Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4350 and Echvi_4351 are separated by 131 nucleotides Echvi_4351 and Echvi_4352 are separated by 418 nucleotides Echvi_4352 and Echvi_4353 are separated by 6 nucleotides
Echvi_4350: Echvi_4350 - Site-specific recombinase XerD, at 5,207,309 to 5,208,577
_4350
Echvi_4351: Echvi_4351 - DNA repair proteins, at 5,208,709 to 5,209,044
_4351
Echvi_4352: Echvi_4352 - hypothetical protein, at 5,209,463 to 5,209,672
_4352
Echvi_4353: Echvi_4353 - Arylsulfatase A and related enzymes, at 5,209,679 to 5,211,124
_4353
Position (kb) 5208
5209
5210 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5208.722 kb on + strand at 5208.999 kb on + strand, within Echvi_4351 at 5209.000 kb on - strand, within Echvi_4351 at 5209.044 kb on + strand at 5209.072 kb on - strand at 5209.087 kb on - strand at 5209.162 kb on + strand at 5209.210 kb on + strand at 5209.228 kb on + strand at 5209.228 kb on + strand at 5209.229 kb on - strand at 5209.247 kb on + strand at 5209.247 kb on + strand at 5209.248 kb on - strand at 5209.272 kb on + strand at 5209.272 kb on + strand at 5209.272 kb on + strand at 5209.272 kb on + strand at 5209.275 kb on + strand at 5209.276 kb on - strand at 5209.290 kb on + strand at 5209.314 kb on + strand at 5209.315 kb on - strand at 5209.315 kb on - strand at 5209.315 kb on - strand at 5209.604 kb on - strand, within Echvi_4352 at 5209.618 kb on - strand, within Echvi_4352 at 5209.653 kb on - strand at 5209.677 kb on + strand at 5209.694 kb on + strand at 5209.761 kb on + strand at 5209.844 kb on + strand, within Echvi_4353 at 5209.845 kb on - strand, within Echvi_4353 at 5209.845 kb on - strand, within Echvi_4353 at 5209.863 kb on + strand, within Echvi_4353 at 5209.863 kb on + strand, within Echvi_4353 at 5209.864 kb on - strand, within Echvi_4353 at 5209.943 kb on - strand, within Echvi_4353 at 5209.978 kb on + strand, within Echvi_4353 at 5209.978 kb on + strand, within Echvi_4353 at 5209.979 kb on - strand, within Echvi_4353 at 5209.980 kb on + strand, within Echvi_4353 at 5209.980 kb on + strand, within Echvi_4353 at 5209.981 kb on - strand, within Echvi_4353 at 5209.996 kb on + strand, within Echvi_4353
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 5,208,722 + -0.2 5,208,999 + Echvi_4351 0.86 -0.1 5,209,000 - Echvi_4351 0.87 -1.2 5,209,044 + +2.3 5,209,072 - -0.1 5,209,087 - +0.6 5,209,162 + -0.5 5,209,210 + -0.4 5,209,228 + +0.5 5,209,228 + -0.9 5,209,229 - -0.8 5,209,247 + +0.8 5,209,247 + -1.8 5,209,248 - +1.2 5,209,272 + -1.2 5,209,272 + -2.2 5,209,272 + -0.3 5,209,272 + -0.2 5,209,275 + -0.3 5,209,276 - -0.3 5,209,290 + +0.7 5,209,314 + -1.6 5,209,315 - +0.5 5,209,315 - -0.2 5,209,315 - +0.4 5,209,604 - Echvi_4352 0.67 +0.2 5,209,618 - Echvi_4352 0.74 -0.2 5,209,653 - -0.4 5,209,677 + +0.9 5,209,694 + -0.6 5,209,761 + +0.2 5,209,844 + Echvi_4353 0.11 +0.1 5,209,845 - Echvi_4353 0.11 -0.7 5,209,845 - Echvi_4353 0.11 -0.1 5,209,863 + Echvi_4353 0.13 -1.0 5,209,863 + Echvi_4353 0.13 +0.3 5,209,864 - Echvi_4353 0.13 -0.2 5,209,943 - Echvi_4353 0.18 -0.3 5,209,978 + Echvi_4353 0.21 +0.4 5,209,978 + Echvi_4353 0.21 +0.8 5,209,979 - Echvi_4353 0.21 +0.3 5,209,980 + Echvi_4353 0.21 +0.2 5,209,980 + Echvi_4353 0.21 -2.6 5,209,981 - Echvi_4353 0.21 +4.1 5,209,996 + Echvi_4353 0.22 +0.2
Or see this region's nucleotide sequence