Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0539

Experiment: m.b. A22 0.04 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0537 and Echvi_0538 are separated by 116 nucleotidesEchvi_0538 and Echvi_0539 overlap by 53 nucleotidesEchvi_0539 and Echvi_0540 are separated by 219 nucleotides Echvi_0537: Echvi_0537 - hypothetical protein, at 599,433 to 600,113 _0537 Echvi_0538: Echvi_0538 - hypothetical protein, at 600,230 to 601,024 _0538 Echvi_0539: Echvi_0539 - Protein of unknown function (DUF3037)., at 600,972 to 601,379 _0539 Echvi_0540: Echvi_0540 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 601,599 to 603,032 _0540 Position (kb) 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 599.978 kb on - strand, within Echvi_0537at 599.978 kb on - strand, within Echvi_0537at 599.978 kb on - strand, within Echvi_0537at 599.985 kb on - strand, within Echvi_0537at 599.987 kb on + strand, within Echvi_0537at 600.032 kb on + strand, within Echvi_0537at 600.032 kb on + strand, within Echvi_0537at 600.032 kb on + strand, within Echvi_0537at 600.032 kb on + strand, within Echvi_0537at 600.033 kb on - strand, within Echvi_0537at 600.033 kb on - strand, within Echvi_0537at 600.033 kb on - strand, within Echvi_0537at 600.075 kb on - strandat 600.135 kb on - strandat 600.135 kb on - strandat 600.135 kb on - strandat 600.135 kb on - strandat 600.136 kb on + strandat 600.136 kb on + strandat 600.136 kb on + strandat 600.136 kb on + strandat 600.137 kb on - strandat 600.137 kb on - strandat 600.137 kb on - strandat 600.156 kb on - strandat 600.156 kb on - strandat 600.164 kb on - strandat 600.164 kb on - strandat 600.180 kb on + strandat 600.181 kb on - strandat 600.183 kb on - strandat 600.183 kb on - strandat 600.183 kb on - strandat 600.183 kb on - strandat 600.191 kb on + strandat 600.221 kb on - strandat 600.227 kb on + strandat 600.334 kb on + strandat 600.335 kb on - strand, within Echvi_0538at 600.335 kb on - strand, within Echvi_0538at 600.339 kb on - strand, within Echvi_0538at 600.339 kb on - strand, within Echvi_0538at 600.339 kb on - strand, within Echvi_0538at 600.445 kb on - strand, within Echvi_0538at 600.507 kb on + strand, within Echvi_0538at 600.508 kb on - strand, within Echvi_0538at 600.585 kb on + strand, within Echvi_0538at 600.586 kb on - strand, within Echvi_0538at 600.586 kb on - strand, within Echvi_0538at 600.586 kb on - strand, within Echvi_0538at 600.586 kb on - strand, within Echvi_0538at 600.586 kb on - strand, within Echvi_0538at 600.664 kb on + strand, within Echvi_0538at 600.942 kb on - strand, within Echvi_0538at 600.942 kb on - strand, within Echvi_0538at 600.960 kb on + strandat 600.960 kb on + strandat 601.019 kb on - strandat 601.020 kb on + strandat 601.020 kb on + strandat 601.021 kb on - strandat 601.027 kb on - strand, within Echvi_0539at 601.079 kb on - strand, within Echvi_0539at 601.079 kb on - strand, within Echvi_0539at 601.114 kb on + strand, within Echvi_0539at 601.151 kb on - strand, within Echvi_0539at 601.156 kb on + strand, within Echvi_0539at 601.157 kb on - strand, within Echvi_0539at 601.175 kb on - strand, within Echvi_0539at 601.175 kb on - strand, within Echvi_0539at 601.241 kb on + strand, within Echvi_0539at 601.241 kb on + strand, within Echvi_0539at 601.245 kb on - strand, within Echvi_0539at 601.332 kb on - strand, within Echvi_0539at 601.372 kb on + strandat 601.372 kb on + strandat 601.373 kb on - strandat 601.377 kb on + strandat 601.377 kb on + strandat 601.377 kb on + strandat 601.377 kb on + strandat 601.378 kb on - strandat 601.378 kb on - strandat 601.378 kb on - strandat 601.378 kb on - strandat 601.459 kb on + strandat 601.460 kb on - strandat 601.460 kb on - strandat 601.460 kb on - strandat 601.469 kb on + strandat 601.469 kb on + strandat 601.469 kb on + strandat 601.581 kb on + strandat 601.601 kb on - strandat 601.627 kb on + strandat 601.627 kb on + strandat 601.627 kb on + strandat 601.627 kb on + strandat 601.627 kb on + strandat 601.628 kb on - strandat 601.632 kb on - strandat 601.721 kb on + strandat 601.722 kb on - strandat 