Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0798

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0795 and Echvi_0796 are separated by 88 nucleotidesEchvi_0796 and Echvi_0797 overlap by 41 nucleotidesEchvi_0797 and Echvi_0798 are separated by 130 nucleotidesEchvi_0798 and Echvi_0799 overlap by 59 nucleotidesEchvi_0799 and Echvi_0800 are separated by 76 nucleotides Echvi_0795: Echvi_0795 - Universal stress protein UspA and related nucleotide-binding proteins, at 908,605 to 909,462 _0795 Echvi_0796: Echvi_0796 - hypothetical protein, at 909,551 to 909,703 _0796 Echvi_0797: Echvi_0797 - Uncharacterised protein family (UPF0158)., at 909,663 to 910,103 _0797 Echvi_0798: Echvi_0798 - hypothetical protein, at 910,234 to 910,425 _0798 Echvi_0799: Echvi_0799 - Uncharacterized conserved protein, at 910,367 to 911,167 _0799 Echvi_0800: Echvi_0800 - Cytochrome c biogenesis factor, at 911,244 to 913,772 _0800 Position (kb) 910 911Strain fitness (log2 ratio) -2 -1 0 1 2at 909.291 kb on + strand, within Echvi_0795at 909.292 kb on - strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.303 kb on + strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.304 kb on - strand, within Echvi_0795at 909.485 kb on - strandat 909.485 kb on - strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.487 kb on + strandat 909.488 kb on - strandat 909.488 kb on - strandat 909.500 kb on + strandat 909.518 kb on + strandat 909.526 kb on + strandat 909.593 kb on + strand, within Echvi_0796at 909.655 kb on + strand, within Echvi_0796at 909.655 kb on + strand, within Echvi_0796at 909.673 kb on - strandat 909.677 kb on + strandat 909.678 kb on - strandat 909.678 kb on - strandat 909.682 kb on + strandat 909.682 kb on + strandat 909.682 kb on + strandat 909.683 kb on - strandat 909.683 kb on - strandat 909.683 kb on - strandat 909.687 kb on - strandat 909.749 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.751 kb on + strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.752 kb on - strand, within Echvi_0797at 909.798 kb on - strand, within Echvi_0797at 909.817 kb on + strand, within Echvi_0797at 909.817 kb on + strand, within Echvi_0797at 909.873 kb on + strand, within Echvi_0797at 909.873 kb on + strand, within Echvi_0797at 909.874 kb on - strand, within Echvi_0797at 910.036 kb on + strand, within Echvi_0797at 910.036 kb on + strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.037 kb on - strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.041 kb on + strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.042 kb on - strand, within Echvi_0797at 910.129 kb on + strandat 910.130 kb on - strandat 910.144 kb on + strandat 910.144 kb on + strandat 910.263 kb on + strand, within Echvi_0798at 910.265 kb on + strand, within Echvi_0798at 910.265 kb on + strand, within Echvi_0798at 910.266 kb on - strand, within Echvi_0798at 910.266 kb on - strand, within Echvi_0798at 910.282 kb on + strand, within Echvi_0798at 910.283 kb on - strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.307 kb on + strand, within Echvi_0798at 910.308 kb on - strand, within