Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4664 and Echvi_4665 are separated by 8 nucleotides Echvi_4665 and Echvi_4666 are separated by 68 nucleotides Echvi_4666 and Echvi_4667 are separated by 84 nucleotides Echvi_4667 and Echvi_4668 are separated by 29 nucleotides Echvi_4668 and Echvi_4669 are separated by 149 nucleotides
Echvi_4664: Echvi_4664 - Histidinol phosphatase and related hydrolases of the PHP family, at 5,583,866 to 5,585,572
_4664
Echvi_4665: Echvi_4665 - hypothetical protein, at 5,585,581 to 5,585,868
_4665
Echvi_4666: Echvi_4666 - Cold shock proteins, at 5,585,937 to 5,586,128
_4666
Echvi_4667: Echvi_4667 - Phosphohistidine phosphatase SixA, at 5,586,213 to 5,586,701
_4667
Echvi_4668: Echvi_4668 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 5,586,731 to 5,587,456
_4668
Echvi_4669: Echvi_4669 - ATP-dependent protease HslVU, ATPase subunit, at 5,587,606 to 5,589,012
_4669
Position (kb) 5586
5587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5585.287 kb on + strand, within Echvi_4664 at 5585.288 kb on - strand, within Echvi_4664 at 5585.456 kb on + strand at 5585.457 kb on - strand at 5585.457 kb on - strand at 5585.488 kb on + strand at 5585.488 kb on + strand at 5585.489 kb on - strand at 5585.580 kb on + strand at 5585.581 kb on - strand at 5585.604 kb on + strand at 5585.607 kb on + strand at 5585.607 kb on + strand at 5585.637 kb on + strand, within Echvi_4665 at 5585.638 kb on - strand, within Echvi_4665 at 5585.642 kb on + strand, within Echvi_4665 at 5585.643 kb on - strand, within Echvi_4665 at 5585.643 kb on - strand, within Echvi_4665 at 5585.654 kb on + strand, within Echvi_4665 at 5585.655 kb on - strand, within Echvi_4665 at 5585.767 kb on + strand, within Echvi_4665 at 5585.768 kb on - strand, within Echvi_4665 at 5585.768 kb on - strand, within Echvi_4665 at 5585.768 kb on - strand, within Echvi_4665 at 5585.768 kb on - strand, within Echvi_4665 at 5585.856 kb on + strand at 5585.856 kb on + strand at 5585.867 kb on - strand at 5585.867 kb on - strand at 5585.955 kb on + strand at 5585.955 kb on + strand at 5585.992 kb on + strand, within Echvi_4666 at 5585.993 kb on - strand, within Echvi_4666 at 5585.993 kb on - strand, within Echvi_4666 at 5585.993 kb on - strand, within Echvi_4666 at 5585.993 kb on - strand, within Echvi_4666 at 5586.131 kb on + strand at 5586.135 kb on + strand at 5586.135 kb on + strand at 5586.149 kb on + strand at 5586.227 kb on + strand at 5586.264 kb on + strand, within Echvi_4667 at 5586.264 kb on + strand, within Echvi_4667 at 5586.264 kb on + strand, within Echvi_4667 at 5586.264 kb on + strand, within Echvi_4667 at 5586.265 kb on - strand, within Echvi_4667 at 5586.267 kb on - strand, within Echvi_4667 at 5586.267 kb on - strand, within Echvi_4667 at 5586.304 kb on + strand, within Echvi_4667 at 5586.341 kb on - strand, within Echvi_4667 at 5586.348 kb on - strand, within Echvi_4667 at 5586.462 kb on + strand, within Echvi_4667 at 5586.463 kb on - strand, within Echvi_4667 at 5586.488 kb on - strand, within Echvi_4667 at 5586.518 kb on + strand, within Echvi_4667 at 5586.543 kb on - strand, within Echvi_4667 at 5586.543 kb on - strand, within Echvi_4667 at 5586.543 kb on - strand, within Echvi_4667 