601.722 kb on - strandat 601.764 kb on - strand, within Echvi_0540at 601.807 kb on + strand, within Echvi_0540at 601.859 kb on - strand, within Echvi_0540at 601.859 kb on - strand, within Echvi_0540at 601.889 kb on - strand, within Echvi_0540at 601.947 kb on - strand, within Echvi_0540at 601.984 kb on + strand, within Echvi_0540at 601.984 kb on + strand, within Echvi_0540at 601.986 kb on + strand, within Echvi_0540at 601.986 kb on + strand, within Echvi_0540at 601.986 kb on + strand, within Echvi_0540at 601.987 kb on - strand, within Echvi_0540at 601.987 kb on - strand, within Echvi_0540at 602.015 kb on - strand, within Echvi_0540at 602.024 kb on + strand, within Echvi_0540at 602.201 kb on + strand, within Echvi_0540at 602.261 kb on + strand, within Echvi_0540at 602.262 kb on - strand, within Echvi_0540at 602.296 kb on + strand, within Echvi_0540at 602.319 kb on + strand, within Echvi_0540at 602.319 kb on + strand, within Echvi_0540at 602.319 kb on + strand, within Echvi_0540at 602.320 kb on - strand, within Echvi_0540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
remove
599,978 - Echvi_0537 0.80 -1.1
599,978 - Echvi_0537 0.80 +0.6
599,978 - Echvi_0537 0.80 -0.3
599,985 - Echvi_0537 0.81 +0.5
599,987 + Echvi_0537 0.81 +0.4
600,032 + Echvi_0537 0.88 +1.9
600,032 + Echvi_0537 0.88 +0.2
600,032 + Echvi_0537 0.88 +0.1
600,032 + Echvi_0537 0.88 -0.9
600,033 - Echvi_0537 0.88 +0.5
600,033 - Echvi_0537 0.88 +1.5
600,033 - Echvi_0537 0.88 -1.1
600,075 - +0.3
600,135 - -0.4
600,135 - -0.4
600,135 - +0.6
600,135 - +0.9
600,136 + -2.6
600,136 + +0.2
600,136 + +2.9
600,136 + -0.2
600,137 - +1.3
600,137 - +0.4
600,137 - +0.9
600,156 - +0.1
600,156 - +1.1
600,164 - -1.6
600,164 - +0.0
600,180 + +0.6
600,181 - -1.0
600,183 - -0.7
600,183 - +2.4
600,183 - -0.1
600,183 - +0.0
600,191 + +1.4
600,221 - -1.8
600,227 + +0.5
600,334 + +1.9
600,335 - Echvi_0538 0.13 -0.3
600,335 - Echvi_0538 0.13 -0.9
600,339 - Echvi_0538 0.14 -1.3
600,339 - Echvi_0538 0.14 -0.0
600,339 - Echvi_0538 0.14 +0.0
600,445 - Echvi_0538 0.27 -0.5
600,507 + Echvi_0538 0.35 -0.1
600,508 - Echvi_0538 0.35 -0.1
600,585 + Echvi_0538 0.45 +0.7
600,586 - Echvi_0538 0.45 -0.1
600,586 - Echvi_0538 0.45 +0.9
600,586 - Echvi_0538 0.45 -0.7
600,586 - Echvi_0538 0.45 -2.5
600,586 - Echvi_0538 0.45 -0.9
600,664 + Echvi_0538 0.55 +1.3
600,942 - Echvi_0538 0.90 +0.5
600,942 - Echvi_0538 0.90 -0.2
600,960 + -0.6
600,960 + -0.5
601,019 - +0.5
601,020 + -1.0
601,020 + -0.7
601,021 - +0.4
601,027 - Echvi_0539 0.13 -0.0
601,079 - Echvi_0539 0.26 -0.7
601,079 - Echvi_0539 0.26 +0.5
601,114 + Echvi_0539 0.35 +0.9
601,151 - Echvi_0539 0.44 +0.9
601,156 + Echvi_0539 0.45 +0.9
601,157 - Echvi_0539 0.45 -0.1
601,175 - Echvi_0539 0.50 -1.2
601,175 - Echvi_0539 0.50 +0.4
601,241 + Echvi_0539 0.66 +0.3
601,241 + Echvi_0539 0.66 -2.1
601,245 - Echvi_0539 0.67 -2.5
601,332 - Echvi_0539 0.88 -0.1
601,372 + -0.9
601,372 + -1.1
601,373 - -1.8
601,377 + +0.0
601,377 + +0.4
601,377 + -0.7
601,377 + -0.2
601,378 - +0.0
601,378 - -0.1
601,378 - -1.5
601,378 - +0.1
601,459 + +0.1
601,460 - -1.1
601,460 - +0.4
601,460 - +0.9
601,469 + -1.4
601,469 + -0.1
601,469 + -0.5
601,581 + -0.7
601,601 - +0.2
601,627 + +1.3
601,627 + +0.2
601,627 + -0.5
601,627 + -0.4
601,627 + -0.6
601,628 - -1.8
601,632 - +0.1
601,721 + -1.0
601,722 - +0.4
601,722 - +2.9
601,764 - Echvi_0540 0.12 -1.0
601,807 + Echvi_0540 0.15 -0.6
601,859 - Echvi_0540 0.18 -1.3
601,859 - Echvi_0540 0.18 +0.7
601,889 - Echvi_0540 0.20 +0.4
601,947 - Echvi_0540 0.24 -3.5
601,984 + Echvi_0540 0.27 -0.7
601,984 + Echvi_0540 0.27 +0.6
601,986 + Echvi_0540 0.27 +0.8
601,986 + Echvi_0540 0.27 +0.2
601,986 + Echvi_0540 0.27 -0.6
601,987 - Echvi_0540 0.27 -1.8
601,987 - Echvi_0540 0.27 -0.7
602,015 - Echvi_0540 0.29 +0.4
602,024 + Echvi_0540 0.30 -1.1
602,201 + Echvi_0540 0.42 -0.8
602,261 + Echvi_0540 0.46 +0.7
602,262 - Echvi_0540 0.46 +1.0
602,296 + Echvi_0540 0.49 -0.7
602,319 + Echvi_0540 0.50 -1.0
602,319 + Echvi_0540 0.50 +0.4
602,319 + Echvi_0540 0.50 +1.9
602,320 - Echvi_0540 0.50 -0.5

Or see this region's nucleotide sequence