Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2225 and Echvi_2226 are separated by 210 nucleotides Echvi_2226 and Echvi_2227 are separated by 397 nucleotides Echvi_2227 and Echvi_2228 are separated by 307 nucleotides
Echvi_2225: Echvi_2225 - Transposase DDE domain./Transposase domain (DUF772)., at 2,648,306 to 2,649,658
_2225
Echvi_2226: Echvi_2226 - hypothetical protein, at 2,649,869 to 2,650,105
_2226
Echvi_2227: Echvi_2227 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 2,650,503 to 2,652,392
_2227
Echvi_2228: Echvi_2228 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 2,652,700 to 2,653,362
_2228
Position (kb)
2650
2651
2652
2653 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2649.764 kb on + strand at 2649.764 kb on + strand at 2649.783 kb on + strand at 2649.804 kb on + strand at 2649.809 kb on + strand at 2649.809 kb on + strand at 2649.870 kb on + strand at 2649.874 kb on + strand at 2649.875 kb on - strand at 2649.945 kb on - strand, within Echvi_2226 at 2649.948 kb on - strand, within Echvi_2226 at 2649.950 kb on + strand, within Echvi_2226 at 2649.963 kb on - strand, within Echvi_2226 at 2649.963 kb on - strand, within Echvi_2226 at 2649.963 kb on - strand, within Echvi_2226 at 2649.995 kb on + strand, within Echvi_2226 at 2650.018 kb on + strand, within Echvi_2226 at 2650.018 kb on + strand, within Echvi_2226 at 2650.018 kb on + strand, within Echvi_2226 at 2650.019 kb on - strand, within Echvi_2226 at 2650.120 kb on - strand at 2650.199 kb on - strand at 2650.292 kb on - strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.317 kb on + strand at 2650.318 kb on - strand at 2650.318 kb on - strand at 2650.319 kb on + strand at 2650.399 kb on + strand at 2650.400 kb on - strand at 2650.453 kb on + strand at 2650.454 kb on - strand at 2650.504 kb on + strand at 2650.688 kb on - strand at 2650.690 kb on + strand at 2650.690 kb on + strand at 2650.690 kb on + strand at 2650.690 kb on + strand at 2650.694 kb on - strand, within Echvi_2227 at 2650.694 kb on - strand, within Echvi_2227 at 2650.705 kb on - strand, within Echvi_2227 at 2650.710 kb on + strand, within Echvi_2227 at 2650.710 kb on + strand, within Echvi_2227 at 2650.711 kb on - strand, within Echvi_2227 at 2650.713 kb on + strand, within Echvi_2227 at 2650.714 kb on - strand, within Echvi_2227 at 2650.730 kb on + strand, within Echvi_2227 at 2650.730 kb on + strand, within Echvi_2227 at 2650.769 kb on + strand, within Echvi_2227 at 2650.832 kb on + strand, within Echvi_2227 at 2650.832 kb on + strand, within Echvi_2227 at 2650.913 kb on - strand, within Echvi_2227 at 2650.913 kb on - strand, within Echvi_2227 at 2650.965 kb on + strand, within Echvi_2227 at 2650.965 kb on + strand, within Echvi_2227 at 2650.965 kb on + strand, within Echvi_2227 at 2650.982 kb on - strand, within Echvi_2227 at 2651.021 kb on + strand, within Echvi_2227 at 2651.093 kb on - strand, within Echvi_2227 at 2651.093 kb on - strand, within Echvi_2227 at 2651.218 kb on + strand, within Echvi_2227 at 2651.219 kb on - strand, within Echvi_2227 at 2651.260 kb on + strand, within Echvi_2227 at 2651.261 kb on - strand, within Echvi_2227 at 2651.331 kb on + strand, within Echvi_2227 at 2651.476 kb on - strand, within Echvi_2227 at 2651.514 kb on - strand, within Echvi_2227 at 2651.585 kb on + strand, within