Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3485

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3483 and Echvi_3484 are separated by 131 nucleotidesEchvi_3484 and Echvi_3485 are separated by 182 nucleotidesEchvi_3485 and Echvi_3486 are separated by 101 nucleotides Echvi_3483: Echvi_3483 - tRNA (guanine-N(7)-)-methyltransferase, at 4,123,848 to 4,124,507 _3483 Echvi_3484: Echvi_3484 - hypothetical protein, at 4,124,639 to 4,125,193 _3484 Echvi_3485: Echvi_3485 - RNA polymerase sigma-70 factor, Bacteroides expansion family 1, at 4,125,376 to 4,125,945 _3485 Echvi_3486: Echvi_3486 - Fe2+-dicitrate sensor, membrane component, at 4,126,047 to 4,127,240 _3486 Position (kb) 4125 4126Strain fitness (log2 ratio) -1 0 1 2 3at 4124.408 kb on + strand, within Echvi_3483at 4124.502 kb on - strandat 4124.522 kb on - strandat 4124.578 kb on + strandat 4124.579 kb on - strandat 4124.625 kb on + strandat 4124.626 kb on - strandat 4124.626 kb on - strandat 4124.632 kb on + strandat 4124.727 kb on + strand, within Echvi_3484at 4124.744 kb on + strand, within Echvi_3484at 4124.746 kb on + strand, within Echvi_3484at 4124.879 kb on - strand, within Echvi_3484at 4124.922 kb on - strand, within Echvi_3484at 4124.922 kb on - strand, within Echvi_3484at 4124.922 kb on - strand, within Echvi_3484at 4124.922 kb on - strand, within Echvi_3484at 4124.939 kb on + strand, within Echvi_3484at 4124.966 kb on + strand, within Echvi_3484at 4124.985 kb on + strand, within Echvi_3484at 4124.985 kb on + strand, within Echvi_3484at 4125.016 kb on + strand, within Echvi_3484at 4125.053 kb on + strand, within Echvi_3484at 4125.084 kb on - strand, within Echvi_3484at 4125.085 kb on + strand, within Echvi_3484at 4125.116 kb on + strand, within Echvi_3484at 4125.116 kb on + strand, within Echvi_3484at 4125.117 kb on - strand, within Echvi_3484at 4125.154 kb on + strandat 4125.155 kb on - strandat 4125.155 kb on - strandat 4125.155 kb on - strandat 4125.156 kb on + strandat 4125.157 kb on - strandat 4125.157 kb on - strandat 4125.179 kb on - strandat 4125.199 kb on - strandat 4125.347 kb on + strandat 4125.347 kb on + strandat 4125.348 kb on - strandat 4125.348 kb on - strandat 4125.354 kb on - strandat 4125.464 kb on + strand, within Echvi_3485at 4125.577 kb on + strand, within Echvi_3485at 4125.577 kb on + strand, within Echvi_3485at 4125.578 kb on - strand, within Echvi_3485at 4125.578 kb on - strand, within Echvi_3485at 4125.739 kb on + strand, within Echvi_3485at 4125.740 kb on - strand, within Echvi_3485at 4125.772 kb on - strand, within Echvi_3485at 4125.850 kb on - strand, within Echvi_3485at 4125.878 kb on + strand, within Echvi_3485at 4125.916 kb on + strandat 4126.062 kb on + strandat 4126.062 kb on + strandat 4126.062 kb on + strandat 4126.067 kb on - strandat 4126.067 kb on - strandat 4126.067 kb on - strandat 4126.071 kb on + strandat 4126.071 kb on + strandat 4126.071 kb on + strandat 4126.072 kb on - strandat 4126.074 kb on + strandat 4126.074 kb on + strandat 4126.074 kb on + strandat 4126.112 kb on + strandat 4126.112 kb on + strandat 4126.174 kb