Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0674

Experiment: m.b. Lomefloxacin 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0672 and Echvi_0673 are separated by 90 nucleotidesEchvi_0673 and Echvi_0674 are separated by 110 nucleotidesEchvi_0674 and Echvi_0675 are separated by 206 nucleotides Echvi_0672: Echvi_0672 - lipoate-protein ligase B, at 754,684 to 755,442 _0672 Echvi_0673: Echvi_0673 - Predicted endonuclease distantly related to archaeal Holliday junction resolvase, at 755,533 to 755,889 _0673 Echvi_0674: Echvi_0674 - hypothetical protein, at 756,000 to 756,863 _0674 Echvi_0675: Echvi_0675 - Aspartate/tyrosine/aromatic aminotransferase, at 757,070 to 758,272 _0675 Position (kb) 755 756 757Strain fitness (log2 ratio) -2 -1 0 1 2at 755.409 kb on - strandat 755.425 kb on + strandat 755.529 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.547 kb on + strandat 755.548 kb on - strandat 755.604 kb on + strand, within Echvi_0673at 755.604 kb on + strand, within Echvi_0673at 755.605 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.624 kb on - strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673at 755.631 kb on + strand, within Echvi_0673at 755.719 kb on + strand, within Echvi_0673at 755.720 kb on - strand, within Echvi_0673at 755.740 kb on + strand, within Echvi_0673at 755.742 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.779 kb on + strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.780 kb on - strand, within Echvi_0673at 755.781 kb on + strand, within Echvi_0673at 755.782 kb on - strand, within Echvi_0673at 755.802 kb on + strand, within Echvi_0673at 755.803 kb on - strand, within Echvi_0673at 755.834 kb on - strand, within Echvi_0673at 755.862 kb on + strandat 755.863 kb on - strandat 755.920 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.053 kb on + strandat 756.054 kb on - strandat 756.054 kb on - strandat 756.054 kb on - strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.055 kb on + strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.056 kb on - strandat 756.111 kb on + strand, within Echvi_0674at 756.131 kb on + strand, within Echvi_0674at 756.176 kb on - strand, within Echvi_0674at 756.218 kb on - strand, within Echvi_0674at 756.233 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.241 kb on + strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.242 kb on - strand, within Echvi_0674at 756.262 kb on + strand, within Echvi_0674at 756.281 kb on + strand, within Echvi_0674at 756.282 kb on - strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.286 kb on + strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.287 kb on - strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.289 kb on + strand, within Echvi_0674at 756.290 kb on - strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.322 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.325 kb on + strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.326 kb on - strand, within Echvi_0674at 756.339 kb on + strand, within Echvi_0674at 756.340 kb on - strand, within Echvi_0674at 756.394 kb on + strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.395 kb on - strand, within Echvi_0674at 756.428 kb on + strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.429 kb on - strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.439 kb on + strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.440 kb on - strand, within Echvi_0674at 756.458 kb on - strand, within Echvi_0674at 756.517 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.532 kb on + strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.533 kb on - strand, within Echvi_0674at 756.551 kb on + strand, within Echvi_0674at 756.560 kb on + strand, within Echvi_0674at 756.561 kb on - strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.637 kb on + strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.638 kb on - strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.641 kb on + strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.642 kb on - strand, within Echvi_0674at 756.722 kb on + strand, within Echvi_0674at 756.723 kb on - strand, within Echvi_0674at 756.826 kb on - strandat 756.834 kb on + strandat 756.835 kb on - strandat 756.844 kb on + strandat 756.864 kb on - strandat 756.871 kb on - strandat 756.901 kb on - strandat 756.914 kb on + strandat 756.922 kb on - strandat 756.925 kb on + strandat 756.926 kb on - strandat 756.953 kb on + strandat 756.953 kb on + strandat 756.954 kb on - strandat 756.954 kb on - strandat 756.954 kb on - strandat 756.995 kb on - strandat 757.032 kb on - strandat 757.050 kb on + strandat 757.051 kb on - strandat 757.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM
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755,409 - +1.2
755,425 + -0.2
755,529 + -0.2
755,547 + -0.7
755,547 + +0.1
755,547 + +0.3
755,548 - +0.5
755,604 + Echvi_0673 0.20 -0.0
755,604 + Echvi_0673 0.20 -0.6
755,605 - Echvi_0673 0.20 +1.7
755,624 - Echvi_0673 0.25 -1.0
755,624 - Echvi_0673 0.25 +0.2
755,624 - Echvi_0673 0.25 -2.0
755,631 + Echvi_0673 0.27 +0.2
755,631 + Echvi_0673 0.27 +0.5
755,719 + Echvi_0673 0.52 +0.5
755,720 - Echvi_0673 0.52 -0.3
755,740 + Echvi_0673 0.58 -0.2
755,742 + Echvi_0673 0.59 +0.3
755,779 + Echvi_0673 0.69 -0.4
755,779 + Echvi_0673 0.69 -0.2
755,779 + Echvi_0673 0.69 -0.5
755,780 - Echvi_0673 0.69 -0.1
755,780 - Echvi_0673 0.69 +0.6
755,780 - Echvi_0673 0.69 -0.5
755,780 - Echvi_0673 0.69 -0.3
755,781 + Echvi_0673 0.69 +0.4
755,782 - Echvi_0673 0.70 +0.2
755,802 + Echvi_0673 0.75 +0.2
755,803 - Echvi_0673 0.76 +1.1
755,834 - Echvi_0673 0.84 +1.9
755,862 + -0.5
755,863 - +0.1
755,920 + -0.1
756,053 + -0.2
756,053 + -0.0
756,053 + -1.2
756,053 + -0.5
756,053 + -0.4
756,054 - -0.5
756,054 - -0.4
756,054 - -0.4
756,055 + -0.2
756,055 + -0.6
756,055 + -1.5
756,055 + -0.1
756,055 + -0.9
756,056 - -1.9
756,056 - -0.8
756,056 - -1.0
756,056 - -1.4
756,056 - +0.3
756,056 - -0.7
756,056 - -0.6
756,056 - -0.2
756,056 - -0.0
756,056 - -0.5
756,111 + Echvi_0674 0.13 -0.4
756,131 + Echvi_0674 0.15 -0.4
756,176 - Echvi_0674 0.20 -0.5
756,218 - Echvi_0674 0.25 -0.9
756,233 + Echvi_0674 0.27 -0.8
756,241 + Echvi_0674 0.28 -0.3
756,241 + Echvi_0674 0.28 -0.6
756,242 - Echvi_0674 0.28 -0.6
756,242 - Echvi_0674 0.28 -1.1
756,242 - Echvi_0674 0.28 -0.8
756,242 - Echvi_0674 0.28 -1.3
756,242 - Echvi_0674 0.28 +1.3
756,242 - Echvi_0674 0.28 -1.3
756,262 + Echvi_0674 0.30 +0.4
756,281 + Echvi_0674 0.33 -0.3
756,282 - Echvi_0674 0.33 -1.2
756,286 + Echvi_0674 0.33 -1.7
756,286 + Echvi_0674 0.33 -1.8
756,286 + Echvi_0674 0.33 -0.4
756,287 - Echvi_0674 0.33 -0.0
756,287 - Echvi_0674 0.33 -0.1
756,287 - Echvi_0674 0.33 -0.6
756,287 - Echvi_0674 0.33 +0.3
756,289 + Echvi_0674 0.33 -0.8
756,289 + Echvi_0674 0.33 -0.1
756,289 + Echvi_0674 0.33 -0.2
756,289 + Echvi_0674 0.33 -0.5
756,289 + Echvi_0674 0.33 +0.0
756,290 - Echvi_0674 0.34 -1.1
756,322 + Echvi_0674 0.37 -0.0
756,322 + Echvi_0674 0.37 -1.4
756,325 + Echvi_0674 0.38 -1.4
756,325 + Echvi_0674 0.38 -0.9
756,325 + Echvi_0674 0.38 -0.3
756,326 - Echvi_0674 0.38 -0.8
756,326 - Echvi_0674 0.38 -0.5
756,326 - Echvi_0674 0.38 +0.4
756,326 - Echvi_0674 0.38 +0.4
756,339 + Echvi_0674 0.39 -1.6
756,340 - Echvi_0674 0.39 -1.0
756,394 + Echvi_0674 0.46 +1.0
756,395 - Echvi_0674 0.46 -0.4
756,395 - Echvi_0674 0.46 -0.3
756,428 + Echvi_0674 0.50 -0.1
756,429 - Echvi_0674 0.50 -0.1
756,429 - Echvi_0674 0.50 +1.0
756,439 + Echvi_0674 0.51 -1.6
756,439 + Echvi_0674 0.51 -1.0
756,440 - Echvi_0674 0.51 -1.9
756,440 - Echvi_0674 0.51 -1.1
756,440 - Echvi_0674 0.51 -1.0
756,458 - Echvi_0674 0.53 -0.4
756,517 + Echvi_0674 0.60 +0.1
756,532 + Echvi_0674 0.62 -0.8
756,532 + Echvi_0674 0.62 -1.0
756,532 + Echvi_0674 0.62 -0.3
756,532 + Echvi_0674 0.62 +0.1
756,533 - Echvi_0674 0.62 -1.4
756,533 - Echvi_0674 0.62 -0.8
756,533 - Echvi_0674 0.62 -0.5
756,551 + Echvi_0674 0.64 -0.7
756,560 + Echvi_0674 0.65 -0.3
756,561 - Echvi_0674 0.65 +0.7
756,637 + Echvi_0674 0.74 -0.2
756,637 + Echvi_0674 0.74 -0.1
756,637 + Echvi_0674 0.74 -0.3
756,637 + Echvi_0674 0.74 +0.1
756,637 + Echvi_0674 0.74 -0.8
756,638 - Echvi_0674 0.74 -1.3
756,638 - Echvi_0674 0.74 -0.6
756,638 - Echvi_0674 0.74 +0.6
756,638 - Echvi_0674 0.74 -0.4
756,641 + Echvi_0674 0.74 -0.7
756,641 + Echvi_0674 0.74 -0.1
756,641 + Echvi_0674 0.74 -0.8
756,642 - Echvi_0674 0.74 -1.4
756,642 - Echvi_0674 0.74 -0.7
756,722 + Echvi_0674 0.84 -0.5
756,723 - Echvi_0674 0.84 -0.4
756,826 - -1.4
756,834 + -0.2
756,835 - -0.2
756,844 + -0.5
756,864 - -0.4
756,871 - +0.3
756,901 - +0.3
756,914 + +1.6
756,922 - +1.7
756,925 + +0.1
756,926 - -0.5
756,953 + -1.0
756,953 + -0.7
756,954 - -0.8
756,954 - -0.9
756,954 - -0.9
756,995 - -0.1
757,032 - -0.3
757,050 + -1.3
757,051 - -0.1
757,062 + -0.2

Or see this region's nucleotide sequence