Echvi_0798at 910.384 kb on + strandat 910.427 kb on - strandat 910.428 kb on + strandat 910.429 kb on - strandat 910.429 kb on - strandat 910.448 kb on + strand, within Echvi_0799at 910.537 kb on + strand, within Echvi_0799at 910.538 kb on - strand, within Echvi_0799at 910.541 kb on - strand, within Echvi_0799at 910.556 kb on - strand, within Echvi_0799at 910.640 kb on + strand, within Echvi_0799at 910.640 kb on + strand, within Echvi_0799at 910.641 kb on - strand, within Echvi_0799at 910.670 kb on - strand, within Echvi_0799at 910.678 kb on - strand, within Echvi_0799at 910.678 kb on - strand, within Echvi_0799at 910.757 kb on + strand, within Echvi_0799at 910.758 kb on - strand, within Echvi_0799at 910.820 kb on - strand, within Echvi_0799at 910.821 kb on + strand, within Echvi_0799at 910.821 kb on + strand, within Echvi_0799at 910.822 kb on - strand, within Echvi_0799at 910.837 kb on - strand, within Echvi_0799at 910.841 kb on + strand, within Echvi_0799at 910.842 kb on - strand, within Echvi_0799at 910.842 kb on - strand, within Echvi_0799at 910.846 kb on + strand, within Echvi_0799at 910.847 kb on - strand, within Echvi_0799at 910.895 kb on + strand, within Echvi_0799at 910.896 kb on - strand, within Echvi_0799at 910.896 kb on - strand, within Echvi_0799at 910.896 kb on - strand, within Echvi_0799at 910.914 kb on - strand, within Echvi_0799at 910.930 kb on + strand, within Echvi_0799at 910.931 kb on - strand, within Echvi_0799at 910.931 kb on - strand, within Echvi_0799at 910.951 kb on - strand, within Echvi_0799at 910.951 kb on - strand, within Echvi_0799at 910.963 kb on + strand, within Echvi_0799at 910.963 kb on + strand, within Echvi_0799at 911.004 kb on + strand, within Echvi_0799at 911.005 kb on - strand, within Echvi_0799at 911.050 kb on - strand, within Echvi_0799at 911.065 kb on + strand, within Echvi_0799at 911.065 kb on + strand, within Echvi_0799at 911.129 kb on + strandat 911.129 kb on + strandat 911.129 kb on + strandat 911.130 kb on - strandat 911.130 kb on - strandat 911.131 kb on + strandat 911.131 kb on + strandat 911.132 kb on - strandat 911.134 kb on + strandat 911.135 kb on - strandat 911.135 kb on - strandat 911.135 kb on - strandat 911.136 kb on + strandat 911.136 kb on + strandat 911.136 kb on + strandat 911.136 kb on + strandat 911.136 kb on + strandat 911.137 kb on - strandat 911.177 kb on - strandat 911.190 kb on - strandat 911.195 kb on - strandat 911.195 kb on - strandat 911.271 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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909,291 + Echvi_0795 0.80 -0.7
909,292 - Echvi_0795 0.80 -0.7
909,303 + Echvi_0795 0.81 -0.0
909,303 + Echvi_0795 0.81 +1.1
909,304 - Echvi_0795 0.81 -0.1
909,304 - Echvi_0795 0.81 -1.4
909,304 - Echvi_0795 0.81 -1.1
909,304 - Echvi_0795 0.81 -0.7
909,304 - Echvi_0795 0.81 -0.7
909,485 - +1.5
909,485 - +0.4
909,487 + -0.7
909,487 + +0.3
909,487 + -0.3
909,488 - +0.3
909,488 - +0.0
909,500 + -0.9
909,518 + -0.2
909,526 + +0.4
909,593 + Echvi_0796 0.27 -0.6
909,655 + Echvi_0796 0.68 -1.1
909,655 + Echvi_0796 0.68 +0.3
909,673 - -0.1
909,677 + -0.1