on - strand, within Echvi_3486at 4126.174 kb on - strand, within Echvi_3486at 4126.174 kb on - strand, within Echvi_3486at 4126.176 kb on + strand, within Echvi_3486at 4126.176 kb on + strand, within Echvi_3486at 4126.176 kb on + strand, within Echvi_3486at 4126.177 kb on - strand, within Echvi_3486at 4126.177 kb on - strand, within Echvi_3486at 4126.232 kb on + strand, within Echvi_3486at 4126.296 kb on - strand, within Echvi_3486at 4126.323 kb on + strand, within Echvi_3486at 4126.323 kb on + strand, within Echvi_3486at 4126.324 kb on - strand, within Echvi_3486at 4126.324 kb on - strand, within Echvi_3486at 4126.343 kb on - strand, within Echvi_3486at 4126.413 kb on - strand, within Echvi_3486at 4126.565 kb on - strand, within Echvi_3486at 4126.641 kb on + strand, within Echvi_3486at 4126.642 kb on - strand, within Echvi_3486at 4126.652 kb on - strand, within Echvi_3486at 4126.716 kb on - strand, within Echvi_3486at 4126.716 kb on - strand, within Echvi_3486at 4126.773 kb on - strand, within Echvi_3486at 4126.795 kb on + strand, within Echvi_3486at 4126.817 kb on - strand, within Echvi_3486at 4126.838 kb on + strand, within Echvi_3486at 4126.839 kb on - strand, within Echvi_3486at 4126.842 kb on - strand, within Echvi_3486at 4126.851 kb on + strand, within Echvi_3486at 4126.852 kb on - strand, within Echvi_3486at 4126.852 kb on - strand, within Echvi_3486at 4126.852 kb on - strand, within Echvi_3486at 4126.904 kb on - strand, within Echvi_3486at 4126.908 kb on + strand, within Echvi_3486at 4126.908 kb on + strand, within Echvi_3486at 4126.908 kb on + strand, within Echvi_3486at 4126.908 kb on + strand, within Echvi_3486at 4126.908 kb on + strand, within Echvi_3486at 4126.909 kb on - strand, within Echvi_3486at 4126.909 kb on - strand, within Echvi_3486at 4126.909 kb on - strand, within Echvi_3486at 4126.909 kb on - strand, within Echvi_3486at 4126.909 kb on - strandat 4126.909 kb on - strand, within Echvi_3486at 4126.910 kb on + strand, within Echvi_3486at 4126.910 kb on + strand, within Echvi_3486at 4126.910 kb on + strand, within Echvi_3486at 4126.911 kb on - strand, within Echvi_3486at 4126.911 kb on - strand, within Echvi_3486at 4126.911 kb on - strand, within Echvi_3486at 4126.911 kb on - strand, within Echvi_3486at 4126.911 kb on - strand, within Echvi_3486at 4126.911 kb on - strand, within Echvi_3486at 4126.912 kb on + strand, within Echvi_3486at 4126.913 kb on - strand, within Echvi_3486at 4126.913 kb on - strand, within Echvi_3486at 4126.929 kb on - strand, within Echvi_3486

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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4,124,408 + Echvi_3483 0.85 -0.4
4,124,502 - +0.3
4,124,522 - +0.0
4,124,578 + +0.4
4,124,579 - +0.8
4,124,625 + -0.6
4,124,626 - -0.4
4,124,626 - -1.1
4,124,632 + +0.4
4,124,727 + Echvi_3484 0.16 +0.2
4,124,744 + Echvi_3484 0.19 +3.2
4,124,746 + Echvi_3484 0.19 -0.4
4,124,879 - Echvi_3484 0.43 -0.3
4,124,922 - Echvi_3484 0.51 -0.1
4,124,922 - Echvi_3484 0.51 -0.3
4,124,922 - Echvi_3484 0.51 +1.8
4,124,922 - Echvi_3484 0.51 +1.1
4,124,939 + Echvi_3484 0.54 +0.6