at 5586.543 kb on - strand, within Echvi_4667 at 5586.555 kb on - strand, within Echvi_4667 at 5586.555 kb on - strand, within Echvi_4667 at 5586.562 kb on + strand, within Echvi_4667 at 5586.562 kb on + strand, within Echvi_4667 at 5586.562 kb on + strand, within Echvi_4667 at 5586.699 kb on + strand at 5586.733 kb on - strand at 5586.743 kb on + strand at 5586.744 kb on - strand at 5586.744 kb on - strand at 5586.744 kb on - strand at 5586.785 kb on + strand at 5586.786 kb on - strand at 5586.786 kb on - strand at 5586.786 kb on - strand at 5586.786 kb on - strand at 5586.789 kb on + strand at 5586.790 kb on - strand at 5586.841 kb on + strand, within Echvi_4668 at 5586.841 kb on + strand, within Echvi_4668 at 5587.142 kb on + strand, within Echvi_4668 at 5587.158 kb on + strand, within Echvi_4668 at 5587.158 kb on + strand, within Echvi_4668 at 5587.159 kb on - strand, within Echvi_4668 at 5587.159 kb on - strand, within Echvi_4668 at 5587.161 kb on - strand, within Echvi_4668 at 5587.161 kb on - strand, within Echvi_4668 at 5587.161 kb on - strand, within Echvi_4668 at 5587.161 kb on - strand, within Echvi_4668 at 5587.161 kb on - strand, within Echvi_4668 at 5587.161 kb on - strand, within Echvi_4668 at 5587.162 kb on + strand, within Echvi_4668 at 5587.162 kb on + strand, within Echvi_4668 at 5587.162 kb on + strand, within Echvi_4668 at 5587.163 kb on - strand, within Echvi_4668 at 5587.163 kb on - strand, within Echvi_4668 at 5587.163 kb on - strand, within Echvi_4668 at 5587.170 kb on - strand, within Echvi_4668 at 5587.171 kb on + strand, within Echvi_4668 at 5587.171 kb on + strand, within Echvi_4668 at 5587.171 kb on + strand, within Echvi_4668 at 5587.171 kb on + strand, within Echvi_4668 at 5587.171 kb on + strand, within Echvi_4668 at 5587.172 kb on - strand, within Echvi_4668 at 5587.203 kb on - strand, within Echvi_4668 at 5587.226 kb on - strand, within Echvi_4668 at 5587.226 kb on - strand, within Echvi_4668 at 5587.316 kb on - strand, within Echvi_4668 at 5587.318 kb on + strand, within Echvi_4668 at 5587.319 kb on - strand, within Echvi_4668 at 5587.372 kb on + strand, within Echvi_4668 at 5587.373 kb on - strand, within Echvi_4668 at 5587.375 kb on + strand, within Echvi_4668 at 5587.381 kb on + strand, within Echvi_4668 at 5587.381 kb on + strand, within Echvi_4668 at 5587.382 kb on - strand, within Echvi_4668 at 5587.427 kb on - strand at 5587.472 kb on - strand at 5587.472 kb on - strand at 5587.607 kb on + strand at 5587.614 kb on + strand at 5587.614 kb on + strand at 5587.614 kb on + strand at 5587.614 kb on + strand at 5587.614 kb on + strand at 5587.615 kb on - strand at 5587.615 kb on - strand at 5587.615 kb on - strand at 5587.615 kb on - strand at 5587.616 kb on + strand at 5587.616 kb on + strand at 5587.617 kb on - strand at 5587.617 kb on - strand at 5587.