Strain Fitness in Escherichia coli BW25113 around b1867
Experiment: Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cephalothin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,948,556 | - | -0.3 | |||
1,948,718 | - | -0.7 | |||
1,948,761 | + | -0.7 | |||
1,948,771 | + | -2.3 | |||
1,948,859 | - | +0.2 | |||
1,948,859 | - | +1.5 | |||
1,948,932 | + | yecD | b1867 | 0.13 | +0.7 |
1,949,048 | + | yecD | b1867 | 0.34 | -0.3 |
1,949,173 | + | yecD | b1867 | 0.56 | +0.7 |
1,949,173 | + | yecD | b1867 | 0.56 | -0.3 |
1,949,179 | - | yecD | b1867 | 0.57 | -1.0 |
1,949,186 | + | yecD | b1867 | 0.58 | -2.8 |
1,949,186 | + | yecD | b1867 | 0.58 | +1.5 |
1,949,189 | - | yecD | b1867 | 0.59 | -1.1 |
1,949,228 | + | yecD | b1867 | 0.66 | +1.2 |
1,949,228 | + | yecD | b1867 | 0.66 | +0.3 |
1,949,228 | - | yecD | b1867 | 0.66 | +0.7 |
1,949,228 | - | yecD | b1867 | 0.66 | +2.5 |
1,949,231 | - | yecD | b1867 | 0.66 | -1.3 |
1,949,349 | + | yecD | b1867 | 0.87 | -1.3 |
1,949,404 | - | +0.4 | |||
1,949,404 | - | +1.1 | |||
1,949,442 | - | -0.3 | |||
1,949,709 | + | yecE | b1868 | 0.35 | -1.3 |
1,949,709 | + | yecE | b1868 | 0.35 | -0.3 |
1,949,746 | - | yecE | b1868 | 0.40 | +0.3 |
1,949,842 | - | yecE | b1868 | 0.52 | -2.3 |
1,949,842 | - | yecE | b1868 | 0.52 | +0.9 |
1,949,931 | + | yecE | b1868 | 0.63 | +0.0 |
1,950,249 | + | +0.2 | |||
1,950,310 | - | +0.5 |
Or see this region's nucleotide sequence