Strain Fitness in Escherichia coli BW25113 around b0929
Experiment: Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cephalothin 0.01 mg/ml |
---|---|---|---|---|---|
remove | |||||
984,232 | - | aspC | b0928 | 0.41 | -1.1 |
984,326 | + | aspC | b0928 | 0.49 | +3.4 |
984,365 | - | aspC | b0928 | 0.52 | -2.4 |
984,402 | + | aspC | b0928 | 0.55 | +3.9 |
984,402 | + | aspC | b0928 | 0.55 | +2.8 |
984,535 | - | aspC | b0928 | 0.67 | +0.7 |
984,560 | + | aspC | b0928 | 0.69 | +3.8 |
984,560 | + | aspC | b0928 | 0.69 | +4.0 |
984,633 | + | aspC | b0928 | 0.75 | +3.2 |
984,633 | + | aspC | b0928 | 0.75 | +4.8 |
984,683 | - | aspC | b0928 | 0.79 | +0.2 |
984,792 | + | aspC | b0928 | 0.88 | +4.1 |
984,939 | + | +4.8 | |||
984,942 | + | +4.0 | |||
984,944 | + | +4.7 | |||
984,975 | + | +4.2 | |||
985,123 | - | +4.7 | |||
985,169 | + | +6.3 | |||
985,240 | + | ompF | b0929 | 0.11 | +6.0 |
985,259 | - | ompF | b0929 | 0.13 | +6.2 |
985,483 | + | ompF | b0929 | 0.34 | +6.2 |
985,548 | - | ompF | b0929 | 0.40 | +4.6 |
985,548 | - | ompF | b0929 | 0.40 | +6.5 |
985,682 | + | ompF | b0929 | 0.52 | +5.8 |
985,682 | + | ompF | b0929 | 0.52 | +5.7 |
985,805 | + | ompF | b0929 | 0.63 | +6.3 |
985,813 | - | ompF | b0929 | 0.64 | +5.9 |
985,880 | - | ompF | b0929 | 0.70 | +5.6 |
985,934 | + | ompF | b0929 | 0.75 | +6.4 |
985,934 | + | ompF | b0929 | 0.75 | +6.6 |
986,017 | + | ompF | b0929 | 0.83 | +4.5 |
986,017 | + | ompF | b0929 | 0.83 | +6.6 |
986,164 | - | +7.3 | |||
986,164 | - | +5.8 | |||
986,179 | - | +5.1 | |||
986,217 | - | +4.9 | |||
986,217 | - | +5.3 | |||
986,445 | - | -2.1 |
Or see this region's nucleotide sequence