Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0754

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0753 and Echvi_0754 are separated by 84 nucleotides Echvi_0753: Echvi_0753 - Alpha-amylase/alpha-mannosidase, at 844,003 to 845,214 _0753 Echvi_0754: Echvi_0754 - ATP-dependent chaperone ClpB, at 845,299 to 847,911 _0754 Position (kb) 845 846 847 848Strain fitness (log2 ratio) -2 -1 0 1 2at 844.311 kb on - strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.321 kb on + strand, within Echvi_0753at 844.322 kb on - strand, within Echvi_0753at 844.416 kb on + strand, within Echvi_0753at 844.416 kb on + strand, within Echvi_0753at 844.417 kb on - strand, within Echvi_0753at 844.427 kb on + strand, within Echvi_0753at 844.521 kb on + strand, within Echvi_0753at 844.521 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.546 kb on + strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.547 kb on - strand, within Echvi_0753at 844.553 kb on - strand, within Echvi_0753at 844.660 kb on - strand, within Echvi_0753at 844.662 kb on + strand, within Echvi_0753at 844.663 kb on - strand, within Echvi_0753at 844.722 kb on - strand, within Echvi_0753at 844.725 kb on + strand, within Echvi_0753at 844.732 kb on + strand, within Echvi_0753at 844.733 kb on - strand, within Echvi_0753at 844.877 kb on + strand, within Echvi_0753at 845.033 kb on - strand, within Echvi_0753at 845.033 kb on - strand, within Echvi_0753at 845.056 kb on + strand, within Echvi_0753at 845.057 kb on - strand, within Echvi_0753at 845.057 kb on - strand, within Echvi_0753at 845.059 kb on + strand, within Echvi_0753at 845.060 kb on - strand, within Echvi_0753at 845.060 kb on - strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.061 kb on + strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.062 kb on - strand, within Echvi_0753at 845.092 kb on - strand, within Echvi_0753at 845.136 kb on + strandat 845.136 kb on + strandat 845.137 kb on - strandat 845.137 kb on - strandat 845.274 kb on + strandat 845.720 kb on - strand, within Echvi_0754at 845.782 kb on - strand, within Echvi_0754at 845.808 kb on + strand, within Echvi_0754at 845.808 kb on + strand, within Echvi_0754at 845.823 kb on + strand, within Echvi_0754at 845.851 kb on - strand, within Echvi_0754at 845.851 kb on - strand, within Echvi_0754at 845.948 kb on + strand, within Echvi_0754at 846.054 kb on - strand, within Echvi_0754at 846.132 kb on + strand, within Echvi_0754at 846.159 kb on + strand, within Echvi_0754at 846.160 kb on - strand, within Echvi_0754at 846.217 kb on + strand, within Echvi_0754at 846.218 kb on - strand, within Echvi_0754at 846.763 kb on + strand, within Echvi_0754at 846.776 kb on + strand, within Echvi_0754at 846.777 kb on - strand, within Echvi_0754at 846.845 kb on + strand, within Echvi_0754at 846.846 kb on - strand, within Echvi_0754at 846.849 kb on + strand, within Echvi_0754at 846.907 kb on + strand, within Echvi_0754at 846.907 kb on + strand, within Echvi_0754at 846.951 kb on - strand, within Echvi_0754at 846.959 kb on + strand, within Echvi_0754at 847.026 kb on + strand, within Echvi_0754at 847.026 kb on + strand, within Echvi_0754at 847.026 kb on + strand, within Echvi_0754at 847.098 kb on + strand, within