Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3108 and Echvi_3109 are separated by 66 nucleotides Echvi_3109 and Echvi_3110 are separated by 195 nucleotides Echvi_3110 and Echvi_3111 are separated by 21 nucleotides
Echvi_3108: Echvi_3108 - Predicted transcriptional regulator, at 3,716,513 to 3,717,475
_3108
Echvi_3109: Echvi_3109 - hypothetical protein, at 3,717,542 to 3,717,757
_3109
Echvi_3110: Echvi_3110 - ABC-type hemin transport system, periplasmic component, at 3,717,953 to 3,718,822
_3110
Echvi_3111: Echvi_3111 - ABC-type Fe3+-siderophore transport system, permease component, at 3,718,844 to 3,719,917
_3111
Position (kb)
3717
3718
3719 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3716.958 kb on + strand, within Echvi_3108 at 3716.959 kb on - strand, within Echvi_3108 at 3716.973 kb on + strand, within Echvi_3108 at 3716.988 kb on - strand, within Echvi_3108 at 3716.988 kb on - strand, within Echvi_3108 at 3716.988 kb on - strand, within Echvi_3108 at 3717.025 kb on + strand, within Echvi_3108 at 3717.026 kb on - strand, within Echvi_3108 at 3717.026 kb on - strand, within Echvi_3108 at 3717.026 kb on - strand, within Echvi_3108 at 3717.027 kb on + strand, within Echvi_3108 at 3717.045 kb on - strand, within Echvi_3108 at 3717.065 kb on + strand, within Echvi_3108 at 3717.065 kb on + strand, within Echvi_3108 at 3717.065 kb on + strand, within Echvi_3108 at 3717.065 kb on + strand, within Echvi_3108 at 3717.066 kb on - strand, within Echvi_3108 at 3717.067 kb on + strand, within Echvi_3108 at 3717.067 kb on + strand, within Echvi_3108 at 3717.077 kb on + strand, within Echvi_3108 at 3717.078 kb on - strand, within Echvi_3108 at 3717.152 kb on + strand, within Echvi_3108 at 3717.153 kb on - strand, within Echvi_3108 at 3717.255 kb on - strand, within Echvi_3108 at 3717.272 kb on + strand, within Echvi_3108 at 3717.272 kb on + strand, within Echvi_3108 at 3717.272 kb on + strand, within Echvi_3108 at 3717.273 kb on - strand, within Echvi_3108 at 3717.273 kb on - strand, within Echvi_3108 at 3717.273 kb on - strand, within Echvi_3108 at 3717.273 kb on - strand, within Echvi_3108 at 3717.279 kb on - strand, within Echvi_3108 at 3717.290 kb on + strand, within Echvi_3108 at 3717.291 kb on - strand, within Echvi_3108 at 3717.328 kb on + strand, within Echvi_3108 at 3717.328 kb on + strand, within Echvi_3108 at 3717.328 kb on + strand, within Echvi_3108 at 3717.328 kb on + strand, within Echvi_3108 at 3717.329 kb on - strand, within Echvi_3108 at 3717.478 kb on + strand at 3717.478 kb on + strand at 3717.479 kb on - strand at 3717.518 kb on + strand at 3717.589 kb on + strand at 3717.593 kb on - strand, within Echvi_3109 at 3717.604 kb on + strand, within Echvi_3109 at 3717.619 kb on - strand, within Echvi_3109 at 3717.664 kb on + strand, within Echvi_3109 at 3717.710 kb on + strand, within Echvi_3109 at 3717.739 kb on + strand at 3717.966 kb on + strand at 3717.966 kb on + strand at 3717.971 kb on + strand at 3717.971 kb on + strand at 3718.003 kb on + strand at 3718.004 kb on - strand at 3718.126 kb on - strand, within Echvi_3110 at 3718.138 kb on + strand, within Echvi_3110 at 3718.144 kb on + strand, within Echvi_3110 at 3718.144 kb on + strand, within Echvi_3110 at 3718.148 kb on + strand, within Echvi_3110 at 3718.148 kb on + strand, within Echvi_3110 at 3718.149 kb on - strand, within Echvi_3110 at 3718.149 kb on - strand, within Echvi_3110 at 3718.149 kb on - strand, within Echvi_3110 at 3718.187 kb on - strand, within Echvi_3110 at 3718.223 kb on - strand, within Echvi_3110 at 3718.254 kb on - strand, within Echvi_3110 at 3718.270 kb on - strand, within Echvi_3110 at 3718.295 kb on - strand, within Echvi_3110 at 3718.348 kb on + strand, within Echvi_3110 at 3718.348 kb on + strand, within Echvi_3110 at 3718.360 kb on - strand, within Echvi_3110 at 3718.477 kb on + strand, within Echvi_3110 at 3718.477 kb on + strand, within Echvi_3110 at 3718.478 kb on - strand, within Echvi_3110 at 3718.631 kb on + strand, within Echvi_3110 at 3718.631 kb on + strand, within Echvi_3110 at 3718.632 kb on - strand, within Echvi_3110 at 3718.632 kb on - strand, within Echvi_3110 at 3718.632 kb on - strand, within Echvi_3110 at 3718.702 kb on + strand, within Echvi_3110 at 3718.741 kb on - strand at 3718.754 kb on + strand at 3718.754 kb on + strand at 3718.754 kb on + strand at 3718.754 kb on + strand at 3718.755 kb on - strand at 3718.755 kb on - strand at 3718.755 kb on - strand at 3718.826 kb on + strand at 3718.826 kb on + strand at 3718.827 kb on - strand at 3718.827 kb on - strand at 3718.831 kb on + strand at 3718.831 kb on + strand at 3718.844 kb on - strand at 3718.844 kb on - strand at 3718.844 kb on - strand at 3718.851 kb on + strand at 3718.895 kb on - strand at 3718.956 kb on - strand, within Echvi_3111 at 3719.059 kb on - strand, within Echvi_3111 at 3719.074 kb on - strand, within Echvi_3111 at 3719.077 kb on - strand, within Echvi_3111 at 3719.165 kb on - strand, within Echvi_3111 at 3719.165 kb on - strand, within Echvi_3111 at 3719.166 kb on + strand, within Echvi_3111 at 3719.166 kb on + strand, within Echvi_3111 at 3719.166 kb on + strand, within Echvi_3111 at 3719.167 kb on - strand, within Echvi_3111 at 3719.167 kb on - strand, within Echvi_3111 at 3719.167 kb on - strand, within Echvi_3111 at 3719.167 kb on - strand, within Echvi_3111 at 3719.207 kb on - strand, within Echvi_3111 at 3719.282 kb on - strand, within Echvi_3111 at 3719.282 kb on - strand, within Echvi_3111 at 3719.295 kb on + strand, within Echvi_3111 at 3719.296 kb on - strand, within Echvi_3111 at 3719.300 kb on - strand, within Echvi_3111 at 3719.313 kb on - strand, within Echvi_3111 at 3719.314 kb on + strand, within Echvi_3111 at 3719.314 kb on + strand, within Echvi_3111 at 3719.314 kb on + strand, within Echvi_3111 at 3719.315 kb on - strand, within Echvi_3111 at 3719.315 kb on - strand, within Echvi_3111 at 3719.326 kb on + strand, within Echvi_3111 at 3719.414 kb on + strand, within Echvi_3111 at 3719.415 kb on - strand, within Echvi_3111 at 3719.417 kb on + strand, within Echvi_3111 at 3719.417 kb on + strand, within Echvi_3111 at 3719.434 kb on + strand, within Echvi_3111 at 3719.435 kb on - strand, within Echvi_3111 at 3719.496 kb on - strand, within Echvi_3111 at 3719.588 kb on + strand, within Echvi_3111 at 3719.589 kb on - strand, within Echvi_3111 at 3719.594 kb on - strand, within Echvi_3111 at 3719.691 kb on + strand, within Echvi_3111
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 3,716,958 + Echvi_3108 0.46 +0.8 3,716,959 - Echvi_3108 0.46 +0.1 3,716,973 + Echvi_3108 0.48 +0.4 3,716,988 - Echvi_3108 0.49 +0.1 3,716,988 - Echvi_3108 0.49 -1.1 3,716,988 - Echvi_3108 0.49 +0.2 3,717,025 + Echvi_3108 0.53 +1.7 3,717,026 - Echvi_3108 0.53 -1.1 3,717,026 - Echvi_3108 0.53 -0.6 3,717,026 - Echvi_3108 0.53 -0.2 3,717,027 + Echvi_3108 0.53 -0.6 3,717,045 - Echvi_3108 0.55 +0.7 3,717,065 + Echvi_3108 0.57 +1.0 3,717,065 + Echvi_3108 0.57 +1.0 3,717,065 + Echvi_3108 0.57 +0.6 3,717,065 + Echvi_3108 0.57 +0.9 3,717,066 - Echvi_3108 0.57 -1.3 3,717,067 + Echvi_3108 0.58 -0.3 3,717,067 + Echvi_3108 0.58 +0.3 3,717,077 + Echvi_3108 0.59 +0.7 3,717,078 - Echvi_3108 0.59 +0.8 3,717,152 + Echvi_3108 0.66 +0.4 3,717,153 - Echvi_3108 0.66 -0.1 3,717,255 - Echvi_3108 0.77 -2.1 3,717,272 + Echvi_3108 0.79 +4.1 3,717,272 + Echvi_3108 0.79 +1.8 3,717,272 + Echvi_3108 0.79 -0.4 3,717,273 - Echvi_3108 0.79 +0.4 3,717,273 - Echvi_3108 0.79 -0.4 3,717,273 - Echvi_3108 0.79 +0.4 3,717,273 - Echvi_3108 0.79 -0.7 3,717,279 - Echvi_3108 0.80 -0.4 3,717,290 + Echvi_3108 0.81 +0.5 3,717,291 - Echvi_3108 0.81 -0.5 3,717,328 + Echvi_3108 0.85 +1.1 3,717,328 + Echvi_3108 0.85 +1.1 3,717,328 + Echvi_3108 0.85 -0.5 3,717,328 + Echvi_3108 0.85 +0.4 3,717,329 - Echvi_3108 0.85 +1.5 3,717,478 + +1.0 3,717,478 + +1.7 3,717,479 - -1.2 3,717,518 + +0.3 3,717,589 + -0.5 3,717,593 - Echvi_3109 0.24 -0.1 3,717,604 + Echvi_3109 0.29 -0.7 3,717,619 - Echvi_3109 0.36 -0.4 3,717,664 + Echvi_3109 0.56 -0.5 3,717,710 + Echvi_3109 0.78 -0.4 3,717,739 + -0.5 3,717,966 + -0.8 3,717,966 + -0.4 3,717,971 + +1.9 3,717,971 + +0.1 3,718,003 + -0.1 3,718,004 - -1.9 3,718,126 - Echvi_3110 0.20 -1.5 3,718,138 + Echvi_3110 0.21 +1.5 3,718,144 + Echvi_3110 0.22 +1.2 3,718,144 + Echvi_3110 0.22 +2.3 3,718,148 + Echvi_3110 0.22 +0.1 3,718,148 + Echvi_3110 0.22 +1.1 3,718,149 - Echvi_3110 0.23 -0.5 3,718,149 - Echvi_3110 0.23 -0.2 3,718,149 - Echvi_3110 0.23 -0.3 3,718,187 - Echvi_3110 0.27 +0.3 3,718,223 - Echvi_3110 0.31 +1.1 3,718,254 - Echvi_3110 0.35 +1.1 3,718,270 - Echvi_3110 0.36 +0.2 3,718,295 - Echvi_3110 0.39 +0.2 3,718,348 + Echvi_3110 0.45 +1.5 3,718,348 + Echvi_3110 0.45 +0.9 3,718,360 - Echvi_3110 0.47 -1.9 3,718,477 + Echvi_3110 0.60 +1.9 3,718,477 + Echvi_3110 0.60 +0.9 3,718,478 - Echvi_3110 0.60 -0.2 3,718,631 + Echvi_3110 0.78 +1.5 3,718,631 + Echvi_3110 0.78 +1.1 3,718,632 - Echvi_3110 0.78 -0.2 3,718,632 - Echvi_3110 0.78 +0.2 3,718,632 - Echvi_3110 0.78 +1.5 3,718,702 + Echvi_3110 0.86 +2.6 3,718,741 - +0.6 3,718,754 + +0.9 3,718,754 + +1.8 3,718,754 + +1.3 3,718,754 + +2.2 3,718,755 - +0.3 3,718,755 - -0.5 3,718,755 - +0.4 3,718,826 + +1.5 3,718,826 + +0.9 3,718,827 - +0.4 3,718,827 - +0.4 3,718,831 + -0.1 3,718,831 + +2.0 3,718,844 - -0.1 3,718,844 - -1.8 3,718,844 - +0.1 3,718,851 + +1.7 3,718,895 - -0.8 3,718,956 - Echvi_3111 0.10 -0.7 3,719,059 - Echvi_3111 0.20 -0.2 3,719,074 - Echvi_3111 0.21 -0.0 3,719,077 - Echvi_3111 0.22 -0.5 3,719,165 - Echvi_3111 0.30 -1.1 3,719,165 - Echvi_3111 0.30 -1.4 3,719,166 + Echvi_3111 0.30 +0.9 3,719,166 + Echvi_3111 0.30 -0.0 3,719,166 + Echvi_3111 0.30 +1.0 3,719,167 - Echvi_3111 0.30 -0.4 3,719,167 - Echvi_3111 0.30 -1.1 3,719,167 - Echvi_3111 0.30 +0.7 3,719,167 - Echvi_3111 0.30 -2.1 3,719,207 - Echvi_3111 0.34 +0.4 3,719,282 - Echvi_3111 0.41 -0.2 3,719,282 - Echvi_3111 0.41 +0.1 3,719,295 + Echvi_3111 0.42 +1.1 3,719,296 - Echvi_3111 0.42 -0.9 3,719,300 - Echvi_3111 0.42 -0.4 3,719,313 - Echvi_3111 0.44 +0.1 3,719,314 + Echvi_3111 0.44 +1.5 3,719,314 + Echvi_3111 0.44 +1.1 3,719,314 + Echvi_3111 0.44 +2.0 3,719,315 - Echvi_3111 0.44 +0.1 3,719,315 - Echvi_3111 0.44 +0.2 3,719,326 + Echvi_3111 0.45 +0.7 3,719,414 + Echvi_3111 0.53 +0.9 3,719,415 - Echvi_3111 0.53 -1.8 3,719,417 + Echvi_3111 0.53 +2.5 3,719,417 + Echvi_3111 0.53 +1.3 3,719,434 + Echvi_3111 0.55 +1.1 3,719,435 - Echvi_3111 0.55 -0.5 3,719,496 - Echvi_3111 0.61 -0.6 3,719,588 + Echvi_3111 0.69 +2.1 3,719,589 - Echvi_3111 0.69 +0.9 3,719,594 - Echvi_3111 0.70 -0.5 3,719,691 + Echvi_3111 0.79 +1.8
Or see this region's nucleotide sequence