Strain Fitness in Escherichia coli BW25113 around b2520

Experiment: Cephalothin 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.01 mg/ml
2,644,379	+	pbpC	b2519	0.58	-1.0
2,644,626	-	pbpC	b2519	0.69	+0.6
2,644,651	+	pbpC	b2519	0.70	+0.1
2,644,752	+	pbpC	b2519	0.74	+0.0
2,644,781	+	pbpC	b2519	0.75	-2.3
2,644,781	+	pbpC	b2519	0.75	-1.8
2,644,928	-	pbpC	b2519	0.82	+0.3
2,644,993	-	pbpC	b2519	0.85	-1.2
2,645,046	-	pbpC	b2519	0.87	-0.3
2,645,113	+	pbpC	b2519	0.90	+0.6
2,645,218	+				+0.6
2,645,250	-				-1.3
2,645,255	+				-0.3
2,645,255	+				+0.0
2,645,331	+				-0.6
2,645,331	+				+1.6
2,645,403	+				-0.2
2,645,411	-				-0.3
2,645,484	+				+0.9
2,645,576	+				+0.2
2,645,712	-				-0.6
2,645,715	-				+1.0
2,645,784	-				+0.0
2,645,784	-				+1.2
2,645,885	-	yfhM	b2520	0.11	+0.0
2,645,940	+	yfhM	b2520	0.12	-1.0
2,645,945	+	yfhM	b2520	0.12	+0.0
2,645,945	+	yfhM	b2520	0.12	-2.6
2,645,955	-	yfhM	b2520	0.12	+1.3
2,646,087	+	yfhM	b2520	0.15	-3.3
2,646,101	+	yfhM	b2520	0.15	+0.6
2,646,169	-	yfhM	b2520	0.17	-1.0
2,646,241	+	yfhM	b2520	0.18	-1.1
2,646,241	+	yfhM	b2520	0.18	+2.2
2,646,251	-	yfhM	b2520	0.18	+0.0
2,646,375	+	yfhM	b2520	0.21	-0.7
2,646,383	-	yfhM	b2520	0.21	-0.1
2,646,383	-	yfhM	b2520	0.21	-1.1
2,646,432	-	yfhM	b2520	0.22	-1.3
2,646,664	-	yfhM	b2520	0.27	+0.5
2,646,711	-	yfhM	b2520	0.27	-0.2
2,646,715	-	yfhM	b2520	0.28	+1.1
2,646,753	-	yfhM	b2520	0.28	-1.4
2,646,753	-	yfhM	b2520	0.28	+1.0
2,646,889	-	yfhM	b2520	0.31	+0.8
2,646,978	+	yfhM	b2520	0.33	-1.4
2,647,037	-	yfhM	b2520	0.34	-1.6
2,647,037	-	yfhM	b2520	0.34	+0.0
2,647,089	-	yfhM	b2520	0.35	-0.2
2,647,174	+	yfhM	b2520	0.37	-0.3
2,647,364	-	yfhM	b2520	0.41	-0.2
2,647,375	-	yfhM	b2520	0.41	-0.6
2,647,375	-	yfhM	b2520	0.41	-0.3
2,647,408	-	yfhM	b2520	0.42	-1.8
2,647,472	-	yfhM	b2520	0.43	-1.0
2,647,543	-	yfhM	b2520	0.44	-2.0
2,647,543	-	yfhM	b2520	0.44	-1.0
2,647,624	-	yfhM	b2520	0.46	-1.1
2,647,624	-	yfhM	b2520	0.46	-0.3
2,647,797	+	yfhM	b2520	0.49	-2.8
2,647,797	+	yfhM	b2520	0.49	+0.4
2,647,810	-	yfhM	b2520	0.50	+0.9
2,647,810	-	yfhM	b2520	0.50	-0.2
2,647,828	+	yfhM	b2520	0.50	+0.4
2,647,828	+	yfhM	b2520	0.50	+0.0
2,647,979	+	yfhM	b2520	0.53	-0.7
2,648,028	-	yfhM	b2520	0.54	-0.5
2,648,050	+	yfhM	b2520	0.54	+1.0
2,648,050	+	yfhM	b2520	0.54	+0.0
2,648,094	+	yfhM	b2520	0.55	+0.8
2,648,094	+	yfhM	b2520	0.55	+1.6
2,648,143	+	yfhM	b2520	0.56	-0.4
2,648,409	-	yfhM	b2520	0.62	+0.8
2,648,467	-	yfhM	b2520	0.63	-0.6
