Strain Fitness in Escherichia coli BW25113 around b4063

Experiment: Cephalothin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.01 mg/ml
4,274,497	-	yjcC	b4061	0.63	+0.0
4,274,525	-	yjcC	b4061	0.65	-2.0
4,274,542	+	yjcC	b4061	0.66	+0.6
4,274,542	+	yjcC	b4061	0.66	+1.0
4,274,545	-	yjcC	b4061	0.66	+0.6
4,274,545	-	yjcC	b4061	0.66	+1.9
4,274,547	-	yjcC	b4061	0.66	-0.2
4,274,550	+	yjcC	b4061	0.67	+0.6
4,274,592	+	yjcC	b4061	0.69	+1.6
4,274,592	+	yjcC	b4061	0.69	+1.3
4,274,602	-	yjcC	b4061	0.70	+1.0
4,274,607	-	yjcC	b4061	0.70	+0.4
4,274,607	-	yjcC	b4061	0.70	-1.1
4,274,607	-	yjcC	b4061	0.70	+1.9
4,274,607	-	yjcC	b4061	0.70	-0.6
4,274,611	-	yjcC	b4061	0.70	-0.5
4,274,616	-	yjcC	b4061	0.71	-0.7
4,274,618	+	yjcC	b4061	0.71	+0.3
4,274,629	+	yjcC	b4061	0.72	-0.4
4,274,629	+	yjcC	b4061	0.72	-1.2
4,274,629	-	yjcC	b4061	0.72	-0.4
4,274,630	-	yjcC	b4061	0.72	-0.7
4,274,630	-	yjcC	b4061	0.72	-1.0
4,274,640	+	yjcC	b4061	0.72	-0.4
4,274,646	+	yjcC	b4061	0.73	-1.4
4,274,646	+	yjcC	b4061	0.73	+0.6
4,274,677	-	yjcC	b4061	0.75	-0.6
4,274,721	-	yjcC	b4061	0.77	+1.6
4,274,725	+	yjcC	b4061	0.78	+0.2
4,274,725	+	yjcC	b4061	0.78	+4.1
4,274,729	+	yjcC	b4061	0.78	-0.4
4,274,739	+	yjcC	b4061	0.78	-0.4
4,274,747	-	yjcC	b4061	0.79	+0.6
4,274,747	-	yjcC	b4061	0.79	+2.5
4,274,762	+	yjcC	b4061	0.80	+2.0
4,274,776	+	yjcC	b4061	0.81	+0.6
4,274,776	+	yjcC	b4061	0.81	+0.2
4,274,776	+	yjcC	b4061	0.81	+0.6
4,274,777	+	yjcC	b4061	0.81	-0.7
4,274,777	+	yjcC	b4061	0.81	-0.1
4,274,784	-	yjcC	b4061	0.81	+2.6
4,274,784	-	yjcC	b4061	0.81	-0.4
4,274,784	-	yjcC	b4061	0.81	+0.7
4,274,784	-	yjcC	b4061	0.81	+0.4
4,274,784	-	yjcC	b4061	0.81	+0.6
4,274,785	-	yjcC	b4061	0.81	+1.3
4,274,785	-	yjcC	b4061	0.81	-1.2
4,274,785	-	yjcC	b4061	0.81	-1.7
4,274,855	+	yjcC	b4061	0.86	+0.2
4,274,863	-	yjcC	b4061	0.86	+0.8
4,274,882	+	yjcC	b4061	0.87	+2.2
4,274,895	+	yjcC	b4061	0.88	-0.4
4,274,895	+	yjcC	b4061	0.88	-2.4
4,274,895	-	yjcC	b4061	0.88	+0.1
4,274,895	-	yjcC	b4061	0.88	-1.3
4,274,897	+	yjcC	b4061	0.88	+1.1
4,274,901	-	yjcC	b4061	0.89	+3.6
4,274,901	-	yjcC	b4061	0.89	-0.4
4,274,911	+	yjcC	b4061	0.89	+0.6
4,274,923	-				-1.0
4,274,949	+				+0.2
4,274,951	+				+0.3
4,274,951	+				+1.2
4,274,959	-				+0.6
4,274,981	+				-0.2
4,274,999	-				+2.3
4,274,999	-				-0.4
4,275,040	-				+0.4
4,275,144	-	soxS	b4062	0.19	-0.9
4,275,169	+	soxS	b4062	0.27	-0.4
4,275,229	-	soxS	b4062	0.45	-1.0
4,275,346	-	soxS	b4062	0.81	-1.0
4,275,362	-	soxS	b4062	0.86	-1.0
4,275,589	+	soxR	b4063	0.21	-1.0
4,275,718	+	soxR	b4063	0.49	-1.2
4,275,739	+	soxR	b4063	0.53	-0.5
4,275,751	-	soxR	b4063	0.56	+1.5
4,275,751	-	soxR	b4063	0.56	+1.4
4,275,784	+	soxR	b4063	0.63	+0.0
4,275,816	-	soxR	b4063	0.70	+1.6
4,275,816	-	soxR	b4063	0.70	+2.5
4,275,852	+				+0.6
4,276,130	+				+0.0
4,276,194	+				-0.8
4,276,194	+				-1.3
4,276,194	+				+0.1
4,276,202	-				+1.9
4,276,202	-				+0.6
4,276,202	-				+0.9
4,276,423	-				+1.8
4,276,423	-				+1.3
4,276,564	+				+0.3
4,276,596	+				-1.0
4,276,618	+				+0.5
4,276,618	+				+1.9
4,276,618	+				-2.0
4,276,628	+				+0.0
4,276,638	+	yjcD	b4064	0.10	-0.6
4,276,638	+	yjcD	b4064	0.10	+1.1
4,276,656	+	yjcD	b4064	0.11	+0.1
4,276,656	+	yjcD	b4064	0.11	-3.3
4,276,671	-	yjcD	b4064	0.13	+1.1
4,276,794	+	yjcD	b4064	0.22	+1.3
4,276,834	+	yjcD	b4064	0.25	-0.4
4,276,834	+	yjcD	b4064	0.25	-1.0
4,276,841	+	yjcD	b4064	0.25	-1.4
4,276,856	+	yjcD	b4064	0.26	-0.8
4,276,922	+	yjcD	b4064	0.31	+1.9
4,276,932	+	yjcD	b4064	0.32	+1.1
4,276,946	-	yjcD	b4064	0.33	-1.7