Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3961

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3959 and Echvi_3960 are separated by 111 nucleotidesEchvi_3960 and Echvi_3961 are separated by 97 nucleotidesEchvi_3961 and Echvi_3962 are separated by 176 nucleotides Echvi_3959: Echvi_3959 - dihydrodipicolinate synthase, at 4,744,744 to 4,745,604 _3959 Echvi_3960: Echvi_3960 - Histone H1-like protein Hc1., at 4,745,716 to 4,745,892 _3960 Echvi_3961: Echvi_3961 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 4,745,990 to 4,747,240 _3961 Echvi_3962: Echvi_3962 - Acetyl/propionyl-CoA carboxylase, alpha subunit, at 4,747,417 to 4,748,916 _3962 Position (kb) 4745 4746 4747 4748Strain fitness (log2 ratio) -2 -1 0 1at 4745.609 kb on - strandat 4745.620 kb on + strandat 4745.620 kb on + strandat 4745.620 kb on + strandat 4745.620 kb on + strandat 4745.653 kb on + strandat 4745.654 kb on - strandat 4745.655 kb on + strandat 4745.655 kb on + strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.682 kb on - strandat 4745.712 kb on + strandat 4745.712 kb on + strandat 4745.712 kb on + strandat 4745.713 kb on - strandat 4745.714 kb on + strandat 4745.714 kb on + strandat 4745.714 kb on + strandat 4745.715 kb on - strandat 4745.717 kb on + strandat 4745.725 kb on - strandat 4745.766 kb on + strand, within Echvi_3960at 4745.802 kb on + strand, within Echvi_3960at 4745.871 kb on + strand, within Echvi_3960at 4745.959 kb on + strandat 4747.264 kb on - strandat 4747.278 kb on - strandat 4747.361 kb on + strandat 4747.362 kb on - strandat 4747.366 kb on - strandat 4747.373 kb on + strandat 4747.374 kb on - strandat 4747.500 kb on + strandat 4747.501 kb on - strandat 4747.517 kb on - strandat 4747.553 kb on - strandat 4747.567 kb on + strand, within Echvi_3962at 4747.600 kb on + strand, within Echvi_3962at 4747.667 kb on - strand, within Echvi_3962at 4747.667 kb on - strand, within Echvi_3962at 4747.707 kb on - strand, within Echvi_3962at 4747.799 kb on - strand, within Echvi_3962at 4747.833 kb on + strand, within Echvi_3962at 4747.891 kb on - strand, within Echvi_3962at 4748.027 kb on - strand, within Echvi_3962at 4748.046 kb on + strand, within Echvi_3962at 4748.047 kb on - strand, within Echvi_3962at 4748.047 kb on - strand, within Echvi_3962at 4748.114 kb on + strand, within Echvi_3962at 4748.138 kb on + strand, within Echvi_3962at 4748.225 kb on - strand, within Echvi_3962

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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4,745,609 - -1.0
4,745,620 + +0.5
4,745,620 + +1.5
4,745,620 + -0.6
4,745,620 + -0.9
4,745,653 + -0.9
4,745,654 - +0.1
4,745,655 + -0.1
4,745,655 + +0.4
4,745,656 - +1.1
4,745,656 - +0.9
4,745,656 - +0.4
4,745,656 - -0.1
4,745,656 - +0.1
4,745,656 - -1.2
4,745,656 - -1.2
4,745,682 - -1.0
4,745,712 + -0.7
4,745,712 + -1.1
4,745,712 + -0.9
4,745,713 - -1.6
4,745,714 + -0.7
4,745,714 + -1.9
4,745,714 + -0.1
4,745,715 - -1.7
4,745,717 + -1.2
4,745,725 - -0.2
4,745,766 + Echvi_3960 0.28 -2.7
4,745,802 + Echvi_3960 0.49 -1.3
4,745,871 + Echvi_3960 0.88 -0.8
4,745,959 + -0.4
4,747,264 - +0.4
4,747,278 - -0.0
4,747,361 + -0.2
4,747,362 - -0.0
4,747,366 - +0.9
4,747,373 + -1.0
4,747,374 - +1.7
4,747,500 + +0.2
4,747,501 - +1.4
4,747,517 - -0.1
4,747,553 - +0.1
4,747,567 + Echvi_3962 0.10 -0.7
4,747,600 + Echvi_3962 0.12 -0.5
4,747,667 - Echvi_3962 0.17 +0.7
4,747,667 - Echvi_3962 0.17 +1.0
4,747,707 - Echvi_3962 0.19 +0.2
4,747,799 - Echvi_3962 0.25 +0.3
4,747,833 + Echvi_3962 0.28 -0.6
4,747,891 - Echvi_3962 0.32 +0.5
4,748,027 - Echvi_3962 0.41 +0.4
4,748,046 + Echvi_3962 0.42 +1.5
4,748,047 - Echvi_3962 0.42 +1.3
4,748,047 - Echvi_3962 0.42 -0.2
4,748,114 + Echvi_3962 0.46 -1.1
4,748,138 + Echvi_3962 0.48 +0.9
4,748,225 - Echvi_3962 0.54 -1.0

Or see this region's nucleotide sequence