Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4068 and Echvi_4069 are separated by 399 nucleotides Echvi_4069 and Echvi_4070 are separated by 20 nucleotides
Echvi_4068: Echvi_4068 - isocitrate dehydrogenase, at 4,875,720 to 4,877,183
_4068
Echvi_4069: Echvi_4069 - Enoyl-CoA hydratase/carnithine racemase, at 4,877,583 to 4,878,368
_4069
Echvi_4070: Echvi_4070 - hypothetical protein, at 4,878,389 to 4,879,903
_4070
Position (kb)
4877
4878
4879 Strain fitness (log2 ratio)
-2
-1
0
1 at 4876.613 kb on + strand, within Echvi_4068 at 4876.613 kb on + strand, within Echvi_4068 at 4876.702 kb on + strand, within Echvi_4068 at 4876.765 kb on + strand, within Echvi_4068 at 4876.865 kb on - strand, within Echvi_4068 at 4876.880 kb on + strand, within Echvi_4068 at 4877.083 kb on - strand at 4877.184 kb on - strand at 4877.194 kb on - strand at 4877.206 kb on - strand at 4877.256 kb on + strand at 4877.268 kb on + strand at 4877.272 kb on + strand at 4877.343 kb on + strand at 4877.383 kb on + strand at 4877.384 kb on - strand at 4877.384 kb on - strand at 4877.384 kb on - strand at 4877.465 kb on + strand at 4877.494 kb on - strand at 4877.494 kb on - strand at 4877.499 kb on - strand at 4877.517 kb on + strand at 4877.552 kb on + strand at 4877.554 kb on + strand at 4877.554 kb on + strand at 4877.554 kb on + strand at 4877.693 kb on + strand, within Echvi_4069 at 4877.693 kb on + strand, within Echvi_4069 at 4878.047 kb on + strand, within Echvi_4069 at 4878.121 kb on + strand, within Echvi_4069 at 4878.126 kb on + strand, within Echvi_4069 at 4878.208 kb on + strand, within Echvi_4069
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 4,876,613 + Echvi_4068 0.61 -0.9 4,876,613 + Echvi_4068 0.61 +0.1 4,876,702 + Echvi_4068 0.67 +0.1 4,876,765 + Echvi_4068 0.71 +0.4 4,876,865 - Echvi_4068 0.78 -0.6 4,876,880 + Echvi_4068 0.79 -1.8 4,877,083 - -0.3 4,877,184 - -0.2 4,877,194 - +1.2 4,877,206 - -0.2 4,877,256 + -0.9 4,877,268 + +0.9 4,877,272 + +1.2 4,877,343 + +0.2 4,877,383 + -0.2 4,877,384 - -1.1 4,877,384 - +0.4 4,877,384 - -0.6 4,877,465 + -0.3 4,877,494 - -0.9 4,877,494 - +0.1 4,877,499 - +1.4 4,877,517 + -1.4 4,877,552 + -2.6 4,877,554 + -0.3 4,877,554 + -0.5 4,877,554 + -0.7 4,877,693 + Echvi_4069 0.14 +1.0 4,877,693 + Echvi_4069 0.14 -1.1 4,878,047 + Echvi_4069 0.59 -1.0 4,878,121 + Echvi_4069 0.68 -0.7 4,878,126 + Echvi_4069 0.69 -1.4 4,878,208 + Echvi_4069 0.80 +0.2
Or see this region's nucleotide sequence