Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0815 and Echvi_0816 are separated by 139 nucleotides Echvi_0816 and Echvi_0817 overlap by 3 nucleotides Echvi_0817 and Echvi_0818 are separated by 204 nucleotides
Echvi_0815: Echvi_0815 - GTP-binding protein Era, at 934,058 to 934,948
_0815
Echvi_0816: Echvi_0816 - tRNA, at 935,088 to 935,163
_0816
Echvi_0817: Echvi_0817 - hypothetical protein, at 935,161 to 935,358
_0817
Echvi_0818: Echvi_0818 - Uncharacterized conserved protein, at 935,563 to 936,705
_0818
Position (kb) 935
936 Strain fitness (log2 ratio) -2
-1
0
1
2 at 935.320 kb on + strand, within Echvi_0817 at 935.320 kb on + strand, within Echvi_0817 at 935.392 kb on - strand at 935.392 kb on - strand at 935.433 kb on + strand at 935.438 kb on - strand at 935.443 kb on + strand at 935.616 kb on + strand at 935.637 kb on - strand at 935.662 kb on - strand at 935.668 kb on - strand at 935.714 kb on + strand, within Echvi_0818 at 935.721 kb on + strand, within Echvi_0818 at 935.721 kb on + strand, within Echvi_0818 at 935.721 kb on + strand, within Echvi_0818 at 935.722 kb on - strand, within Echvi_0818 at 935.722 kb on - strand, within Echvi_0818 at 935.742 kb on - strand, within Echvi_0818 at 935.756 kb on + strand, within Echvi_0818 at 935.756 kb on + strand, within Echvi_0818 at 935.757 kb on - strand, within Echvi_0818 at 935.757 kb on - strand, within Echvi_0818 at 935.757 kb on - strand, within Echvi_0818 at 935.968 kb on + strand, within Echvi_0818 at 935.982 kb on - strand, within Echvi_0818 at 936.013 kb on - strand, within Echvi_0818 at 936.105 kb on - strand, within Echvi_0818 at 936.161 kb on + strand, within Echvi_0818 at 936.162 kb on - strand, within Echvi_0818 at 936.170 kb on + strand, within Echvi_0818 at 936.171 kb on - strand, within Echvi_0818 at 936.252 kb on + strand, within Echvi_0818 at 936.253 kb on - strand, within Echvi_0818 at 936.270 kb on + strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.271 kb on - strand, within Echvi_0818 at 936.304 kb on + strand, within Echvi_0818 at 936.305 kb on - strand, within Echvi_0818 at 936.305 kb on - strand, within Echvi_0818 at 936.305 kb on - strand, within Echvi_0818 at 936.307 kb on + strand, within Echvi_0818 at 936.307 kb on + strand, within Echvi_0818 at 936.308 kb on - strand, within Echvi_0818 at 936.308 kb on - strand, within Echvi_0818 at 936.308 kb on - strand, within Echvi_0818 at 936.347 kb on + strand, within Echvi_0818 at 936.347 kb on + strand, within Echvi_0818 at 936.348 kb on - strand, within Echvi_0818 at 936.348 kb on - strand, within Echvi_0818
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 935,320 + Echvi_0817 0.80 -0.8 935,320 + Echvi_0817 0.80 -0.5 935,392 - -0.6 935,392 - -1.6 935,433 + -1.1 935,438 - +0.3 935,443 + +2.1 935,616 + -0.4 935,637 - -0.2 935,662 - -0.4 935,668 - +0.2 935,714 + Echvi_0818 0.13 +0.5 935,721 + Echvi_0818 0.14 +0.1 935,721 + Echvi_0818 0.14 +0.3 935,721 + Echvi_0818 0.14 +0.6 935,722 - Echvi_0818 0.14 +0.3 935,722 - Echvi_0818 0.14 -0.1 935,742 - Echvi_0818 0.16 -0.6 935,756 + Echvi_0818 0.17 +1.1 935,756 + Echvi_0818 0.17 +0.9 935,757 - Echvi_0818 0.17 +0.0 935,757 - Echvi_0818 0.17 +0.6 935,757 - Echvi_0818 0.17 +0.2 935,968 + Echvi_0818 0.35 +0.1 935,982 - Echvi_0818 0.37 -1.8 936,013 - Echvi_0818 0.39 +1.9 936,105 - Echvi_0818 0.47 -0.2 936,161 + Echvi_0818 0.52 +0.3 936,162 - Echvi_0818 0.52 -0.1 936,170 + Echvi_0818 0.53 +0.2 936,171 - Echvi_0818 0.53 -0.2 936,252 + Echvi_0818 0.60 +0.3 936,253 - Echvi_0818 0.60 +0.4 936,270 + Echvi_0818 0.62 -0.3 936,271 - Echvi_0818 0.62 +0.1 936,271 - Echvi_0818 0.62 -2.1 936,271 - Echvi_0818 0.62 +0.0 936,271 - Echvi_0818 0.62 -0.4 936,271 - Echvi_0818 0.62 -0.8 936,271 - Echvi_0818 0.62 -2.4 936,304 + Echvi_0818 0.65 +0.0 936,305 - Echvi_0818 0.65 +0.3 936,305 - Echvi_0818 0.65 -0.3 936,305 - Echvi_0818 0.65 -0.1 936,307 + Echvi_0818 0.65 -1.6 936,307 + Echvi_0818 0.65 -0.4 936,308 - Echvi_0818 0.65 -2.5 936,308 - Echvi_0818 0.65 -0.8 936,308 - Echvi_0818 0.65 +0.5 936,347 + Echvi_0818 0.69 +0.1 936,347 + Echvi_0818 0.69 -0.6 936,348 - Echvi_0818 0.69 -0.3 936,348 - Echvi_0818 0.69 -0.6
Or see this region's nucleotide sequence