Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2825 and Echvi_2826 overlap by 4 nucleotides Echvi_2826 and Echvi_2827 overlap by 4 nucleotides Echvi_2827 and Echvi_2828 are separated by 57 nucleotides
Echvi_2825: Echvi_2825 - Peptidase family C25., at 3,381,218 to 3,384,502
_2825
Echvi_2826: Echvi_2826 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 3,384,499 to 3,385,191
_2826
Echvi_2827: Echvi_2827 - Zn-dependent hydrolases, including glyoxylases, at 3,385,188 to 3,385,841
_2827
Echvi_2828: Echvi_2828 - Glycine/D-amino acid oxidases (deaminating), at 3,385,899 to 3,386,951
_2828
Position (kb)
3385
3386 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3384.297 kb on - strand at 3384.315 kb on + strand at 3384.316 kb on - strand at 3384.348 kb on - strand at 3384.412 kb on - strand at 3384.465 kb on - strand at 3385.275 kb on + strand, within Echvi_2827 at 3385.362 kb on - strand, within Echvi_2827 at 3385.362 kb on - strand, within Echvi_2827 at 3385.420 kb on - strand, within Echvi_2827 at 3385.501 kb on - strand, within Echvi_2827 at 3385.518 kb on - strand, within Echvi_2827 at 3385.518 kb on - strand, within Echvi_2827 at 3385.518 kb on - strand, within Echvi_2827 at 3385.529 kb on - strand, within Echvi_2827 at 3385.556 kb on - strand, within Echvi_2827 at 3385.656 kb on - strand, within Echvi_2827 at 3385.742 kb on - strand, within Echvi_2827 at 3385.793 kb on - strand at 3385.793 kb on - strand at 3385.793 kb on - strand at 3385.831 kb on - strand at 3385.873 kb on - strand at 3385.873 kb on - strand at 3385.965 kb on - strand at 3386.019 kb on - strand, within Echvi_2828 at 3386.113 kb on - strand, within Echvi_2828 at 3386.152 kb on - strand, within Echvi_2828 at 3386.167 kb on - strand, within Echvi_2828 at 3386.275 kb on + strand, within Echvi_2828 at 3386.290 kb on - strand, within Echvi_2828 at 3386.333 kb on + strand, within Echvi_2828 at 3386.333 kb on + strand, within Echvi_2828 at 3386.333 kb on + strand, within Echvi_2828 at 3386.333 kb on + strand, within Echvi_2828 at 3386.333 kb on + strand, within Echvi_2828 at 3386.334 kb on - strand, within Echvi_2828 at 3386.334 kb on - strand, within Echvi_2828 at 3386.334 kb on - strand, within Echvi_2828 at 3386.334 kb on - strand, within Echvi_2828 at 3386.351 kb on + strand, within Echvi_2828 at 3386.351 kb on + strand, within Echvi_2828 at 3386.352 kb on - strand, within Echvi_2828 at 3386.562 kb on - strand, within Echvi_2828 at 3386.583 kb on - strand, within Echvi_2828 at 3386.583 kb on - strand, within Echvi_2828 at 3386.583 kb on - strand, within Echvi_2828 at 3386.594 kb on + strand, within Echvi_2828 at 3386.637 kb on + strand, within Echvi_2828 at 3386.637 kb on + strand, within Echvi_2828 at 3386.638 kb on - strand, within Echvi_2828 at 3386.638 kb on - strand, within Echvi_2828 at 3386.666 kb on + strand, within Echvi_2828 at 3386.690 kb on - strand, within Echvi_2828 at 3386.765 kb on + strand, within Echvi_2828 at 3386.765 kb on + strand, within Echvi_2828 at 3386.765 kb on + strand, within Echvi_2828 at 3386.818 kb on - strand, within Echvi_2828 at 3386.818 kb on - strand, within Echvi_2828 at 3386.819 kb on + strand, within Echvi_2828
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 3,384,297 - +0.4 3,384,315 + +0.0 3,384,316 - -0.8 3,384,348 - +0.7 3,384,412 - +0.4 3,384,465 - -1.9 3,385,275 + Echvi_2827 0.13 +0.0 3,385,362 - Echvi_2827 0.27 -0.2 3,385,362 - Echvi_2827 0.27 -0.7 3,385,420 - Echvi_2827 0.35 -1.1 3,385,501 - Echvi_2827 0.48 -1.5 3,385,518 - Echvi_2827 0.50 +0.0 3,385,518 - Echvi_2827 0.50 -0.1 3,385,518 - Echvi_2827 0.50 +1.4 3,385,529 - Echvi_2827 0.52 -0.5 3,385,556 - Echvi_2827 0.56 -0.9 3,385,656 - Echvi_2827 0.72 -0.8 3,385,742 - Echvi_2827 0.85 +0.4 3,385,793 - +0.4 3,385,793 - -0.8 3,385,793 - +0.0 3,385,831 - -1.0 3,385,873 - +0.3 3,385,873 - +0.2 3,385,965 - +2.6 3,386,019 - Echvi_2828 0.11 +0.1 3,386,113 - Echvi_2828 0.20 +0.3 3,386,152 - Echvi_2828 0.24 -0.9 3,386,167 - Echvi_2828 0.25 -1.2 3,386,275 + Echvi_2828 0.36 -0.7 3,386,290 - Echvi_2828 0.37 -0.8 3,386,333 + Echvi_2828 0.41 -0.3 3,386,333 + Echvi_2828 0.41 +0.3 3,386,333 + Echvi_2828 0.41 +0.7 3,386,333 + Echvi_2828 0.41 -1.3 3,386,333 + Echvi_2828 0.41 +2.8 3,386,334 - Echvi_2828 0.41 -0.2 3,386,334 - Echvi_2828 0.41 +1.1 3,386,334 - Echvi_2828 0.41 +0.6 3,386,334 - Echvi_2828 0.41 +0.2 3,386,351 + Echvi_2828 0.43 +2.6 3,386,351 + Echvi_2828 0.43 -0.5 3,386,352 - Echvi_2828 0.43 +0.3 3,386,562 - Echvi_2828 0.63 +0.7 3,386,583 - Echvi_2828 0.65 -0.2 3,386,583 - Echvi_2828 0.65 +0.1 3,386,583 - Echvi_2828 0.65 -0.3 3,386,594 + Echvi_2828 0.66 -1.2 3,386,637 + Echvi_2828 0.70 +0.9 3,386,637 + Echvi_2828 0.70 +0.1 3,386,638 - Echvi_2828 0.70 +0.6 3,386,638 - Echvi_2828 0.70 -0.7 3,386,666 + Echvi_2828 0.73 -0.2 3,386,690 - Echvi_2828 0.75 -0.3 3,386,765 + Echvi_2828 0.82 +0.8 3,386,765 + Echvi_2828 0.82 +0.4 3,386,765 + Echvi_2828 0.82 +0.6 3,386,818 - Echvi_2828 0.87 +1.2 3,386,818 - Echvi_2828 0.87 +0.3 3,386,819 + Echvi_2828 0.87 +0.6
Or see this region's nucleotide sequence