
4,759,462 - Echvi_3971 0.28 +0.5
4,759,462 - Echvi_3971 0.28 +0.8
4,759,462 - Echvi_3971 0.28 +0.1
4,759,462 - Echvi_3971 0.28 +0.1
4,759,462 - Echvi_3971 0.28 +0.3
4,759,466 - Echvi_3971 0.29 +0.4
4,759,466 - Echvi_3971 0.29 +0.6
4,759,477 + Echvi_3971 0.30 -1.6
4,759,479 + Echvi_3971 0.30 -0.4
4,759,480 - Echvi_3971 0.30 +0.5
4,759,480 - Echvi_3971 0.30 -0.2
4,759,486 + Echvi_3971 0.31 -0.4
4,759,486 + Echvi_3971 0.31 +0.3
4,759,486 + Echvi_3971 0.31 +1.6
4,759,486 + Echvi_3971 0.31 -0.2
4,759,487 - Echvi_3971 0.31 +3.4
4,759,501 + Echvi_3971 0.33 -1.4
4,759,504 + Echvi_3971 0.33 -0.3
4,759,505 - Echvi_3971 0.34 -1.1
4,759,512 + Echvi_3971 0.35 -0.3
4,759,513 - Echvi_3971 0.35 -1.8
4,759,549 + Echvi_3971 0.39 -0.1
4,759,550 - Echvi_3971 0.39 +2.0
4,759,550 - Echvi_3971 0.39 -0.3
4,759,551 + Echvi_3971 0.40 +2.6
4,759,551 + Echvi_3971 0.40 -1.3
4,759,551 + Echvi_3971 0.40 -0.5
4,759,551 + Echvi_3971 0.40 -1.2
4,759,551 + Echvi_3971 0.40 -0.6
4,759,551 + Echvi_3971 0.40 -0.4
4,759,552 - Echvi_3971 0.40 -1.9
4,759,552 - Echvi_3971 0.40 +0.3
4,759,552 - Echvi_3971 0.40 -0.6
4,759,552 - Echvi_3971 0.40 +0.3
4,759,591 + Echvi_3971 0.45 +0.9
4,759,591 + Echvi_3971 0.45 -1.1
4,759,591 + Echvi_3971 0.45 +0.3
4,759,591 + Echvi_3971 0.45 -0.9
4,759,592 - Echvi_3971 0.45 +0.1
4,759,592 - Echvi_3971 0.45 +0.1
4,759,592 - Echvi_3971 0.45 +0.7
4,759,620 + Echvi_3971 0.49 -0.8
4,759,620 + Echvi_3971 0.49 +0.2
4,759,621 - Echvi_3971 0.49 +0.2
4,759,621 - Echvi_3971 0.49 -1.2
4,759,637 + Echvi_3971 0.51 -0.0
4,759,674 + Echvi_3971 0.56 -0.4
4,759,866 - Echvi_3971 0.81 +1.3
4,759,868 + Echvi_3971 0.81 +0.2
4,759,868 + Echvi_3971 0.81 +0.0
4,759,889 - Echvi_3971 0.84 -0.5
4,759,911 + Echvi_3971 0.86 +0.4
4,759,941 - -0.4
4,759,953 - +0.3
4,759,953 - -0.6
4,759,985 + -1.5
4,759,986 - +0.2
4,759,986 - -0.3
4,759,989 + +2.0
4,760,007 - -0.7
4,760,029 - -0.1
4,760,035 + -1.8
4,760,035 + -0.9
4,760,036 - -0.4
4,760,036 - -0.4
4,760,036 - +1.4
4,760,037 + -0.4
4,760,037 + -1.2
4,760,090 + Echvi_3972 0.24 -1.4
4,760,181 + Echvi_3972 0.60 -0.9
4,760,222 + Echvi_3972 0.76 -0.0
4,760,255 + Echvi_3972 0.88 +0.2
4,760,256 - Echvi_3972 0.89 -0.7
4,760,285 - -0.1
4,760,291 + -0.7
4,760,291 + -0.2
4,760,291 + -0.5
4,760,292 - -0.7
4,760,299 + -0.8
4,760,300 - -1.1
4,760,300 - -0.4
4,760,300 - +0.1
4,760,300 - -2.3
4,760,300 - -0.2
4,760,300 - +0.2
4,760,300 - -1.1
4,760,303 - -0.8
4,760,437 + Echvi_3973 0.41 +0.6
4,760,438 - Echvi_3973 0.42 +0.2
4,760,463 - Echvi_3973 0.60 -0.2
4,760,470 + Echvi_3973 0.65 +0.6
4,760,470 + Echvi_3973 0.65 +0.8
4,760,470 + Echvi_3973 0.65 +0.1
4,760,470 + Echvi_3973 0.65 +1.6
4,760,471 - Echvi_3973 0.65 -0.1
4,760,471 - Echvi_3973 0.65 -0.1
4,760,471 - Echvi_3973 0.65 -0.9
4,760,471 - Echvi_3973 0.65 +0.4
4,760,471 - Echvi_3973 0.65 +0.4
4,760,523 + +1.3
4,760,555 - +0.3
4,760,555 - +0.3
4,760,555 - +1.4
4,760,557 + +0.8
4,760,573 + -0.4
4,760,586 - -0.7
4,760,586 - -0.4
4,760,589 + -0.2
4,760,590 - +0.6
4,760,608 + +0.1
4,760,626 + +0.0
4,760,626 + +0.1
4,760,739 + -0.8
4,760,739 + -0.9
4,760,739 + -1.7
4,760,793 + +0.4
4,760,793 + -2.2
4,760,793 + -0.8
4,760,794 - +1.6
4,761,003 - Echvi_3974 0.18 +0.3
4,761,007 + Echvi_3974 0.19 -1.5
4,761,027 - Echvi_3974 0.19 -1.7
4,761,043 + Echvi_3974 0.20 -1.0
4,761,059 + Echvi_3974 0.21 +0.6
4,761,060 - Echvi_3974 0.21 +0.6
4,761,192 + Echvi_3974 0.27 -0.4
4,761,275 - Echvi_3974 0.30 -0.7
4,761,279 + Echvi_3974 0.30 +0.6
4,761,279 + Echvi_3974 0.30 +0.1
4,761,279 + Echvi_3974 0.30 -0.3

Or see this region's nucleotide sequence