Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0489

Experiment: m.b. A22 0.04 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0488 and Echvi_0489 are separated by 225 nucleotidesEchvi_0489 and Echvi_0490 are separated by 184 nucleotides Echvi_0488: Echvi_0488 - hypothetical protein, at 540,289 to 541,599 _0488 Echvi_0489: Echvi_0489 - Uncharacterized protein conserved in bacteria, at 541,825 to 543,066 _0489 Echvi_0490: Echvi_0490 - Beta-glucanase/Beta-glucan synthetase, at 543,251 to 544,132 _0490 Position (kb) 541 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2at 540.839 kb on + strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.924 kb on - strand, within Echvi_0488at 540.971 kb on - strand, within Echvi_0488at 540.986 kb on + strand, within Echvi_0488at 541.058 kb on + strand, within Echvi_0488at 541.219 kb on - strand, within Echvi_0488at 541.406 kb on + strand, within Echvi_0488at 541.406 kb on + strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.407 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.410 kb on - strand, within Echvi_0488at 541.431 kb on + strand, within Echvi_0488at 541.479 kb on + strandat 541.480 kb on - strandat 541.599 kb on + strandat 541.600 kb on - strandat 541.600 kb on - strandat 541.603 kb on - strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.607 kb on + strandat 541.608 kb on - strandat 541.626 kb on - strandat 541.656 kb on - strandat 541.687 kb on + strandat 541.696 kb on + strandat 541.696 kb on + strandat 541.839 kb on + strandat 541.930 kb on + strandat 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.979 kb on + strand, within Echvi_0489at 541.980 kb on - strand, within Echvi_0489at 541.980 kb on - strand, within Echvi_0489at 542.111 kb on - strand, within Echvi_0489at 542.205 kb on + strand, within Echvi_0489at 542.206 kb on - strand, within Echvi_0489at 542.243 kb on + strand, within Echvi_0489at 542.357 kb on + strand, within Echvi_0489at 542.387 kb on + strand, within Echvi_0489at 542.388 kb on - strand, within Echvi_0489at 542.449 kb on - strand, within Echvi_0489at 542.486 kb on - strand, within Echvi_0489at 542.673 kb on + strand, within Echvi_0489at 542.732 kb on + strand, within Echvi_0489at 542.732 kb on + strand, within Echvi_0489at 542.733 kb on - strand, within Echvi_0489at 542.870 kb on - strand, within Echvi_0489at 542.938 kb on + strand, within Echvi_0489at 542.938 kb on + strand, within Echvi_0489at 542.938 kb on + strand, within Echvi_0489at 542.939 kb on - strand, within Echvi_0489at 542.939 kb on - strand, within Echvi_0489at 542.939 kb on - strand, within Echvi_0489at 542.944 kb on + strandat 542.948 kb on + strandat 542.949 kb on - strandat 542.974 kb on + strandat 543.019 kb on + strandat 543.020 kb on - strandat 543.057 kb on + strandat 543.057 kb on + strandat 543.098 kb on - strandat 543.191 kb on + strandat 543.230 kb on + strandat 543.230 kb on + strandat 543.230 kb on + strandat 543.265 kb on - strandat 543.266 kb on + strandat 543.266 kb on + strandat 543.266 kb on + strandat 543.267 kb on - strandat 543.273 kb on - strandat 543.277 kb on - strandat 543.288 kb on + strandat 543.288 kb on + strandat 543.288 kb on + strandat 543.307 kb on + strandat 543.307 kb on + strandat 543.355 kb on + strand, within Echvi_0490at 543.355 kb on + strand, within Echvi_0490at 543.479 kb on + strand, within Echvi_0490at 543.637 kb on + strand, within Echvi_0490at 543.637 kb on + strand, within Echvi_0490at 543.638 kb on - strand, within Echvi_0490at 