Strain Fitness in Escherichia coli BW25113 around b2802

Experiment: Cephalothin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfucP and fucI are separated by 32 nucleotidesfucI and fucK are separated by 78 nucleotides b2801: fucP - L-fucose transporter (NCBI), at 2,932,257 to 2,933,573 fucP b2802: fucI - L-fucose isomerase (NCBI), at 2,933,606 to 2,935,381 fucI b2803: fucK - L-fuculokinase (NCBI), at 2,935,460 to 2,936,908 fucK Position (kb) 2933 2934 2935 2936Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2932.638 kb on - strand, within fucPat 2932.652 kb on - strand, within fucPat 2932.652 kb on - strand, within fucPat 2932.652 kb on - strand, within fucPat 2932.696 kb on - strand, within fucPat 2932.816 kb on - strand, within fucPat 2932.816 kb on - strand, within fucPat 2932.823 kb on + strand, within fucPat 2932.844 kb on + strand, within fucPat 2932.847 kb on - strand, within fucPat 2932.847 kb on - strand, within fucPat 2932.852 kb on - strand, within fucPat 2932.862 kb on - strand, within fucPat 2932.866 kb on - strand, within fucPat 2932.866 kb on - strand, within fucPat 2932.873 kb on - strand, within fucPat 2932.873 kb on - strand, within fucPat 2932.878 kb on + strand, within fucPat 2932.878 kb on + strand, within fucPat 2932.886 kb on - strand, within fucPat 2932.890 kb on + strand, within fucPat 2932.890 kb on + strand, within fucPat 2932.896 kb on + strand, within fucPat 2932.899 kb on + strand, within fucPat 2932.906 kb on - strand, within fucPat 2932.906 kb on - strand, within fucPat 2932.910 kb on + strand, within fucPat 2932.911 kb on + strand, within fucPat 2932.911 kb on - strand, within fucPat 2932.911 kb on - strand, within fucPat 2932.912 kb on + strand, within fucPat 2932.912 kb on + strand, within fucPat 2932.917 kb on - strand, within fucPat 2932.917 kb on - strand, within fucPat 2932.921 kb on + strand, within fucPat 2932.939 kb on + strand, within fucPat 2932.954 kb on - strand, within fucPat 2932.994 kb on + strand, within fucPat 2933.076 kb on + strand, within fucPat 2933.110 kb on - strand, within fucPat 2933.112 kb on - strand, within fucPat 2933.142 kb on - strand, within fucPat 2933.260 kb on + strand, within fucPat 2933.260 kb on + strand, within fucPat 2933.260 kb on + strand, within fucPat 2933.268 kb on - strand, within fucPat 2933.268 kb on - strand, within fucPat 2933.268 kb on - strand, within fucPat 2933.348 kb on + strand, within fucPat 2933.348 kb on + strand, within fucPat 2933.358 kb on - strand, within fucPat 2933.409 kb on + strand, within fucPat 2933.461 kb on - strandat 2933.461 kb on - strandat 2933.659 kb on + strandat 2933.659 kb on + strandat 2933.743 kb on - strandat 2933.859 kb on + strand, within fucIat 2933.859 kb on + strand, within fucIat 2933.911 kb on - strand, within fucIat 2933.911 kb on - strand, within fucIat 