Echvi_2227 at 2651.662 kb on + strand, within Echvi_2227 at 2651.669 kb on - strand, within Echvi_2227 at 2651.682 kb on + strand, within Echvi_2227 at 2651.683 kb on - strand, within Echvi_2227 at 2651.683 kb on - strand, within Echvi_2227 at 2651.683 kb on - strand, within Echvi_2227 at 2651.789 kb on + strand, within Echvi_2227 at 2651.790 kb on - strand, within Echvi_2227 at 2651.790 kb on - strand, within Echvi_2227 at 2651.790 kb on - strand, within Echvi_2227 at 2651.817 kb on - strand, within Echvi_2227 at 2651.817 kb on - strand, within Echvi_2227 at 2651.924 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2651.963 kb on - strand, within Echvi_2227 at 2652.143 kb on + strand, within Echvi_2227 at 2652.193 kb on - strand, within Echvi_2227 at 2652.193 kb on - strand, within Echvi_2227 at 2652.226 kb on + strand at 2652.323 kb on + strand at 2652.324 kb on - strand at 2652.388 kb on - strand at 2652.397 kb on - strand at 2652.451 kb on + strand at 2652.465 kb on + strand at 2652.465 kb on + strand at 2652.506 kb on + strand at 2652.528 kb on + strand at 2652.529 kb on - strand at 2652.541 kb on - strand at 2652.545 kb on - strand at 2652.586 kb on - strand at 2652.633 kb on + strand at 2652.634 kb on - strand at 2652.650 kb on + strand at 2652.650 kb on + strand at 2652.685 kb on - strand at 2652.750 kb on - strand at 2652.750 kb on - strand at 2652.757 kb on - strand at 2652.803 kb on + strand, within Echvi_2228 at 2652.804 kb on - strand, within Echvi_2228 at 2652.864 kb on - strand, within Echvi_2228 at 2652.894 kb on + strand, within Echvi_2228 at 2652.895 kb on - strand, within Echvi_2228 at 2652.895 kb on - strand, within Echvi_2228 at 2652.940 kb on + strand, within Echvi_2228 at 2652.941 kb on - strand, within Echvi_2228 at 2652.953 kb on - strand, within Echvi_2228 at 2652.954 kb on + strand, within Echvi_2228 at 2652.954 kb on + strand, within Echvi_2228 at 2652.954 kb on + strand, within Echvi_2228 at 2652.955 kb on - strand, within Echvi_2228 at 2652.955 kb on - strand, within Echvi_2228 at 2653.094 kb on - strand, within Echvi_2228 at 2653.124 kb on + strand, within Echvi_2228 at 2653.124 kb on + strand, within Echvi_2228 at 2653.125 kb on - strand, within Echvi_2228 at 2653.125 kb on - strand, within Echvi_2228 at 2653.125 kb on - strand, within Echvi_2228 at 2653.130 kb on + strand, within Echvi_2228 at 2653.131 kb on - strand, within Echvi_2228 at 2653.131 kb on - strand, within Echvi_2228 at 2653.155 kb on + strand, within Echvi_2228 at 2653.156 kb on - strand, within Echvi_2228 at 2653.197 kb on + strand, within Echvi_2228 at 2653.300 kb on + strand at 2653.301 kb on - strand at 2653.321 kb on - strand at 2653.331 kb on - strand at 2653.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 2,649,764 + +0.6 2,649,764 + +1.1 2,649,783 + -0.1 2,649,804 + +0.1 2,649,809 + -0.9 2,649,809 + -0.0 2,649,870 + -0.4 2,649,874 + -0.0 2,649,875 - -0.2 2,649,945 - Echvi_2226 0.32 +0.5 2,649,948 - Echvi_2226 0.33 -0.5 2,649,950 + Echvi_2226 0.34 -0.0 2,649,963 - Echvi_2226 0.40 +1.8 2,649,963 - Echvi_2226 0.40 +0.6 2,649,963 - Echvi_2226 0.40 -1.5 2,649,995 + Echvi_2226 0.53 -0.1 2,650,018 + Echvi_2226 0.63 +1.0 2,650,018 + Echvi_2226 0.63 +0.2 2,650,018 + Echvi_2226 0.63 +1.6 2,650,019 - Echvi_2226 0.63 +1.3 2,650,120 - -0.0 2,650,199 - -0.0 