Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0297

Experiment: m.b. Lomefloxacin 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0296 and Echvi_0297 are separated by 75 nucleotidesEchvi_0297 and Echvi_0298 are separated by 249 nucleotides Echvi_0296: Echvi_0296 - hypothetical protein, at 306,355 to 307,203 _0296 Echvi_0297: Echvi_0297 - DNA polymerase III, beta subunit, at 307,279 to 308,403 _0297 Echvi_0298: Echvi_0298 - gliding-associated putative ABC transporter substrate-binding component GldG, at 308,653 to 310,368 _0298 Position (kb) 307 308 309Strain fitness (log2 ratio) -2 -1 0 1 2at 306.281 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.281 kb on + strandat 306.284 kb on + strandat 306.285 kb on - strandat 306.287 kb on + strandat 306.310 kb on - strandat 306.312 kb on + strandat 306.312 kb on + strandat 306.313 kb on - strandat 306.318 kb on - strandat 306.318 kb on - strandat 306.323 kb on - strandat 306.323 kb on - strandat 306.351 kb on + strandat 306.351 kb on + strandat 306.351 kb on + strandat 306.352 kb on - strandat 306.414 kb on + strandat 306.414 kb on + strandat 306.414 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.422 kb on + strandat 306.423 kb on - strandat 306.469 kb on + strand, within Echvi_0296at 306.501 kb on - strand, within Echvi_0296at 306.501 kb on - strand, within Echvi_0296at 306.648 kb on - strand, within Echvi_0296at 306.722 kb on + strand, within Echvi_0296at 306.815 kb on - strand, within Echvi_0296at 307.006 kb on + strand, within Echvi_0296at 307.036 kb on + strand, within Echvi_0296at 307.043 kb on + strand, within Echvi_0296at 307.044 kb on - strand, within Echvi_0296at 307.050 kb on + strand, within Echvi_0296at 307.050 kb on + strand, within Echvi_0296at 307.051 kb on - strand, within Echvi_0296at 307.055 kb on + strand, within Echvi_0296at 307.084 kb on + strand, within Echvi_0296at 307.085 kb on - strand, within Echvi_0296at 307.194 kb on + strandat 307.201 kb on + strandat 307.258 kb on + strandat 307.286 kb on + strandat 307.286 kb on + strandat 307.286 kb on + strandat 307.286 kb on + strandat 307.287 kb on - strandat 308.452 kb on - strandat 308.452 kb on - strandat 308.452 kb on - strandat 308.452 kb on - strandat 308.499 kb on - strandat 308.610 kb on + strandat 308.734 kb on + strandat 308.736 kb on + strandat 308.736 kb on + strandat 308.737 kb on - strandat 308.846 kb on + strand, within Echvi_0298at 308.846 kb on + strand, within Echvi_0298at 308.846 kb on + strand, within Echvi_0298at 308.847 kb on - strand, within Echvi_0298at 308.847 kb on - strand, within Echvi_0298at 308.851 kb on + strand, within Echvi_0298at 308.852 kb on - strand, within Echvi_0298at 308.852 kb on - strand, within Echvi_0298at 308.856 kb on + strand, within Echvi_0298at 309.019 kb on + strand, within Echvi_0298at 309.046 kb on - strand, within Echvi_0298at 309.230 kb on - strand, within Echvi_0298at 309.247 kb on + strand, within Echvi_0298at 309.247 kb on + strand, within Echvi_0298at 309.247 kb on + strand, within Echvi_0298at 309.248 kb on - strand, within Echvi_0298at 309.248 kb on - strand, within Echvi_0298at 309.317 kb on + strand, within Echvi_0298at 309.317 kb on + strand, within Echvi_0298at 309.318 kb on - strand, within Echvi_0298at 309.384 kb on - strand, within Echvi_0298

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM
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306,281 + -0.3
306,281 + -0.1
306,281 + -0.2
306,281 + +0.7
306,284 + +0.2
306,285 - +0.3
306,287 + -0.3
306,310 - +0.7
306,312 + -0.2
306,312 + +0.8
306,313 - +1.0
306,318 - -0.7
306,318 - -0.0
306,323 - -0.1
306,323 - -0.2
306,351 + +0.0
306,351 + -1.2
306,351 + -0.6
306,352 - -0.1
306,414 + -0.4
306,414 + +0.7
306,414 + +0.7
306,422 + -1.1
306,422 + +0.7
306,422 + +0.4
306,422 + +0.2
306,423 - +2.3
306,469 + Echvi_0296 0.13 -1.0
306,501 - Echvi_0296 0.17 +0.1
306,501 - Echvi_0296 0.17 -0.0
306,648 - Echvi_0296 0.35 -0.2
306,722 + Echvi_0296 0.43 -0.3
306,815 - Echvi_0296 0.54 -0.8
307,006 + Echvi_0296 0.77 -0.1
307,036 + Echvi_0296 0.80 -0.2
307,043 + Echvi_0296 0.81 +0.9
307,044 - Echvi_0296 0.81 +0.7
307,050 + Echvi_0296 0.82 +0.2
307,050 + Echvi_0296 0.82 +1.1
307,051 - Echvi_0296 0.82 +0.2
307,055 + Echvi_0296 0.82 -0.0
307,084 + Echvi_0296 0.86 +2.1
307,085 - Echvi_0296 0.86 -0.3
307,194 + +0.8
307,201 + +1.1
307,258 + -1.1
307,286 + +0.9
307,286 + -2.3
307,286 + -0.7
307,286 + -1.9
307,287 - -0.5
308,452 - -0.9
308,452 - +0.6
308,452 - -0.9
308,452 - -0.3
308,499 - +0.9
308,610 + -0.5
308,734 + -0.9
308,736 + -0.4
308,736 + -0.9
308,737 - +0.3
308,846 + Echvi_0298 0.11 -0.8
308,846 + Echvi_0298 0.11 -1.4
308,846 + Echvi_0298 0.11 -1.4
308,847 - Echvi_0298 0.11 -0.8
308,847 - Echvi_0298 0.11 -0.6
308,851 + Echvi_0298 0.12 -1.8
308,852 - Echvi_0298 0.12 -1.5
308,852 - Echvi_0298 0.12 -0.5
308,856 + Echvi_0298 0.12 -0.5
309,019 + Echvi_0298 0.21 -1.1
309,046 - Echvi_0298 0.23 -0.0
309,230 - Echvi_0298 0.34 -1.9
309,247 + Echvi_0298 0.35 -1.1
309,247 + Echvi_0298 0.35 -1.8
309,247 + Echvi_0298 0.35 -1.0
309,248 - Echvi_0298 0.35 -0.5
309,248 - Echvi_0298 0.35 -0.4
309,317 + Echvi_0298 0.39 -0.9
309,317 + Echvi_0298 0.39 -0.4
309,318 - Echvi_0298 0.39 -0.5
309,384 - Echvi_0298 0.43 -0.8

Or see this region's nucleotide sequence