4,124,966 + Echvi_3484 0.59 +0.3
4,124,985 + Echvi_3484 0.62 -0.1
4,124,985 + Echvi_3484 0.62 +0.0
4,125,016 + Echvi_3484 0.68 -0.7
4,125,053 + Echvi_3484 0.75 +0.8
4,125,084 - Echvi_3484 0.80 -1.4
4,125,085 + Echvi_3484 0.80 +0.0
4,125,116 + Echvi_3484 0.86 +1.2
4,125,116 + Echvi_3484 0.86 -1.4
4,125,117 - Echvi_3484 0.86 +0.8
4,125,154 + -1.5
4,125,155 - -0.4
4,125,155 - -0.5
4,125,155 - +0.6
4,125,156 + -1.6
4,125,157 - +0.6
4,125,157 - +0.6
4,125,179 - -0.3
4,125,199 - -0.1
4,125,347 + -0.6
4,125,347 + +0.0
4,125,348 - +0.9
4,125,348 - +0.7
4,125,354 - +0.7
4,125,464 + Echvi_3485 0.15 -0.7
4,125,577 + Echvi_3485 0.35 -1.6
4,125,577 + Echvi_3485 0.35 -1.4
4,125,578 - Echvi_3485 0.35 -0.3
4,125,578 - Echvi_3485 0.35 -0.5
4,125,739 + Echvi_3485 0.64 -0.9
4,125,740 - Echvi_3485 0.64 -0.8
4,125,772 - Echvi_3485 0.69 -0.5
4,125,850 - Echvi_3485 0.83 -0.9
4,125,878 + Echvi_3485 0.88 +0.7
4,125,916 + -0.3
4,126,062 + -0.1
4,126,062 + -0.1
4,126,062 + -0.7
4,126,067 - -1.2
4,126,067 - +1.1
4,126,067 - +1.6
4,126,071 + -0.8
4,126,071 + -0.4
4,126,071 + -0.2
4,126,072 - -0.5
4,126,074 + -1.0
4,126,074 + +1.0
4,126,074 + +0.2
4,126,112 + +0.3
4,126,112 + +0.0
4,126,174 - Echvi_3486 0.11 +0.8
4,126,174 - Echvi_3486 0.11 +0.0
4,126,174 - Echvi_3486 0.11 +0.4
4,126,176 + Echvi_3486 0.11 -0.6
4,126,176 + Echvi_3486 0.11 +0.6
4,126,176 + Echvi_3486 0.11 -0.3
4,126,177 - Echvi_3486 0.11 +0.4
4,126,177 - Echvi_3486 0.11 +0.9
4,126,232 + Echvi_3486 0.15 +0.2
4,126,296 - Echvi_3486 0.21 +2.6
4,126,323 + Echvi_3486 0.23 +0.1
4,126,323 + Echvi_3486 0.23 +2.6
4,126,324 - Echvi_3486 0.23 -0.1
4,126,324 - Echvi_3486 0.23 -0.9
4,126,343 - Echvi_3486 0.25 +0.8
4,126,413 - Echvi_3486 0.31 -0.1
4,126,565 - Echvi_3486 0.43 -1.0
4,126,641 + Echvi_3486 0.50 +1.1
4,126,642 - Echvi_3486 0.50 +0.6
4,126,652 - Echvi_3486 0.51 -0.6
4,126,716 - Echvi_3486 0.56 -0.1
4,126,716 - Echvi_3486 0.56 +0.6
4,126,773 - Echvi_3486 0.61 -1.0
4,126,795 + Echvi_3486 0.63 +0.2
4,126,817 - Echvi_3486 0.64 +0.0
4,126,838 + Echvi_3486 0.66 +0.4
4,126,839 - Echvi_3486 0.66 +0.0
4,126,842 - Echvi_3486 0.67 -0.4
4,126,851 + Echvi_3486 0.67 -0.8
4,126,852 - Echvi_3486 0.67 +1.1
4,126,852 - Echvi_3486 0.67 -0.8
4,126,852 - Echvi_3486 0.67 +1.0
4,126,904 - Echvi_3486 0.72 -0.6
4,126,908 + Echvi_3486 0.72 -0.4
4,126,908 + Echvi_3486 0.72 +0.2
4,126,908 + Echvi_3486 0.72 +0.2
4,126,908 + Echvi_3486 0.72 +0.9
4,126,908 + Echvi_3486 0.72 +0.2
4,126,909 - Echvi_3486 0.72 -1.0
4,126,909 - Echvi_3486 0.72 -1.1
4,126,909 - Echvi_3486 0.72 +1.4
4,126,909 - Echvi_3486 0.72 -0.4
4,126,909 - +1.6
4,126,909 - Echvi_3486 0.72 -0.0
4,126,910 + Echvi_3486 0.72 +0.6
4,126,910 + Echvi_3486 0.72 -0.3
4,126,910 + Echvi_3486 0.72 +0.9
4,126,911 - Echvi_3486 0.72 +0.0
4,126,911 - Echvi_3486 0.72 -0.3
4,126,911 - Echvi_3486 0.72 -0.6
4,126,911 - Echvi_3486 0.72 +1.0
4,126,911 - Echvi_3486 0.72 -1.1
4,126,911 - Echvi_3486 0.72 +0.7
4,126,912 + Echvi_3486 0.72 -1.0
4,126,913 - Echvi_3486 0.73 -0.2
4,126,913 - Echvi_3486 0.73 -0.8
4,126,929 - Echvi_3486 0.74 -1.0

Or see this region's nucleotide sequence