Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0626

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0624 and Echvi_0625 are separated by 79 nucleotidesEchvi_0625 and Echvi_0626 are separated by 42 nucleotidesEchvi_0626 and Echvi_0627 are separated by 43 nucleotides Echvi_0624: Echvi_0624 - Bacteroidetes-specific putative membrane protein, at 701,747 to 702,724 _0624 Echvi_0625: Echvi_0625 - Uroporphyrinogen-III synthase, at 702,804 to 703,577 _0625 Echvi_0626: Echvi_0626 - hypothetical protein, at 703,620 to 704,687 _0626 Echvi_0627: Echvi_0627 - hypothetical protein, at 704,731 to 706,461 _0627 Position (kb) 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3at 702.681 kb on - strandat 702.697 kb on + strandat 702.737 kb on + strandat 702.737 kb on + strandat 702.750 kb on + strandat 702.751 kb on - strandat 702.756 kb on + strandat 702.761 kb on + strandat 702.769 kb on + strandat 702.770 kb on - strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.788 kb on + strandat 702.789 kb on - strandat 702.812 kb on + strandat 703.577 kb on + strandat 703.577 kb on + strandat 703.578 kb on - strandat 703.578 kb on - strandat 703.578 kb on - strandat 703.578 kb on - strandat 703.701 kb on - strandat 703.722 kb on + strandat 703.722 kb on + strandat 703.727 kb on - strand, within Echvi_0626at 703.740 kb on + strand, within Echvi_0626at 703.741 kb on - strand, within Echvi_0626at 703.780 kb on + strand, within Echvi_0626at 703.840 kb on + strand, within Echvi_0626at 703.872 kb on + strand, within Echvi_0626at 703.915 kb on + strand, within Echvi_0626at 703.951 kb on - strand, within Echvi_0626at 703.951 kb on - strand, within Echvi_0626at 703.967 kb on + strand, within Echvi_0626at 703.992 kb on + strand, within Echvi_0626at 703.992 kb on + strand, within Echvi_0626at 703.998 kb on + strand, within Echvi_0626at 704.037 kb on + strand, within Echvi_0626at 704.037 kb on + strand, within Echvi_0626at 704.037 kb on + strand, within Echvi_0626at 704.038 kb on - strand, within Echvi_0626at 704.090 kb on + strand, within Echvi_0626at 704.091 kb on - strand, within Echvi_0626at 704.091 kb on - strand, within Echvi_0626at 704.213 kb on - strand, within Echvi_0626at 704.213 kb on - strand, within Echvi_0626at 704.244 kb on + strand, within Echvi_0626at 704.361 kb on - strand, within Echvi_0626at 704.395 kb on + strand, within Echvi_0626at 704.395 kb on + strand, within Echvi_0626at 704.396 kb on - strand, within Echvi_0626at 704.443 kb on - strand, within Echvi_0626at 704.443 kb on - strand, within Echvi_0626at 704.462 kb on + strand, within Echvi_0626at 704.462 kb on + strand, within Echvi_0626at 704.463 kb on - strand, within Echvi_0626at 704.485 kb on + strand, within Echvi_0626at 704.485 kb on + strand, within Echvi_0626at 704.485 kb on + strand, within Echvi_0626at 704.486 kb on - strand, within Echvi_0626at 704.486 kb on - strand, within Echvi_0626at 704.612 kb on - strandat 704.641 kb on + strandat 704.642 kb on - strandat 704.642 kb on - strandat 704.688 kb on - strandat 704.697 kb on + strandat 704.697 kb on + strandat 704.718 kb on - strandat 704.726 kb on + strandat 704.745 kb on + strandat 704.746 kb on - strandat 704.747 kb on + strandat 704.748 kb on - strandat 704.748 kb on - strandat 704.768 kb on + strandat 704.769 kb on - strandat 704.772 kb on + strandat 704.773 kb on - strandat 704.779 kb on + strandat 704.960 kb on + strand, within Echvi_0627at 704.984 kb on + strand, within Echvi_0627at 704.984 kb on + strand, within Echvi_0627at 704.985 kb on - strand, within Echvi_0627at 705.027 kb on + strand, within Echvi_0627at 705.027 kb on + strand, within Echvi_0627at 705.054 kb on - strand, within Echvi_0627at 705.054 kb on - strand, within Echvi_0627at 705.140 kb on + strand, within Echvi_0627at 705.173 kb on - strand, within Echvi_0627at 705.219 kb on + strand, within Echvi_0627at 705.219 kb on + strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.220 kb on - strand, within Echvi_0627at 705.222 kb on + strand, within Echvi_0627at 705.223 kb on - strand, within Echvi_0627at 705.223 kb on - strand, within Echvi_0627at 705.223 kb on - strand, within Echvi_0627at 705.224 kb on + strand, within Echvi_0627at 705.309 kb on - strand, within Echvi_0627at 705.327 kb on - strand, within Echvi_0627at 705.330 kb on + strand, within Echvi_0627at 705.330 kb on + strand, within Echvi_0627at 705.330 kb on + strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.331 kb on - strand, within Echvi_0627at 705.349 kb on + strand, within Echvi_0627at 705.431 kb on + strand, within Echvi_0627at 705.432 kb on - strand, within Echvi_0627at 705.477 kb on + strand, within Echvi_0627at 705.529 kb on + strand, within Echvi_0627at 705.530 kb on - strand, within Echvi_0627at 705.530 kb on - strand, within Echvi_0627at 705.565 kb on + strand, within Echvi_0627at 705.584 kb on + strand, within Echvi_0627at 705.585 kb on - strand, within Echvi_0627at 705.614 kb on + strand, within Echvi_0627at 705.615 kb on - strand, within Echvi_0627at 705.641 kb on + strand, within Echvi_0627at 705.641 kb on + strand, within Echvi_0627at 705.642 kb on - strand, within Echvi_0627at 705.678 kb on + strand, within Echvi_0627

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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702,681 - +1.9
702,697 + +0.9
702,737 + -0.3
702,737 + +0.5
702,750 + +0.0
702,751 - -0.9
702,756 + +1.3
702,761 + +0.4
702,769 + -0.3
702,770 - -0.6
702,788 + -0.5
702,788 + -0.3
702,788 + +0.4
702,788 + +1.2
702,788 + +0.5
702,788 + -1.7
702,788 + +0.6
702,789 - +0.2
702,812 + -0.5
703,577 + -0.3
703,577 + -0.5
703,578 - +0.6
703,578 - -0.5
703,578 - -0.3
703,578 - +1.3
703,701 - +0.3
703,722 + -2.1
703,722 + -0.3
703,727 - Echvi_0626 0.10 -1.4
703,740 + Echvi_0626 0.11 -1.9
