Strain Fitness in Escherichia coli BW25113 around b1247
Experiment: Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cephalothin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,302,812 | + | -2.2 | |||
1,302,812 | + | -0.2 | |||
1,302,860 | + | +0.4 | |||
1,302,933 | + | oppD | b1246 | 0.15 | -1.2 |
1,303,045 | + | oppD | b1246 | 0.26 | -1.0 |
1,303,071 | + | oppD | b1246 | 0.29 | +0.6 |
1,303,132 | + | oppD | b1246 | 0.35 | -2.8 |
1,303,142 | + | oppD | b1246 | 0.36 | +0.8 |
1,303,155 | + | oppD | b1246 | 0.37 | -0.6 |
1,303,165 | + | oppD | b1246 | 0.38 | +1.1 |
1,303,201 | - | oppD | b1246 | 0.42 | -0.4 |
1,303,342 | - | oppD | b1246 | 0.56 | +0.4 |
1,303,359 | + | oppD | b1246 | 0.57 | +0.0 |
1,303,403 | - | oppD | b1246 | 0.62 | -0.8 |
1,303,405 | + | oppD | b1246 | 0.62 | -2.2 |
1,303,434 | - | oppD | b1246 | 0.65 | -0.7 |
1,303,439 | + | oppD | b1246 | 0.65 | -0.9 |
1,303,439 | + | oppD | b1246 | 0.65 | -2.2 |
1,303,517 | + | oppD | b1246 | 0.73 | -0.6 |
1,303,563 | + | oppD | b1246 | 0.77 | -1.5 |
1,303,571 | - | oppD | b1246 | 0.78 | -0.4 |
1,303,902 | + | oppF | b1247 | 0.11 | -2.1 |
1,303,914 | - | oppF | b1247 | 0.13 | -1.0 |
1,303,981 | + | oppF | b1247 | 0.19 | -1.4 |
1,303,981 | + | oppF | b1247 | 0.19 | +1.2 |
1,304,158 | + | oppF | b1247 | 0.37 | -0.2 |
1,304,294 | + | oppF | b1247 | 0.50 | -2.5 |
1,304,294 | + | oppF | b1247 | 0.50 | -1.5 |
1,304,367 | + | oppF | b1247 | 0.58 | -1.2 |
1,304,720 | + | +0.4 | |||
1,304,780 | - | -0.5 | |||
1,304,780 | - | -0.8 | |||
1,305,078 | - | b1248 | b1248 | 0.71 | -0.2 |
1,305,078 | - | b1248 | b1248 | 0.71 | -0.2 |
1,305,176 | + | +1.0 | |||
1,305,186 | + | -1.5 | |||
1,305,539 | + | cls | b1249 | 0.23 | -1.2 |
1,305,539 | + | cls | b1249 | 0.23 | -0.6 |
1,305,576 | - | cls | b1249 | 0.25 | +2.1 |
1,305,588 | - | cls | b1249 | 0.26 | +2.2 |
1,305,588 | - | cls | b1249 | 0.26 | -0.2 |
1,305,625 | - | cls | b1249 | 0.28 | +0.1 |
1,305,641 | + | cls | b1249 | 0.30 | -0.2 |
1,305,641 | + | cls | b1249 | 0.30 | +0.0 |
Or see this region's nucleotide sequence