2933.915 kb on - strand, within fucIat 2933.968 kb on - strand, within fucIat 2934.139 kb on + strand, within fucIat 2934.298 kb on + strand, within fucIat 2934.306 kb on - strand, within fucIat 2934.306 kb on - strand, within fucIat 2934.380 kb on + strand, within fucIat 2934.388 kb on - strand, within fucIat 2934.397 kb on + strand, within fucIat 2934.514 kb on + strand, within fucIat 2934.522 kb on - strand, within fucIat 2934.533 kb on - strand, within fucIat 2934.536 kb on + strand, within fucIat 2934.536 kb on + strand, within fucIat 2934.546 kb on - strand, within fucIat 2934.546 kb on - strand, within fucIat 2934.554 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.565 kb on - strand, within fucIat 2934.622 kb on - strand, within fucIat 2934.643 kb on + strand, within fucIat 2934.671 kb on + strand, within fucIat 2934.692 kb on + strand, within fucIat 2934.762 kb on + strand, within fucIat 2935.022 kb on - strand, within fucIat 2935.044 kb on - strand, within fucIat 2935.101 kb on + strand, within fucIat 2935.126 kb on - strand, within fucIat 2935.153 kb on + strand, within fucIat 2935.156 kb on + strand, within fucIat 2935.156 kb on + strand, within fucIat 2935.186 kb on + strand, within fucIat 2935.186 kb on + strand, within fucIat 2935.236 kb on + strandat 2935.236 kb on + strandat 2935.300 kb on + strandat 2935.321 kb on + strandat 2935.378 kb on + strandat 2935.398 kb on - strandat 2935.432 kb on - strandat 2935.433 kb on + strandat 2935.504 kb on - strandat 2935.504 kb on - strandat 2935.518 kb on + strandat 2935.589 kb on - strandat 2935.686 kb on + strand, within fucKat 2935.817 kb on + strand, within fucKat 2935.929 kb on + strand, within fucKat 2935.929 kb on + strand, within fucKat 2936.145 kb on - strand, within fucKat 2936.230 kb on + strand, within fucKat 2936.304 kb on + strand, within fucKat 2936.330 kb on + strand, within fucKat 2936.330 kb on + strand, within fucK

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.01 mg/ml
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2,932,638 - fucP b2801 0.29 -0.1
2,932,652 - fucP b2801 0.30 +0.2
2,932,652 - fucP b2801 0.30 -0.4
2,932,652 - fucP b2801 0.30 +0.5
2,932,696 - fucP b2801 0.33 -1.9
2,932,816 - fucP b2801 0.42 +1.0
2,932,816 - fucP b2801 0.42 +0.5
2,932,823 + fucP b2801 0.43 +3.2
2,932,844 + fucP b2801 0.45 +0.2
2,932,847 - fucP b2801 0.45 +0.6
2,932,847 - fucP b2801 0.45 -0.6
2,932,852 - fucP b2801 0.45 +0.5
2,932,862 - fucP b2801 0.46 +0.9
2,932,866 - fucP b2801 0.46 +0.0
2,932,866 - fucP b2801 0.46 +2.1
2,932,873 - fucP b2801 0.47 +0.2
2,932,873 - fucP b2801 0.47 +1.2
2,932,878 + fucP b2801 0.47 -1.8
2,932,878 + fucP b2801 0.47 +0.6
2,932,886 - fucP b2801 0.48 -1.2
2,932,890 + fucP b2801 0.48 +1.2
2,932,890 + fucP b2801 0.48 +0.4
2,932,896 + fucP b2801 0.49 -0.1
2,932,899 + fucP b2801 0.49 -1.2