543.641 kb on + strand, within Echvi_0490at 543.642 kb on - strand, within Echvi_0490at 543.642 kb on - strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.789 kb on + strand, within Echvi_0490at 543.789 kb on + strand, within Echvi_0490at 543.916 kb on - strand, within Echvi_0490at 543.916 kb on - strand, within Echvi_0490at 543.918 kb on + strand, within Echvi_0490at 543.919 kb on - strand, within Echvi_0490at 544.015 kb on + strand, within Echvi_0490at 544.015 kb on + strand, within Echvi_0490at 544.016 kb on - strand, within Echvi_0490at 544.031 kb on - strand, within Echvi_0490at 544.050 kb on - strandat 544.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml
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540,839 + Echvi_0488 0.42 +0.5
540,924 - Echvi_0488 0.48 -0.6
540,924 - Echvi_0488 0.48 +0.8
540,924 - Echvi_0488 0.48 -0.3
540,971 - Echvi_0488 0.52 +0.1
540,986 + Echvi_0488 0.53 -1.6
541,058 + Echvi_0488 0.59 -1.8
541,219 - Echvi_0488 0.71 -1.6
541,406 + Echvi_0488 0.85 -1.4
541,406 + Echvi_0488 0.85 -0.4
541,407 - Echvi_0488 0.85 -0.2
541,407 - Echvi_0488 0.85 +0.6
541,407 - Echvi_0488 0.85 -0.1
541,410 - Echvi_0488 0.86 +0.4
541,410 - Echvi_0488 0.86 -0.6
541,410 - Echvi_0488 0.86 +0.3
541,431 + Echvi_0488 0.87 +0.3
541,479 + -0.8
541,480 - +0.1
541,599 + +0.6
541,600 - -0.4
541,600 - +0.6
541,603 - -0.6
541,607 + -0.2
541,607 + -0.1
541,607 + +0.2
541,607 + -0.2
541,607 + +0.1
541,608 - -1.5
541,626 - +0.0
541,656 - +0.3
541,687 + +1.3
541,696 + -0.2
541,696 + +1.7
541,839 + +0.6
541,930 + -0.1
541,979 + Echvi_0489 0.12 -0.2
541,979 + Echvi_0489 0.12 +2.6
541,979 + Echvi_0489 0.12 -0.3
541,979 + Echvi_0489 0.12 +0.7
541,980 - Echvi_0489 0.12 -0.6
541,980 - Echvi_0489 0.12 -0.4
542,111 - Echvi_0489 0.23 +0.3
542,205 + Echvi_0489 0.31 +0.3
542,206 - Echvi_0489 0.31 +0.7
542,243 + Echvi_0489 0.34 +0.3
542,357 + Echvi_0489 0.43 +0.5
542,387 + Echvi_0489 0.45 +0.2
542,388 - Echvi_0489 0.45 +1.3
542,449 - Echvi_0489 0.50 +0.3
542,486 - Echvi_0489 0.53 +0.6
542,673 + Echvi_0489 0.68 -1.3
542,732 + Echvi_0489 0.73 +1.0
542,732 + Echvi_0489 0.73 -1.6
542,733 - Echvi_0489 0.73 +0.4
542,870 - Echvi_0489 0.84 +1.5
542,938 + Echvi_0489 0.90 -0.7
542,938 + Echvi_0489 0.90 +0.3
542,938 + Echvi_0489 0.90 +0.9
542,939 - Echvi_0489 0.90 -0.4
542,939 - Echvi_0489 0.90 +0.4
542,939 - Echvi_0489 0.90 +0.8
542,944 + -0.2
542,948 + +0.5
542,949 - +1.1
542,974 + -1.3
543,019 + -1.6
543,020 - +0.4
543,057 + -1.0
543,057 + -0.2
543,098 - -1.3
543,191 + +0.0
543,230 + +0.8
543,230 + +0.1
543,230 + -0.7
543,265 - -0.5
543,266 + +0.7
543,266 + +0.3
543,266 + -0.3
543,267 - -1.0
543,273 - -0.4
543,277 - +1.8
543,288 + +0.2
543,288 + +0.8
543,288 + -0.4
543,307 + +0.4
543,307 + -0.7
543,355 + Echvi_0490 0.12 -0.7
543,355 + Echvi_0490 0.12 -0.3
543,479 + Echvi_0490 0.26 -0.2
543,637 + Echvi_0490 0.44 -0.5
543,637 + Echvi_0490 0.44 -2.1
543,638 - Echvi_0490 0.44 -2.1
543,641 + Echvi_0490 0.44 -1.0
543,642 - Echvi_0490 0.44 -2.0
543,642 - Echvi_0490 0.44 +1.3
543,716 + Echvi_0490 0.53 +0.4
543,716 + Echvi_0490 0.53 -0.2
543,716 + Echvi_0490 0.53 -0.6
543,716 + Echvi_0490 0.53 -0.6
543,789 + Echvi_0490 0.61 -1.0
543,789 + Echvi_0490 0.61 -0.6
543,916 - Echvi_0490 0.75 +2.4
543,916 - Echvi_0490 0.75 -0.7
543,918 + Echvi_0490 0.76 +2.1
543,919 - Echvi_0490 0.76 -0.5
544,015 + Echvi_0490 0.87 -0.2
544,015 + Echvi_0490 0.87 -0.5
544,016 - Echvi_0490 0.87 -1.9
544,031 - Echvi_0490 0.88 +1.8
544,050 - -2.1
544,050 - +0.3

Or see this region's nucleotide sequence