Echvi_0754at 847.098 kb on + strand, within Echvi_0754at 847.099 kb on - strand, within Echvi_0754at 847.099 kb on - strand, within Echvi_0754at 847.142 kb on - strand, within Echvi_0754at 847.167 kb on - strand, within Echvi_0754at 847.222 kb on - strand, within Echvi_0754at 847.312 kb on - strand, within Echvi_0754at 847.443 kb on + strand, within Echvi_0754at 847.443 kb on + strand, within Echvi_0754at 847.443 kb on + strand, within Echvi_0754at 847.443 kb on + strand, within Echvi_0754at 847.443 kb on + strand, within Echvi_0754at 847.444 kb on - strand, within Echvi_0754at 847.449 kb on + strand, within Echvi_0754at 847.476 kb on + strand, within Echvi_0754at 847.489 kb on + strand, within Echvi_0754at 847.489 kb on + strand, within Echvi_0754at 847.490 kb on - strand, within Echvi_0754at 847.558 kb on - strand, within Echvi_0754at 847.558 kb on - strand, within Echvi_0754at 847.563 kb on + strand, within Echvi_0754at 847.673 kb on + strandat 847.674 kb on - strandat 847.674 kb on - strandat 847.800 kb on + strandat 847.808 kb on - strandat 847.826 kb on - strandat 847.870 kb on + strandat 847.871 kb on - strandat 847.893 kb on + strandat 847.915 kb on - strandat 848.087 kb on - strandat 848.191 kb on + strandat 848.191 kb on + strandat 848.191 kb on + strandat 848.191 kb on + strandat 848.196 kb on + strandat 848.196 kb on + strandat 848.196 kb on + strandat 848.250 kb on + strandat 848.250 kb on + strandat 848.257 kb on + strandat 848.282 kb on - strandat 848.316 kb on - strandat 848.340 kb on + strandat 848.406 kb on + strandat 848.406 kb on + strandat 848.407 kb on - strandat 848.436 kb on + strandat 848.444 kb on - strandat 848.488 kb on + strandat 848.489 kb on - strandat 848.539 kb on + strandat 848.559 kb on + strandat 848.599 kb on + strandat 848.600 kb on - strandat 848.600 kb on - strandat 848.600 kb on - strandat 848.644 kb on - strandat 848.722 kb on - strandat 848.752 kb on + strandat 848.759 kb on - strandat 848.762 kb on + strandat 848.765 kb on - strandat 848.765 kb on - strandat 848.778 kb on + strandat 848.778 kb on + strandat 848.778 kb on + strandat 848.824 kb on + strandat 848.824 kb on + strandat 848.854 kb on - strandat 848.882 kb on + strandat 848.887 kb on + strandat 848.888 kb on - strandat 848.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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844,311 - Echvi_0753 0.25 +0.1
844,321 + Echvi_0753 0.26 -0.3
844,321 + Echvi_0753 0.26 -0.4
844,321 + Echvi_0753 0.26 +0.5
844,321 + Echvi_0753 0.26 -0.1
844,321 + Echvi_0753 0.26 -0.3
844,322 - Echvi_0753 0.26 -0.5
844,416 + Echvi_0753 0.34 -0.5
844,416 + Echvi_0753 0.34 +0.0
844,417 - Echvi_0753 0.34 +0.3
844,427 + Echvi_0753 0.35 +1.0
844,521 + Echvi_0753 0.43 -0.4
844,521 + Echvi_0753 0.43 -0.5
844,546 + Echvi_0753 0.45 +0.2
844,546 + Echvi_0753 0.45 +0.6
844,546 + Echvi_0753 0.45 -0.3
844,546 + Echvi_0753 0.45 -0.7
844,546 + Echvi_0753 0.45 +0.3
844,547 - Echvi_0753 0.45 +0.1
844,547 - Echvi_0753 0.45 -0.1
844,547 - Echvi_0753 0.45 -1.1
844,547 - Echvi_0753 0.45 +0.5
844,553 - Echvi_0753 0.45 +0.6
844,660 - Echvi_0753 0.54 -1.0
844,662 + Echvi_0753 0.54 +0.4
844,663 - Echvi_0753 0.54 -0.6
844,722 - Echvi_0753 0.59 +1.0