2,650,292 - +1.2 2,650,317 + +0.1 2,650,317 + +0.6 2,650,317 + -0.2 2,650,317 + -0.5 2,650,317 + -0.8 2,650,318 - -1.5 2,650,318 - -0.4 2,650,319 + +1.0 2,650,399 + -0.4 2,650,400 - +0.0 2,650,453 + -0.9 2,650,454 - -0.3 2,650,504 + -0.5 2,650,688 - +2.6 2,650,690 + -0.2 2,650,690 + -0.2 2,650,690 + +0.8 2,650,690 + -1.3 2,650,694 - Echvi_2227 0.10 -0.1 2,650,694 - Echvi_2227 0.10 +0.2 2,650,705 - Echvi_2227 0.11 +2.1 2,650,710 + Echvi_2227 0.11 -0.1 2,650,710 + Echvi_2227 0.11 -0.3 2,650,711 - Echvi_2227 0.11 -0.7 2,650,713 + Echvi_2227 0.11 +0.4 2,650,714 - Echvi_2227 0.11 +0.1 2,650,730 + Echvi_2227 0.12 +0.4 2,650,730 + Echvi_2227 0.12 -0.2 2,650,769 + Echvi_2227 0.14 -0.3 2,650,832 + Echvi_2227 0.17 -0.3 2,650,832 + Echvi_2227 0.17 +0.0 2,650,913 - Echvi_2227 0.22 -0.3 2,650,913 - Echvi_2227 0.22 +0.1 2,650,965 + Echvi_2227 0.24 -0.4 2,650,965 + Echvi_2227 0.24 +0.8 2,650,965 + Echvi_2227 0.24 +2.1 2,650,982 - Echvi_2227 0.25 -0.7 2,651,021 + Echvi_2227 0.27 -0.4 2,651,093 - Echvi_2227 0.31 +0.1 2,651,093 - Echvi_2227 0.31 +0.7 2,651,218 + Echvi_2227 0.38 +0.3 2,651,219 - Echvi_2227 0.38 -0.3 2,651,260 + Echvi_2227 0.40 -0.6 2,651,261 - Echvi_2227 0.40 -0.8 2,651,331 + Echvi_2227 0.44 -0.2 2,651,476 - Echvi_2227 0.51 +0.8 2,651,514 - Echvi_2227 0.53 +1.9 2,651,585 + Echvi_2227 0.57 +0.6 2,651,662 + Echvi_2227 0.61 -0.6 2,651,669 - Echvi_2227 0.62 +0.7 2,651,682 + Echvi_2227 0.62 -1.2 2,651,683 - Echvi_2227 0.62 -0.6 2,651,683 - Echvi_2227 0.62 +0.7 2,651,683 - Echvi_2227 0.62 -0.0 2,651,789 + Echvi_2227 0.68 +0.4 2,651,790 - Echvi_2227 0.68 -0.8 2,651,790 - Echvi_2227 0.68 +0.3 2,651,790 - Echvi_2227 0.68 +1.4 2,651,817 - Echvi_2227 0.70 -0.7 2,651,817 - Echvi_2227 0.70 -0.8 2,651,924 - Echvi_2227 0.75 -1.2 2,651,963 - Echvi_2227 0.77 +2.6 2,651,963 - Echvi_2227 0.77 -0.0 2,651,963 - Echvi_2227 0.77 -0.2 2,651,963 - Echvi_2227 0.77 -0.4 2,652,143 + Echvi_2227 0.87 +1.1 2,652,193 - Echvi_2227 0.89 -0.4 2,652,193 - Echvi_2227 0.89 +0.6 2,652,226 + +0.3 2,652,323 + +0.6 2,652,324 - +3.1 2,652,388 - -0.2 2,652,397 - -0.2 2,652,451 + +0.2 2,652,465 + +0.2 2,652,465 + -0.4 2,652,506 + -0.3 2,652,528 + -0.9 2,652,529 - -0.3 2,652,541 - -0.3 2,652,545 - -0.8 2,652,586 - +1.0 2,652,633 + -0.7 2,652,634 - -0.0 2,652,650 + -0.4 2,652,650 + -0.7 2,652,685 - -1.4 2,652,750 - -0.8 2,652,750 - -1.3 2,652,757 - +0.2 2,652,803 + Echvi_2228 0.16 +0.2 2,652,804 - Echvi_2228 0.16 -0.1 2,652,864 - Echvi_2228 0.25 +0.8 2,652,894 + Echvi_2228 0.29 +1.3 2,652,895 - Echvi_2228 0.29 -0.5 2,652,895 - Echvi_2228 0.29 +0.4 2,652,940 + Echvi_2228 0.36 -0.2 2,652,941 - Echvi_2228 0.36 +0.2 2,652,953 - Echvi_2228 0.38 -0.0 2,652,954 + Echvi_2228 0.38 +1.2 2,652,954 + Echvi_2228 0.38 +0.8 2,652,954 + Echvi_2228 0.38 -0.1 2,652,955 - Echvi_2228 0.38 -0.9 2,652,955 - Echvi_2228 0.38 -0.6 2,653,094 - Echvi_2228 0.59 +0.3 2,653,124 + Echvi_2228 0.64 -0.4 2,653,124 + Echvi_2228 0.64 -0.3 2,653,125 - Echvi_2228 0.64 -0.6 2,653,125 - Echvi_2228 0.64 -0.5 2,653,125 - Echvi_2228 0.64 +0.6 2,653,130 + Echvi_2228 0.65 +0.6 2,653,131 - Echvi_2228 0.65 -0.6 2,653,131 - Echvi_2228 0.65 -0.2 2,653,155 + Echvi_2228 0.69 +0.7 2,653,156 - Echvi_2228 0.69 +1.6 2,653,197 + Echvi_2228 0.75 +0.3 2,653,300 + +0.6 2,653,301 - -0.0 2,653,321 - +0.6 2,653,331 - +0.0 2,653,345 - +1.6
Or see this region's nucleotide sequence