909,678 - -0.3
909,678 - -0.7
909,682 + +0.0
909,682 + +0.9
909,682 + -1.1
909,683 - -1.0
909,683 - +0.3
909,683 - -0.4
909,687 - -0.2
909,749 + Echvi_0797 0.20 -0.2
909,751 + Echvi_0797 0.20 +0.0
909,751 + Echvi_0797 0.20 -0.3
909,751 + Echvi_0797 0.20 +0.3
909,751 + Echvi_0797 0.20 -0.3
909,751 + Echvi_0797 0.20 +0.1
909,752 - Echvi_0797 0.20 +1.9
909,752 - Echvi_0797 0.20 -0.4
909,752 - Echvi_0797 0.20 -0.2
909,798 - Echvi_0797 0.31 +0.5
909,817 + Echvi_0797 0.35 -1.9
909,817 + Echvi_0797 0.35 -0.5
909,873 + Echvi_0797 0.48 -2.3
909,873 + Echvi_0797 0.48 +0.3
909,874 - Echvi_0797 0.48 +0.9
910,036 + Echvi_0797 0.85 +1.4
910,036 + Echvi_0797 0.85 +0.8
910,037 - Echvi_0797 0.85 -0.0
910,037 - Echvi_0797 0.85 -0.1
910,037 - Echvi_0797 0.85 +0.1
910,041 + Echvi_0797 0.86 -0.1
910,041 + Echvi_0797 0.86 -0.7
910,041 + Echvi_0797 0.86 +0.2
910,042 - Echvi_0797 0.86 +0.1
910,042 - Echvi_0797 0.86 +0.1
910,042 - Echvi_0797 0.86 -0.7
910,042 - Echvi_0797 0.86 -0.1
910,042 - Echvi_0797 0.86 -0.2
910,129 + +0.7
910,130 - -0.1
910,144 + -0.1
910,144 + +0.1
910,263 + Echvi_0798 0.15 -0.4
910,265 + Echvi_0798 0.16 +0.3
910,265 + Echvi_0798 0.16 -0.8
910,266 - Echvi_0798 0.17 +0.1
910,266 - Echvi_0798 0.17 -0.7
910,282 + Echvi_0798 0.25 -0.8
910,283 - Echvi_0798 0.26 -1.1
910,307 + Echvi_0798 0.38 -1.6
910,307 + Echvi_0798 0.38 -0.4
910,307 + Echvi_0798 0.38 -0.2
910,308 - Echvi_0798 0.39 +1.2
910,384 + +2.3
910,427 - -0.5
910,428 + +0.7
910,429 - -0.6
910,429 - +0.1
910,448 + Echvi_0799 0.10 +1.6
910,537 + Echvi_0799 0.21 +0.5
910,538 - Echvi_0799 0.21 +0.1
910,541 - Echvi_0799 0.22 +2.3
910,556 - Echvi_0799 0.24 +1.7
910,640 + Echvi_0799 0.34 +0.2
910,640 + Echvi_0799 0.34 +0.3
910,641 - Echvi_0799 0.34 +0.0
910,670 - Echvi_0799 0.38 -0.5
910,678 - Echvi_0799 0.39 +0.0
910,678 - Echvi_0799 0.39 -0.4
910,757 + Echvi_0799 0.49 -0.2
910,758 - Echvi_0799 0.49 +1.7
910,820 - Echvi_0799 0.57 -0.1
910,821 + Echvi_0799 0.57 -0.6
910,821 + Echvi_0799 0.57 -0.1
910,822 - Echvi_0799 0.57 +0.1
910,837 - Echvi_0799 0.59 +0.1
910,841 + Echvi_0799 0.59 -0.3
910,842 - Echvi_0799 0.59 -1.3
910,842 - Echvi_0799 0.59 -0.8
910,846 + Echvi_0799 0.60 -0.0
910,847 - Echvi_0799 0.60 +0.2
910,895 + Echvi_0799 0.66 +1.2
910,896 - Echvi_0799 0.66 -1.3
910,896 - Echvi_0799 0.66 -0.7
910,896 - Echvi_0799 0.66 +1.1
910,914 - Echvi_0799 0.68 +0.4
910,930 + Echvi_0799 0.70 +0.0
910,931 - Echvi_0799 0.70 +0.6
910,931 - Echvi_0799 0.70 +1.3
910,951 - Echvi_0799 0.73 +0.0
910,951 - Echvi_0799 0.73 -1.0
910,963 + Echvi_0799 0.74 +0.9
910,963 + Echvi_0799 0.74 -1.4
911,004 + Echvi_0799 0.80 +0.8
911,005 - Echvi_0799 0.80 +0.3
911,050 - Echvi_0799 0.85 +0.4
911,065 + Echvi_0799 0.87 +0.2
911,065 + Echvi_0799 0.87 -0.4
911,129 + +0.4
911,129 + -1.4
911,129 + -0.1
911,130 - +1.2
911,130 - -0.2
911,131 + -0.1
911,131 + -0.6
911,132 - -0.1
911,134 + -0.3
911,135 - -0.8
911,135 - +0.9
911,135 - +1.1
911,136 + -0.0
911,136 + +1.3
911,136 + -0.8
911,136 + -1.5
911,136 + -1.0
911,137 - +0.2
911,177 - +0.3
911,190 - +0.1
911,195 - -0.1
911,195 - -0.3
911,271 + -0.1

Or see this region's nucleotide sequence