844,725 + Echvi_0753 0.60 +2.5
844,732 + Echvi_0753 0.60 -0.3
844,733 - Echvi_0753 0.60 +0.8
844,877 + Echvi_0753 0.72 +0.7
845,033 - Echvi_0753 0.85 +1.0
845,033 - Echvi_0753 0.85 +1.9
845,056 + Echvi_0753 0.87 -0.6
845,057 - Echvi_0753 0.87 +1.0
845,057 - Echvi_0753 0.87 -0.6
845,059 + Echvi_0753 0.87 +0.3
845,060 - Echvi_0753 0.87 +0.7
845,060 - Echvi_0753 0.87 -0.4
845,061 + Echvi_0753 0.87 +0.8
845,061 + Echvi_0753 0.87 +0.3
845,061 + Echvi_0753 0.87 +2.1
845,061 + Echvi_0753 0.87 +0.8
845,061 + Echvi_0753 0.87 +0.8
845,061 + Echvi_0753 0.87 -0.7
845,062 - Echvi_0753 0.87 -0.6
845,062 - Echvi_0753 0.87 -0.4
845,062 - Echvi_0753 0.87 +0.3
845,062 - Echvi_0753 0.87 -0.6
845,062 - Echvi_0753 0.87 -0.7
845,062 - Echvi_0753 0.87 +0.4
845,092 - Echvi_0753 0.90 +1.6
845,136 + +0.2
845,136 + +1.5
845,137 - -0.6
845,137 - +1.0
845,274 + -0.2
845,720 - Echvi_0754 0.16 +1.3
845,782 - Echvi_0754 0.18 +0.2
845,808 + Echvi_0754 0.19 +0.9
845,808 + Echvi_0754 0.19 +1.0
845,823 + Echvi_0754 0.20 -0.9
845,851 - Echvi_0754 0.21 +0.0
845,851 - Echvi_0754 0.21 -0.9
845,948 + Echvi_0754 0.25 -0.5
846,054 - Echvi_0754 0.29 +0.6
846,132 + Echvi_0754 0.32 +0.0
846,159 + Echvi_0754 0.33 -0.1
846,160 - Echvi_0754 0.33 +1.9
846,217 + Echvi_0754 0.35 +1.4
846,218 - Echvi_0754 0.35 +0.9
846,763 + Echvi_0754 0.56 -0.1
846,776 + Echvi_0754 0.57 +1.9
846,777 - Echvi_0754 0.57 -0.8
846,845 + Echvi_0754 0.59 +0.7
846,846 - Echvi_0754 0.59 -2.1
846,849 + Echvi_0754 0.59 +1.3
846,907 + Echvi_0754 0.62 -0.1
846,907 + Echvi_0754 0.62 +0.2
846,951 - Echvi_0754 0.63 +0.8
846,959 + Echvi_0754 0.64 +0.8
847,026 + Echvi_0754 0.66 -0.0
847,026 + Echvi_0754 0.66 +1.3
847,026 + Echvi_0754 0.66 -0.4
847,098 + Echvi_0754 0.69 +0.6
847,098 + Echvi_0754 0.69 +0.0
847,099 - Echvi_0754 0.69 +0.8
847,099 - Echvi_0754 0.69 +1.0
847,142 - Echvi_0754 0.71 +0.0
847,167 - Echvi_0754 0.71 +2.6
847,222 - Echvi_0754 0.74 -0.7
847,312 - Echvi_0754 0.77 -0.4
847,443 + Echvi_0754 0.82 +1.0
847,443 + Echvi_0754 0.82 -0.1
847,443 + Echvi_0754 0.82 -1.8
847,443 + Echvi_0754 0.82 -0.4
847,443 + Echvi_0754 0.82 -0.3
847,444 - Echvi_0754 0.82 +1.9
847,449 + Echvi_0754 0.82 -0.5
847,476 + Echvi_0754 0.83 -1.1
847,489 + Echvi_0754 0.84 +1.8
847,489 + Echvi_0754 0.84 +0.5
847,490 - Echvi_0754 0.84 -0.9
847,558 - Echvi_0754 0.86 -0.8
847,558 - Echvi_0754 0.86 -0.1
847,563 + Echvi_0754 0.87 +0.0
847,673 + +0.1
847,674 - +0.4
847,674 - -0.6
847,800 + +0.3
847,808 - -0.2
847,826 - +0.1
847,870 + +0.7
847,871 - +0.8
847,893 + -2.1
847,915 - -2.2
848,087 - +0.0
848,191 + +0.9
848,191 + +0.7
848,191 + +0.1
848,191 + -0.5
848,196 + -0.7
848,196 + +0.1
848,196 + -0.2
848,250 + +0.5
848,250 + -0.2
848,257 + +0.3
848,282 - +1.1
848,316 - -0.1
848,340 + +0.2
848,406 + -0.3
848,406 + -1.1
848,407 - -0.8
848,436 + -0.0
848,444 - +0.1
848,488 + -1.3
848,489 - -0.3
848,539 + +0.8
848,559 + +0.2
848,599 + +0.1
848,600 - -1.3
848,600 - +0.4
848,600 - -0.5
848,644 - -0.2
848,722 - +0.3
848,752 + -0.1
848,759 - -1.0
848,762 + -0.6
848,765 - +1.0
848,765 - -0.7
848,778 + +1.0
848,778 + -0.4
848,778 + -0.5
848,824 + +0.1
848,824 + -0.7
848,854 - +0.4
848,882 + -0.2
848,887 + -1.2
848,888 - +0.3
848,900 + -0.8

Or see this region's nucleotide sequence