Strain Fitness in Escherichia coli BW25113 around b4519
Experiment: Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cephalothin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,209,648 | + | +0.0 | |||
1,209,648 | + | -0.2 | |||
1,209,663 | + | mcrA | b1159 | 0.11 | +0.6 |
1,209,743 | + | mcrA | b1159 | 0.21 | -0.3 |
1,209,769 | + | mcrA | b1159 | 0.24 | -0.1 |
1,210,309 | + | mcrA | b1159 | 0.89 | +1.6 |
1,210,442 | - | +0.6 | |||
1,210,631 | + | +0.4 | |||
1,210,631 | + | +2.1 | |||
1,210,646 | + | +1.8 | |||
1,210,646 | + | +0.2 | |||
1,210,646 | + | +0.8 | |||
1,210,655 | + | icdC | b4519 | 0.12 | -1.5 |
1,210,664 | + | icdC | b4519 | 0.17 | +0.2 |
1,210,666 | + | icdC | b4519 | 0.18 | +1.3 |
1,210,666 | + | icdC | b4519 | 0.18 | +0.1 |
1,210,684 | + | icdC | b4519 | 0.29 | +0.1 |
1,210,710 | + | icdC | b4519 | 0.45 | -1.5 |
1,210,733 | + | icdC | b4519 | 0.59 | -0.2 |
1,210,745 | + | icdC | b4519 | 0.66 | -1.2 |
1,210,753 | + | icdC | b4519 | 0.71 | +0.4 |
1,210,753 | + | icdC | b4519 | 0.71 | +1.4 |
1,210,753 | + | icdC | b4519 | 0.71 | -0.3 |
1,210,753 | + | icdC | b4519 | 0.71 | +0.1 |
1,210,769 | + | icdC | b4519 | 0.81 | +1.8 |
1,210,794 | + | +0.5 | |||
1,210,812 | + | -0.4 | |||
1,210,812 | + | -1.9 | |||
1,210,982 | - | elbA | b1160 | 0.24 | -0.1 |
1,210,987 | - | elbA | b1160 | 0.26 | +0.2 |
Or see this region's nucleotide sequence