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 5,585,287 + Echvi_4664 0.83 +0.8 5,585,288 - Echvi_4664 0.83 -1.2 5,585,456 + +0.3 5,585,457 - -0.4 5,585,457 - -1.3 5,585,488 + +0.1 5,585,488 + -0.3 5,585,489 - -0.4 5,585,580 + +2.9 5,585,581 - +0.4 5,585,604 + +0.4 5,585,607 + +0.4 5,585,607 + -0.1 5,585,637 + Echvi_4665 0.19 -0.7 5,585,638 - Echvi_4665 0.20 -1.0 5,585,642 + Echvi_4665 0.21 +1.0 5,585,643 - Echvi_4665 0.22 +0.8 5,585,643 - Echvi_4665 0.22 +3.6 5,585,654 + Echvi_4665 0.25 +0.2 5,585,655 - Echvi_4665 0.26 -1.1 5,585,767 + Echvi_4665 0.65 +0.6 5,585,768 - Echvi_4665 0.65 -0.1 5,585,768 - Echvi_4665 0.65 +0.7 5,585,768 - Echvi_4665 0.65 +0.4 5,585,768 - Echvi_4665 0.65 +0.6 5,585,856 + +0.7 5,585,856 + +0.1 5,585,867 - -1.7 5,585,867 - -0.1 5,585,955 + -0.3 5,585,955 + +0.6 5,585,992 + Echvi_4666 0.29 +0.5 5,585,993 - Echvi_4666 0.29 -0.1 5,585,993 - Echvi_4666 0.29 +0.0 5,585,993 - Echvi_4666 0.29 -0.7 5,585,993 - Echvi_4666 0.29 +1.7 5,586,131 + +0.4 5,586,135 + +0.2 5,586,135 + +0.7 5,586,149 + +0.0 5,586,227 + -0.7 5,586,264 + Echvi_4667 0.10 +2.6 5,586,264 + Echvi_4667 0.10 +0.2 5,586,264 + Echvi_4667 0.10 +1.9 5,586,264 + Echvi_4667 0.10 -1.7 5,586,265 - Echvi_4667 0.11 -1.1 5,586,267 - Echvi_4667 0.11 +0.3 5,586,267 - Echvi_4667 0.11 +0.1 5,586,304 + Echvi_4667 0.19 +1.8 5,586,341 - Echvi_4667 0.26 -0.7 5,586,348 - Echvi_4667 0.28 +1.1 5,586,462 + Echvi_4667 0.51 +1.9 5,586,463 - Echvi_4667 0.51 +0.1 5,586,488 - Echvi_4667 0.56 -0.1 5,586,518 + Echvi_4667 0.62 +1.1 5,586,543 - Echvi_4667 0.67 +0.6 5,586,543 - Echvi_4667 0.67 -0.1 5,586,543 - Echvi_4667 0.67 +0.7 5,586,543 - Echvi_4667 0.67 +0.2 5,586,555 - Echvi_4667 0.70 -0.7 5,586,555 - Echvi_4667 0.70 -1.0 5,586,562 + Echvi_4667 0.71 -0.1 5,586,562 + Echvi_4667 0.71 +0.0 5,586,562 + Echvi_4667 0.71 +0.9 5,586,699 + -1.3 5,586,733 - +2.3 5,586,743 + -0.5 5,586,744 - -1.4 5,586,744 - -1.2 5,586,744 - -0.1 5,586,785 + +0.0 5,586,786 - +0.9 5,586,786 - +1.0 5,586,786 - +0.8 5,586,786 - +0.8 5,586,789 + +0.0 5,586,790 - -0.3 5,586,841 + Echvi_4668 0.15 -0.7 5,586,841 + Echvi_4668 0.15 -2.5 5,587,142 + Echvi_4668 0.57 -1.3 5,587,158 + Echvi_4668 0.59 +1.0 5,587,158 + Echvi_4668 0.59 +0.8 5,587,159 - Echvi_4668 0.59 +0.5 5,587,159 - Echvi_4668 0.59 -0.9 5,587,161 - Echvi_4668 0.59 -3.3 5,587,161 - Echvi_4668 0.59 +0.2 5,587,161 - Echvi_4668 0.59 +1.4 5,587,161 - Echvi_4668 0.59 +0.0 5,587,161 - Echvi_4668 0.59 +0.2 5,587,161 - Echvi_4668 0.59 -0.2 5,587,162 + Echvi_4668 0.59 +0.7 5,587,162 + Echvi_4668 0.59 +0.1 5,587,162 + Echvi_4668 0.59 -1.0 5,587,163 - Echvi_4668 0.60 +0.0 5,587,163 - Echvi_4668 0.60 +1.3 5,587,163 - Echvi_4668 0.60 +0.6 5,587,170 - Echvi_4668 0.60 -0.4 5,587,171 + Echvi_4668 0.61 +0.7 5,587,171 + Echvi_4668 0.61 -0.1 5,587,171 + Echvi_4668 0.61 -0.2 5,587,171 + Echvi_4668 0.61 +0.6 5,587,171 + Echvi_4668 0.61 -1.2 5,587,172 - Echvi_4668 0.61 -0.7 5,587,203 - Echvi_4668 0.65 +0.3 5,587,226 - Echvi_4668 0.68 +0.1 5,587,226 - Echvi_4668 0.68 +0.5 5,587,316 - Echvi_4668 0.81 +2.0 5,587,318 + Echvi_4668 0.81 -0.1 5,587,319 - Echvi_4668 0.81 -0.0 5,587,372 + Echvi_4668 0.88 +0.4 5,587,373 - Echvi_4668 0.88 +0.5 5,587,375 + Echvi_4668 0.89 -1.0 5,587,381 + Echvi_4668 0.90 +0.5 5,587,381 + Echvi_4668 0.90 -0.7 5,587,382 - Echvi_4668 0.90 +1.5 5,587,427 - +1.6 5,587,472 - +0.0 5,587,472 - +0.6 5,587,607 + -1.8 5,587,614 + -0.3 5,587,614 + -0.2 5,587,614 + -2.0 5,587,614 + +0.1 5,587,614 + +0.1 5,587,615 - +0.0 5,587,615 - -0.6 5,587,615 - +0.1 5,587,615 - +1.3 5,587,616 + -2.0 5,587,616 + +0.1 5,587,617 - +1.4 5,587,617 - -2.5 5,587,663 + -0.1
Or see this region's nucleotide sequence