Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0724 and Echvi_0725 overlap by 4 nucleotides Echvi_0725 and Echvi_0726 overlap by 4 nucleotides Echvi_0726 and Echvi_0727 are separated by 11 nucleotides Echvi_0727 and Echvi_0728 overlap by 6 nucleotides Echvi_0728 and Echvi_0729 are separated by 354 nucleotides Echvi_0729 and Echvi_0730 are separated by 101 nucleotides
Echvi_0724: Echvi_0724 - hypothetical protein, at 814,765 to 815,304
_0724
Echvi_0725: Echvi_0725 - hypothetical protein, at 815,301 to 815,741
_0725
Echvi_0726: Echvi_0726 - RNA polymerase sigma factor, sigma-70 family, at 815,738 to 816,226
_0726
Echvi_0727: Echvi_0727 - hypothetical protein, at 816,238 to 816,489
_0727
Echvi_0728: Echvi_0728 - hypothetical protein, at 816,484 to 816,762
_0728
Echvi_0729: Echvi_0729 - tRNA, at 817,117 to 817,192
_0729
Echvi_0730: Echvi_0730 - hypothetical protein, at 817,294 to 818,628
_0730
Position (kb) 816
817 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 815.285 kb on - strand at 815.333 kb on + strand at 815.334 kb on - strand at 815.406 kb on - strand, within Echvi_0725 at 815.701 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.704 kb on + strand at 815.705 kb on - strand at 815.792 kb on - strand, within Echvi_0726 at 815.824 kb on + strand, within Echvi_0726 at 815.825 kb on - strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.826 kb on + strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.827 kb on - strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.914 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 815.990 kb on + strand, within Echvi_0726 at 816.166 kb on - strand, within Echvi_0726 at 816.202 kb on + strand at 816.202 kb on + strand at 816.203 kb on - strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.204 kb on + strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.205 kb on - strand at 816.229 kb on - strand at 816.233 kb on - strand at 816.236 kb on + strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.237 kb on - strand at 816.246 kb on - strand at 816.250 kb on - strand at 816.253 kb on - strand at 816.276 kb on + strand, within Echvi_0727 at 816.532 kb on + strand, within Echvi_0728 at 816.571 kb on + strand, within Echvi_0728 at 816.649 kb on + strand, within Echvi_0728 at 816.836 kb on - strand at 816.836 kb on - strand at 817.033 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 815,285 - -0.4 815,333 + -0.1 815,334 - -0.7 815,406 - Echvi_0725 0.24 -0.4 815,701 + -0.0 815,704 + +0.9 815,704 + +0.2 815,704 + +1.0 815,705 - +1.9 815,792 - Echvi_0726 0.11 +1.7 815,824 + Echvi_0726 0.18 +0.2 815,825 - Echvi_0726 0.18 +0.7 815,826 + Echvi_0726 0.18 +1.0 815,826 + Echvi_0726 0.18 -0.7 815,827 - Echvi_0726 0.18 -0.2 815,827 - Echvi_0726 0.18 +1.9 815,827 - Echvi_0726 0.18 +0.5 815,827 - Echvi_0726 0.18 -0.1 815,914 + Echvi_0726 0.36 -0.8 815,914 + Echvi_0726 0.36 -1.8 815,914 + Echvi_0726 0.36 -0.8 815,914 + Echvi_0726 0.36 -0.7 815,990 + Echvi_0726 0.52 +0.7 815,990 + Echvi_0726 0.52 -0.9 815,990 + Echvi_0726 0.52 +0.0 816,166 - Echvi_0726 0.88 -0.6 816,202 + -1.1 816,202 + +0.6 816,203 - -2.0 816,204 + -2.2 816,204 + +0.5 816,204 + +1.2 816,204 + -0.3 816,204 + -0.1 816,205 - -1.6 816,205 - +0.9 816,205 - +0.3 816,205 - -0.8 816,205 - -1.0 816,205 - +3.2 816,205 - -0.4 816,229 - +0.5 816,233 - +0.9 816,236 + +0.7 816,237 - -1.0 816,237 - -1.8 816,237 - +0.4 816,246 - -1.1 816,250 - +1.2 816,253 - -1.2 816,276 + Echvi_0727 0.15 -1.6 816,532 + Echvi_0728 0.17 +3.9 816,571 + Echvi_0728 0.31 -0.9 816,649 + Echvi_0728 0.59 +0.1 816,836 - +0.3 816,836 - -0.1 817,033 + -0.9
Or see this region's nucleotide sequence