Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1531 and Echvi_1532 are separated by 37 nucleotides Echvi_1532 and Echvi_1533 overlap by 26 nucleotides Echvi_1533 and Echvi_1534 overlap by 17 nucleotides Echvi_1534 and Echvi_1535 are separated by 74 nucleotides
Echvi_1531: Echvi_1531 - putative TIM-barrel protein, nifR3 family, at 1,755,914 to 1,756,915
_1531
Echvi_1532: Echvi_1532 - CAAX amino terminal protease family., at 1,756,953 to 1,757,912
_1532
Echvi_1533: Echvi_1533 - hypothetical protein, at 1,757,887 to 1,758,093
_1533
Echvi_1534: Echvi_1534 - CDP-diglyceride synthetase, at 1,758,077 to 1,758,916
_1534
Echvi_1535: Echvi_1535 - Glutamate dehydrogenase/leucine dehydrogenase, at 1,758,991 to 1,760,268
_1535
Position (kb)
1757
1758
1759 Strain fitness (log2 ratio)
-1
0
1
2 at 1756.910 kb on + strand at 1757.967 kb on + strand, within Echvi_1533 at 1757.967 kb on + strand, within Echvi_1533 at 1757.968 kb on - strand, within Echvi_1533 at 1758.022 kb on + strand, within Echvi_1533 at 1758.023 kb on - strand, within Echvi_1533 at 1758.072 kb on + strand, within Echvi_1533 at 1758.923 kb on + strand at 1758.970 kb on + strand at 1758.974 kb on + strand at 1758.990 kb on + strand at 1759.059 kb on + strand at 1759.064 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 1,756,910 + +0.8 1,757,967 + Echvi_1533 0.39 -1.7 1,757,967 + Echvi_1533 0.39 -0.5 1,757,968 - Echvi_1533 0.39 +1.9 1,758,022 + Echvi_1533 0.65 -0.2 1,758,023 - Echvi_1533 0.66 -0.8 1,758,072 + Echvi_1533 0.89 -1.0 1,758,923 + +0.5 1,758,970 + +0.2 1,758,974 + +0.1 1,758,990 + +0.5 1,759,059 + -0.5 1,759,064 + +0.9
Or see this region's nucleotide sequence