Experiment: m.b. A22 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0259 and Echvi_0260 are separated by 99 nucleotides Echvi_0260 and Echvi_0261 are separated by 168 nucleotides Echvi_0261 and Echvi_0262 are separated by 50 nucleotides
Echvi_0259: Echvi_0259 - ribosomal protein S12, bacterial/organelle, at 262,214 to 262,594
_0259
Echvi_0260: Echvi_0260 - Protein of unknown function (DUF3467)., at 262,694 to 263,023
_0260
Echvi_0261: Echvi_0261 - DNA-directed RNA polymerase, beta' subunit, predominant form, at 263,192 to 267,505
_0261
Echvi_0262: Echvi_0262 - DNA-directed RNA polymerase, beta subunit, at 267,556 to 271,431
_0262
Position (kb) 263
264
265
266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 262.757 kb on + strand, within Echvi_0260 at 262.763 kb on - strand, within Echvi_0260 at 262.840 kb on + strand, within Echvi_0260 at 262.840 kb on + strand, within Echvi_0260 at 262.941 kb on + strand, within Echvi_0260 at 262.941 kb on + strand, within Echvi_0260 at 263.011 kb on + strand at 263.012 kb on - strand at 263.012 kb on - strand at 263.012 kb on - strand at 263.014 kb on + strand at 263.057 kb on - strand at 263.057 kb on - strand at 263.110 kb on + strand at 263.111 kb on - strand at 267.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.04 mg/ml remove 262,757 + Echvi_0260 0.19 +0.3 262,763 - Echvi_0260 0.21 +1.3 262,840 + Echvi_0260 0.44 +0.7 262,840 + Echvi_0260 0.44 -0.1 262,941 + Echvi_0260 0.75 +1.2 262,941 + Echvi_0260 0.75 +0.9 263,011 + +0.5 263,012 - +0.1 263,012 - -1.8 263,012 - +0.6 263,014 + +0.3 263,057 - +2.8 263,057 - +0.0 263,110 + -1.0 263,111 - -0.1 267,558 - -0.8
Or see this region's nucleotide sequence