703,741 - Echvi_0626 0.11 -0.7
703,780 + Echvi_0626 0.15 -0.1
703,840 + Echvi_0626 0.21 -0.1
703,872 + Echvi_0626 0.24 +0.0
703,915 + Echvi_0626 0.28 -1.1
703,951 - Echvi_0626 0.31 -1.1
703,951 - Echvi_0626 0.31 -0.4
703,967 + Echvi_0626 0.32 -1.9
703,992 + Echvi_0626 0.35 -0.2
703,992 + Echvi_0626 0.35 -1.0
703,998 + Echvi_0626 0.35 +0.5
704,037 + Echvi_0626 0.39 -0.3
704,037 + Echvi_0626 0.39 -0.6
704,037 + Echvi_0626 0.39 -0.6
704,038 - Echvi_0626 0.39 +0.3
704,090 + Echvi_0626 0.44 +0.3
704,091 - Echvi_0626 0.44 -0.9
704,091 - Echvi_0626 0.44 -0.8
704,213 - Echvi_0626 0.56 -0.1
704,213 - Echvi_0626 0.56 +0.9
704,244 + Echvi_0626 0.58 -0.1
704,361 - Echvi_0626 0.69 +1.3
704,395 + Echvi_0626 0.73 -0.3
704,395 + Echvi_0626 0.73 +1.2
704,396 - Echvi_0626 0.73 -1.0
704,443 - Echvi_0626 0.77 -0.7
704,443 - Echvi_0626 0.77 -2.0
704,462 + Echvi_0626 0.79 +0.5
704,462 + Echvi_0626 0.79 -1.5
704,463 - Echvi_0626 0.79 -1.2
704,485 + Echvi_0626 0.81 -0.5
704,485 + Echvi_0626 0.81 -0.6
704,485 + Echvi_0626 0.81 -0.7
704,486 - Echvi_0626 0.81 -1.4
704,486 - Echvi_0626 0.81 +0.4
704,612 - +0.1
704,641 + -2.0
704,642 - -1.1
704,642 - -0.6
704,688 - -1.7
704,697 + +1.9
704,697 + +3.2
704,718 - -0.5
704,726 + -0.3
704,745 + -0.0
704,746 - -0.9
704,747 + -0.0
704,748 - +0.3
704,748 - -0.8
704,768 + +0.0
704,769 - -0.5
704,772 + -0.6
704,773 - +0.9
704,779 + +0.6
704,960 + Echvi_0627 0.13 -1.0
704,984 + Echvi_0627 0.15 -0.4
704,984 + Echvi_0627 0.15 -2.0
704,985 - Echvi_0627 0.15 +0.2
705,027 + Echvi_0627 0.17 -0.5
705,027 + Echvi_0627 0.17 -2.0
705,054 - Echvi_0627 0.19 +0.5
705,054 - Echvi_0627 0.19 +0.0
705,140 + Echvi_0627 0.24 +0.0
705,173 - Echvi_0627 0.26 +0.6
705,219 + Echvi_0627 0.28 -0.9
705,219 + Echvi_0627 0.28 +0.1
705,220 - Echvi_0627 0.28 -0.3
705,220 - Echvi_0627 0.28 -1.6
705,220 - Echvi_0627 0.28 -0.7
705,220 - Echvi_0627 0.28 -0.8
705,222 + Echvi_0627 0.28 -0.9
705,223 - Echvi_0627 0.28 -0.5
705,223 - Echvi_0627 0.28 -0.7
705,223 - Echvi_0627 0.28 -1.3
705,224 + Echvi_0627 0.28 -0.9
705,309 - Echvi_0627 0.33 -1.2
705,327 - Echvi_0627 0.34 +0.9
705,330 + Echvi_0627 0.35 -0.7
705,330 + Echvi_0627 0.35 +2.2
705,330 + Echvi_0627 0.35 -0.5
705,331 - Echvi_0627 0.35 -0.7
705,331 - Echvi_0627 0.35 -0.7
705,331 - Echvi_0627 0.35 +1.2
705,331 - Echvi_0627 0.35 -0.0
705,331 - Echvi_0627 0.35 -0.5
705,349 + Echvi_0627 0.36 +0.3
705,431 + Echvi_0627 0.40 +0.7
705,432 - Echvi_0627 0.40 -1.2
705,477 + Echvi_0627 0.43 -0.9
705,529 + Echvi_0627 0.46 +3.7
705,530 - Echvi_0627 0.46 -0.4
705,530 - Echvi_0627 0.46 +0.0
705,565 + Echvi_0627 0.48 +0.1
705,584 + Echvi_0627 0.49 -0.5
705,585 - Echvi_0627 0.49 -0.7
705,614 + Echvi_0627 0.51 +0.1
705,615 - Echvi_0627 0.51 -1.1
705,641 + Echvi_0627 0.53 +0.5
705,641 + Echvi_0627 0.53 +1.2
705,642 - Echvi_0627 0.53 -0.3
705,678 + Echvi_0627 0.55 +0.3

Or see this region's nucleotide sequence