Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3959 and Echvi_3960 are separated by 111 nucleotides Echvi_3960 and Echvi_3961 are separated by 97 nucleotides Echvi_3961 and Echvi_3962 are separated by 176 nucleotides
Echvi_3959: Echvi_3959 - dihydrodipicolinate synthase, at 4,744,744 to 4,745,604
_3959
Echvi_3960: Echvi_3960 - Histone H1-like protein Hc1., at 4,745,716 to 4,745,892
_3960
Echvi_3961: Echvi_3961 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 4,745,990 to 4,747,240
_3961
Echvi_3962: Echvi_3962 - Acetyl/propionyl-CoA carboxylase, alpha subunit, at 4,747,417 to 4,748,916
_3962
Position (kb)
4745
4746
4747
4748 Strain fitness (log2 ratio)
-2
-1
0
1 at 4745.609 kb on - strand at 4745.620 kb on + strand at 4745.620 kb on + strand at 4745.620 kb on + strand at 4745.620 kb on + strand at 4745.653 kb on + strand at 4745.654 kb on - strand at 4745.655 kb on + strand at 4745.655 kb on + strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.656 kb on - strand at 4745.682 kb on - strand at 4745.712 kb on + strand at 4745.712 kb on + strand at 4745.712 kb on + strand at 4745.713 kb on - strand at 4745.714 kb on + strand at 4745.714 kb on + strand at 4745.714 kb on + strand at 4745.715 kb on - strand at 4745.717 kb on + strand at 4745.725 kb on - strand at 4745.766 kb on + strand, within Echvi_3960 at 4745.802 kb on + strand, within Echvi_3960 at 4745.871 kb on + strand, within Echvi_3960 at 4745.959 kb on + strand at 4747.264 kb on - strand at 4747.278 kb on - strand at 4747.361 kb on + strand at 4747.362 kb on - strand at 4747.366 kb on - strand at 4747.373 kb on + strand at 4747.374 kb on - strand at 4747.500 kb on + strand at 4747.501 kb on - strand at 4747.517 kb on - strand at 4747.553 kb on - strand at 4747.567 kb on + strand, within Echvi_3962 at 4747.600 kb on + strand, within Echvi_3962 at 4747.667 kb on - strand, within Echvi_3962 at 4747.667 kb on - strand, within Echvi_3962 at 4747.707 kb on - strand, within Echvi_3962 at 4747.799 kb on - strand, within Echvi_3962 at 4747.833 kb on + strand, within Echvi_3962 at 4747.891 kb on - strand, within Echvi_3962 at 4748.027 kb on - strand, within Echvi_3962 at 4748.046 kb on + strand, within Echvi_3962 at 4748.047 kb on - strand, within Echvi_3962 at 4748.047 kb on - strand, within Echvi_3962 at 4748.114 kb on + strand, within Echvi_3962 at 4748.138 kb on + strand, within Echvi_3962 at 4748.225 kb on - strand, within Echvi_3962
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 4,745,609 - -1.0 4,745,620 + +0.5 4,745,620 + +1.5 4,745,620 + -0.6 4,745,620 + -0.9 4,745,653 + -0.9 4,745,654 - +0.1 4,745,655 + -0.1 4,745,655 + +0.4 4,745,656 - +1.1 4,745,656 - +0.9 4,745,656 - +0.4 4,745,656 - -0.1 4,745,656 - +0.1 4,745,656 - -1.2 4,745,656 - -1.2 4,745,682 - -1.0 4,745,712 + -0.7 4,745,712 + -1.1 4,745,712 + -0.9 4,745,713 - -1.6 4,745,714 + -0.7 4,745,714 + -1.9 4,745,714 + -0.1 4,745,715 - -1.7 4,745,717 + -1.2 4,745,725 - -0.2 4,745,766 + Echvi_3960 0.28 -2.7 4,745,802 + Echvi_3960 0.49 -1.3 4,745,871 + Echvi_3960 0.88 -0.8 4,745,959 + -0.4 4,747,264 - +0.4 4,747,278 - -0.0 4,747,361 + -0.2 4,747,362 - -0.0 4,747,366 - +0.9 4,747,373 + -1.0 4,747,374 - +1.7 4,747,500 + +0.2 4,747,501 - +1.4 4,747,517 - -0.1 4,747,553 - +0.1 4,747,567 + Echvi_3962 0.10 -0.7 4,747,600 + Echvi_3962 0.12 -0.5 4,747,667 - Echvi_3962 0.17 +0.7 4,747,667 - Echvi_3962 0.17 +1.0 4,747,707 - Echvi_3962 0.19 +0.2 4,747,799 - Echvi_3962 0.25 +0.3 4,747,833 + Echvi_3962 0.28 -0.6 4,747,891 - Echvi_3962 0.32 +0.5 4,748,027 - Echvi_3962 0.41 +0.4 4,748,046 + Echvi_3962 0.42 +1.5 4,748,047 - Echvi_3962 0.42 +1.3 4,748,047 - Echvi_3962 0.42 -0.2 4,748,114 + Echvi_3962 0.46 -1.1 4,748,138 + Echvi_3962 0.48 +0.9 4,748,225 - Echvi_3962 0.54 -1.0
Or see this region's nucleotide sequence