Experiment: m.b. Lomefloxacin 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0028 and Echvi_0029 are separated by 62 nucleotides Echvi_0029 and Echvi_0030 are separated by 536 nucleotides
Echvi_0028: Echvi_0028 - Site-specific recombinase XerD, at 26,675 to 27,688
_0028
Echvi_0029: Echvi_0029 - DNA repair proteins, at 27,751 to 28,314
_0029
Echvi_0030: Echvi_0030 - ribosomal protein S20, at 28,851 to 29,105
_0030
Position (kb) 27
28
29 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.762 kb on + strand at 27.762 kb on + strand at 27.764 kb on + strand at 27.773 kb on + strand at 27.852 kb on + strand, within Echvi_0029 at 27.923 kb on + strand, within Echvi_0029 at 27.944 kb on - strand, within Echvi_0029 at 27.965 kb on + strand, within Echvi_0029 at 27.965 kb on + strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.966 kb on - strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.967 kb on + strand, within Echvi_0029 at 27.968 kb on - strand, within Echvi_0029 at 27.968 kb on - strand, within Echvi_0029 at 28.036 kb on + strand, within Echvi_0029 at 28.036 kb on + strand, within Echvi_0029 at 28.062 kb on + strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.063 kb on - strand, within Echvi_0029 at 28.128 kb on + strand, within Echvi_0029 at 28.128 kb on + strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.148 kb on - strand, within Echvi_0029 at 28.149 kb on + strand, within Echvi_0029 at 28.243 kb on + strand, within Echvi_0029 at 28.243 kb on + strand, within Echvi_0029 at 28.305 kb on - strand at 28.352 kb on + strand at 28.417 kb on + strand at 28.418 kb on - strand at 28.423 kb on + strand at 28.559 kb on - strand at 28.563 kb on - strand at 28.563 kb on - strand at 28.567 kb on - strand at 28.567 kb on - strand at 28.568 kb on + strand at 28.587 kb on + strand at 28.591 kb on + strand at 28.591 kb on + strand at 28.592 kb on - strand at 28.597 kb on + strand at 28.598 kb on - strand at 28.621 kb on + strand at 28.666 kb on - strand at 28.688 kb on + strand at 28.710 kb on + strand at 28.757 kb on - strand at 28.757 kb on - strand at 28.757 kb on - strand at 28.775 kb on + strand at 28.775 kb on + strand at 28.836 kb on + strand at 28.841 kb on - strand at 28.850 kb on - strand at 28.992 kb on - strand, within Echvi_0030 at 29.204 kb on + strand at 29.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.0125 mM remove 27,762 + +1.1 27,762 + -0.0 27,764 + +2.0 27,773 + +1.2 27,852 + Echvi_0029 0.18 -0.5 27,923 + Echvi_0029 0.30 -0.5 27,944 - Echvi_0029 0.34 -1.5 27,965 + Echvi_0029 0.38 -1.5 27,965 + Echvi_0029 0.38 +1.4 27,966 - Echvi_0029 0.38 -0.3 27,966 - Echvi_0029 0.38 -0.4 27,966 - Echvi_0029 0.38 -0.5 27,966 - Echvi_0029 0.38 -0.7 27,966 - Echvi_0029 0.38 -3.1 27,967 + Echvi_0029 0.38 -0.3 27,967 + Echvi_0029 0.38 +1.9 27,967 + Echvi_0029 0.38 -0.3 27,967 + Echvi_0029 0.38 -0.6 27,967 + Echvi_0029 0.38 +1.3 27,967 + Echvi_0029 0.38 +0.8 27,967 + Echvi_0029 0.38 -0.1 27,968 - Echvi_0029 0.38 +0.7 27,968 - Echvi_0029 0.38 +0.2 28,036 + Echvi_0029 0.51 +0.1 28,036 + Echvi_0029 0.51 +1.8 28,062 + Echvi_0029 0.55 -0.3 28,063 - Echvi_0029 0.55 +0.4 28,063 - Echvi_0029 0.55 -0.5 28,063 - Echvi_0029 0.55 -0.2 28,063 - Echvi_0029 0.55 -2.0 28,128 + Echvi_0029 0.67 +0.6 28,128 + Echvi_0029 0.67 -0.8 28,148 - Echvi_0029 0.70 -0.1 28,148 - Echvi_0029 0.70 +1.7 28,148 - Echvi_0029 0.70 -0.1 28,149 + Echvi_0029 0.71 +0.7 28,243 + Echvi_0029 0.87 +0.1 28,243 + Echvi_0029 0.87 -0.6 28,305 - +0.4 28,352 + -0.5 28,417 + -0.7 28,418 - -1.3 28,423 + +0.0 28,559 - +0.8 28,563 - -0.9 28,563 - -0.6 28,567 - +0.3 28,567 - -0.4 28,568 + -1.1 28,587 + +0.8 28,591 + +0.3 28,591 + +1.0 28,592 - -0.2 28,597 + +3.2 28,598 - -0.6 28,621 + -0.7 28,666 - -0.3 28,688 + -0.1 28,710 + -0.8 28,757 - -0.2 28,757 - +0.6 28,757 - -0.3 28,775 + +0.2 28,775 + -0.8 28,836 + -0.7 28,841 - +0.2 28,850 - -0.1 28,992 - Echvi_0030 0.55 -1.1 29,204 + +0.2 29,272 - +1.0
Or see this region's nucleotide sequence