2,932,906 - fucP b2801 0.49 -0.5
2,932,906 - fucP b2801 0.49 +0.2
2,932,910 + fucP b2801 0.50 +0.4
2,932,911 + fucP b2801 0.50 -1.1
2,932,911 - fucP b2801 0.50 +1.2
2,932,911 - fucP b2801 0.50 +1.0
2,932,912 + fucP b2801 0.50 +0.2
2,932,912 + fucP b2801 0.50 -1.4
2,932,917 - fucP b2801 0.50 -1.4
2,932,917 - fucP b2801 0.50 +1.2
2,932,921 + fucP b2801 0.50 +0.6
2,932,939 + fucP b2801 0.52 +0.2
2,932,954 - fucP b2801 0.53 +0.6
2,932,994 + fucP b2801 0.56 -3.1
2,933,076 + fucP b2801 0.62 -1.1
2,933,110 - fucP b2801 0.65 -0.1
2,933,112 - fucP b2801 0.65 -0.1
2,933,142 - fucP b2801 0.67 -0.1
2,933,260 + fucP b2801 0.76 -1.1
2,933,260 + fucP b2801 0.76 -3.1
2,933,260 + fucP b2801 0.76 -0.9
2,933,268 - fucP b2801 0.77 -1.8
2,933,268 - fucP b2801 0.77 -0.8
2,933,268 - fucP b2801 0.77 +0.0
2,933,348 + fucP b2801 0.83 -2.6
2,933,348 + fucP b2801 0.83 -2.8
2,933,358 - fucP b2801 0.84 +0.2
2,933,409 + fucP b2801 0.87 -1.9
2,933,461 - +0.2
2,933,461 - +0.0
2,933,659 + +0.2
2,933,659 + +0.2
2,933,743 - -1.4
2,933,859 + fucI b2802 0.14 +1.2
2,933,859 + fucI b2802 0.14 -0.8
2,933,911 - fucI b2802 0.17 -2.1
2,933,911 - fucI b2802 0.17 +0.2
2,933,915 - fucI b2802 0.17 -0.1
2,933,968 - fucI b2802 0.20 +1.2
2,934,139 + fucI b2802 0.30 +0.2
2,934,298 + fucI b2802 0.39 -0.5
2,934,306 - fucI b2802 0.39 -2.4
2,934,306 - fucI b2802 0.39 +0.2
2,934,380 + fucI b2802 0.44 -0.5
2,934,388 - fucI b2802 0.44 +0.7
2,934,397 + fucI b2802 0.45 -0.4
2,934,514 + fucI b2802 0.51 +1.7
2,934,522 - fucI b2802 0.52 -0.8
2,934,533 - fucI b2802 0.52 +1.8
2,934,536 + fucI b2802 0.52 -1.8
2,934,536 + fucI b2802 0.52 +0.8
2,934,546 - fucI b2802 0.53 +0.2
2,934,546 - fucI b2802 0.53 -0.4
2,934,554 - fucI b2802 0.53 +0.2
2,934,565 - fucI b2802 0.54 +1.0
2,934,565 - fucI b2802 0.54 +0.2
2,934,565 - fucI b2802 0.54 +2.5
2,934,565 - fucI b2802 0.54 -2.1
2,934,622 - fucI b2802 0.57 +1.0
2,934,643 + fucI b2802 0.58 -0.4
2,934,671 + fucI b2802 0.60 +0.9
2,934,692 + fucI b2802 0.61 +0.6
2,934,762 + fucI b2802 0.65 -1.6
2,935,022 - fucI b2802 0.80 -0.4
2,935,044 - fucI b2802 0.81 -0.4
2,935,101 + fucI b2802 0.84 -2.6
2,935,126 - fucI b2802 0.86 -0.7
2,935,153 + fucI b2802 0.87 -0.8
2,935,156 + fucI b2802 0.87 -0.8
2,935,156 + fucI b2802 0.87 +1.2
2,935,186 + fucI b2802 0.89 -0.8
2,935,186 + fucI b2802 0.89 -0.8
2,935,236 + +0.6
2,935,236 + -0.1
2,935,300 + -2.4
2,935,321 + -1.8
2,935,378 + -0.4
2,935,398 - -0.3
2,935,432 - -1.5
2,935,433 + +0.8
2,935,504 - -0.8
2,935,504 - -0.5
2,935,518 + -1.1
2,935,589 - -0.1
2,935,686 + fucK b2803 0.16 +0.8
2,935,817 + fucK b2803 0.25 -0.8
2,935,929 + fucK b2803 0.32 -0.8
2,935,929 + fucK b2803 0.32 +0.5
2,936,145 - fucK b2803 0.47 -0.7
2,936,230 + fucK b2803 0.53 -2.2
2,936,304 + fucK b2803 0.58 -1.4
2,936,330 + fucK b2803 0.60 +1.0
2,936,330 + fucK b2803 0.60 -0.1

Or see this region's nucleotide sequence