2,648,489	+	yfhM	b2520	0.63	-1.0
2,648,489	+	yfhM	b2520	0.63	-1.0
2,648,547	+	yfhM	b2520	0.64	-1.0
2,648,613	+	yfhM	b2520	0.66	-0.8
2,648,646	-	yfhM	b2520	0.66	-3.1
2,648,646	-	yfhM	b2520	0.66	+0.8
2,648,739	+	yfhM	b2520	0.68	-2.0
2,648,766	-	yfhM	b2520	0.69	-1.4
2,648,843	-	yfhM	b2520	0.70	+0.3
2,648,896	-	yfhM	b2520	0.72	-0.7
2,648,896	-	yfhM	b2520	0.72	+1.4
2,648,948	+	yfhM	b2520	0.73	+2.4
2,648,948	+	yfhM	b2520	0.73	-0.8
2,648,990	-	yfhM	b2520	0.73	+0.3
2,648,990	-	yfhM	b2520	0.73	-1.6
2,649,000	-	yfhM	b2520	0.74	-0.7
2,649,013	-	yfhM	b2520	0.74	+1.0
2,649,013	-	yfhM	b2520	0.74	-0.5
2,649,034	+	yfhM	b2520	0.74	-1.0
2,649,034	+	yfhM	b2520	0.74	+0.0
2,649,075	+	yfhM	b2520	0.75	-1.2
2,649,156	+	yfhM	b2520	0.77	+0.0
2,649,300	-	yfhM	b2520	0.80	-1.2
2,649,311	-	yfhM	b2520	0.80	+0.0
2,649,311	-	yfhM	b2520	0.80	+0.3
2,649,315	+	yfhM	b2520	0.80	+0.0
2,649,467	+	yfhM	b2520	0.83	-1.0
2,649,467	+	yfhM	b2520	0.83	-1.0
2,649,566	+	yfhM	b2520	0.85	-2.4
2,649,602	+	yfhM	b2520	0.86	-1.0
2,649,608	-	yfhM	b2520	0.86	-1.0
2,649,608	-	yfhM	b2520	0.86	-2.0
2,649,695	+	yfhM	b2520	0.88	-1.4
2,649,695	+	yfhM	b2520	0.88	+0.6
2,649,701	-	yfhM	b2520	0.88	+0.5
2,649,720	+	yfhM	b2520	0.88	-0.2
2,649,787	-	yfhM	b2520	0.89	+0.0
2,649,787	-	yfhM	b2520	0.89	+1.6
2,650,071	-				+1.0
2,650,180	+				+2.2
2,650,180	+				-1.5
2,650,281	-				+0.6
2,650,328	-				+0.0
2,650,521	-				+0.2
2,650,627	-	sseA	b2521	0.13	+0.6
2,650,627	-	sseA	b2521	0.13	-0.4
2,650,638	-	sseA	b2521	0.14	+0.0
2,650,640	+	sseA	b2521	0.15	+0.0
2,650,640	+	sseA	b2521	0.15	-1.5
2,650,711	+	sseA	b2521	0.23	+0.0
2,650,829	+	sseA	b2521	0.37	-2.7
2,650,829	+	sseA	b2521	0.37	+1.4
2,650,829	+	sseA	b2521	0.37	+0.0
2,650,829	+	sseA	b2521	0.37	-1.0
2,650,911	+	sseA	b2521	0.47	-0.3
2,650,911	+	sseA	b2521	0.47	+0.5
2,650,924	+	sseA	b2521	0.48	-0.4
2,651,060	-	sseA	b2521	0.64	+0.5
2,651,060	-	sseA	b2521	0.64	+0.0
2,651,078	+	sseA	b2521	0.66	-1.8
2,651,091	-	sseA	b2521	0.68	+0.7
2,651,091	-	sseA	b2521	0.68	+0.0
2,651,105	+	sseA	b2521	0.70	-1.3
2,651,150	+	sseA	b2521	0.75	-0.5
2,651,195	+	sseA	b2521	0.80	-0.3
2,651,195	+	sseA	b2521	0.80	-2.3
2,651,231	+	sseA	b2521	0.85	+0.5
2,651,231	+	sseA	b2521	0.85	-0.2
2,651,245	-	sseA	b2521	0.86	-0.4
2,651,248	+	sseA	b2521	0.87	-0.5
2,651,254	+	sseA	b2521	0.87	-1.5
2,651,254	+	sseA	b2521	0.87	-1.3
2,651,293	+				-1.5
2,651,294	-				+1.5
2,651,294	-				+1.4
2,651,296	+				-1.8
2,651,296	+				+0.0
2,651,306	+				-0.6