Experiment: Cephalothin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliB and yliC are separated by 17 nucleotides yliC and yliD are separated by 2 nucleotides yliD and yliE are separated by 177 nucleotides
b0830: yliB - predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 868,634 to 870,172
yliB
b0831: yliC - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 870,190 to 871,110
yliC
b0832: yliD - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 871,113 to 872,024
yliD
b0833: yliE - conserved inner membrane protein (NCBI), at 872,202 to 874,550
yliE
Position (kb) 871
872
873 Strain fitness (log2 ratio) -1
0
1
2 at 870.136 kb on - strand at 870.209 kb on - strand at 870.209 kb on - strand at 870.274 kb on + strand at 870.347 kb on - strand, within yliC at 870.379 kb on - strand, within yliC at 870.411 kb on - strand, within yliC at 870.426 kb on + strand, within yliC at 870.590 kb on - strand, within yliC at 870.598 kb on - strand, within yliC at 870.796 kb on + strand, within yliC at 870.852 kb on - strand, within yliC at 870.883 kb on - strand, within yliC at 870.923 kb on + strand, within yliC at 871.104 kb on - strand at 871.104 kb on - strand at 871.111 kb on + strand at 871.111 kb on + strand at 871.168 kb on + strand at 871.168 kb on + strand at 871.188 kb on - strand at 871.363 kb on - strand, within yliD at 871.363 kb on - strand, within yliD at 871.368 kb on - strand, within yliD at 871.381 kb on + strand, within yliD at 871.381 kb on + strand, within yliD at 871.589 kb on + strand, within yliD at 871.678 kb on + strand, within yliD at 871.691 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.722 kb on - strand, within yliD at 871.722 kb on - strand, within yliD at 871.757 kb on + strand, within yliD at 871.757 kb on + strand, within yliD at 871.765 kb on - strand, within yliD at 871.765 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.857 kb on - strand, within yliD at 871.863 kb on + strand, within yliD at 871.864 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.877 kb on - strand, within yliD at 871.877 kb on - strand, within yliD at 871.881 kb on + strand, within yliD at 871.881 kb on + strand, within yliD at 871.890 kb on - strand, within yliD at 871.902 kb on + strand, within yliD at 871.986 kb on + strand at 871.986 kb on + strand at 871.987 kb on + strand at 871.987 kb on + strand at 872.088 kb on - strand at 872.179 kb on + strand at 872.304 kb on + strand at 872.304 kb on + strand at 872.317 kb on + strand at 872.338 kb on + strand at 872.338 kb on + strand at 872.399 kb on + strand at 872.405 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.01 mg/ml remove 870,136 - -1.6 870,209 - +0.7 870,209 - -1.0 870,274 + +0.1 870,347 - yliC b0831 0.17 -1.0 870,379 - yliC b0831 0.21 -0.6 870,411 - yliC b0831 0.24 +0.4 870,426 + yliC b0831 0.26 +0.5 870,590 - yliC b0831 0.43 -0.5 870,598 - yliC b0831 0.44 +2.4 870,796 + yliC b0831 0.66 +1.2 870,852 - yliC b0831 0.72 +1.3 870,883 - yliC b0831 0.75 -0.0 870,923 + yliC b0831 0.80 -1.4 871,104 - +1.0 871,104 - +1.5 871,111 + +1.1 871,111 + +2.2 871,168 + -0.6 871,168 + +0.5 871,188 - -0.5 871,363 - yliD b0832 0.27 +0.6 871,363 - yliD b0832 0.27 -0.2 871,368 - yliD b0832 0.28 -0.6 871,381 + yliD b0832 0.29 +0.5 871,381 + yliD b0832 0.29 -0.0 871,589 + yliD b0832 0.52 +0.3 871,678 + yliD b0832 0.62 +0.5 871,691 + yliD b0832 0.63 +0.2 871,714 + yliD b0832 0.66 -0.0 871,714 + yliD b0832 0.66 +1.0 871,722 - yliD b0832 0.67 -1.0 871,722 - yliD b0832 0.67 -0.4 871,757 + yliD b0832 0.71 +0.5 871,757 + yliD b0832 0.71 +0.4 871,765 - yliD b0832 0.71 +0.5 871,765 - yliD b0832 0.71 -1.6 871,779 - yliD b0832 0.73 -0.8 871,779 - yliD b0832 0.73 +1.1 871,779 - yliD b0832 0.73 +1.0 871,779 - yliD b0832 0.73 +0.4 871,794 - yliD b0832 0.75 +0.5 871,794 - yliD b0832 0.75 -0.0 871,857 - yliD b0832 0.82 +0.1 871,863 + yliD b0832 0.82 +2.0 871,864 + yliD b0832 0.82 +0.3 871,869 + yliD b0832 0.83 -0.0 871,869 + yliD b0832 0.83 +1.3 871,877 - yliD b0832 0.84 -0.4 871,877 - yliD b0832 0.84 +1.4 871,881 + yliD b0832 0.84 +1.0 871,881 + yliD b0832 0.84 +1.7 871,890 - yliD b0832 0.85 +0.5 871,902 + yliD b0832 0.87 +1.0 871,986 + -0.0 871,986 + +2.4 871,987 + +1.0 871,987 + -1.0 872,088 - +1.3 872,179 + +0.6 872,304 + -1.6 872,304 + +1.0 872,317 + +0.7 872,338 + +0.7 872,338 + +0.3 872,399 + -0.1 872,405 + +0.4
Or see this region's nucleotide sequence