Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1374 and Echvi_1375 are separated by 461 nucleotides Echvi_1375 and Echvi_1376 are separated by 72 nucleotides
Echvi_1374: Echvi_1374 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,581,636 to 1,582,979
_1374
Echvi_1375: Echvi_1375 - hypothetical protein, at 1,583,441 to 1,583,764
_1375
Echvi_1376: Echvi_1376 - Thiol-disulfide isomerase and thioredoxins, at 1,583,837 to 1,585,381
_1376
Position (kb)
1583
1584 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1582.456 kb on - strand, within Echvi_1374 at 1582.472 kb on + strand, within Echvi_1374 at 1582.473 kb on - strand, within Echvi_1374 at 1582.493 kb on - strand, within Echvi_1374 at 1582.508 kb on + strand, within Echvi_1374 at 1582.509 kb on - strand, within Echvi_1374 at 1582.538 kb on - strand, within Echvi_1374 at 1582.550 kb on + strand, within Echvi_1374 at 1582.585 kb on - strand, within Echvi_1374 at 1582.585 kb on - strand, within Echvi_1374 at 1582.585 kb on - strand, within Echvi_1374 at 1582.592 kb on + strand, within Echvi_1374 at 1582.655 kb on + strand, within Echvi_1374 at 1582.655 kb on + strand, within Echvi_1374 at 1582.655 kb on + strand, within Echvi_1374 at 1582.656 kb on - strand, within Echvi_1374 at 1582.684 kb on - strand, within Echvi_1374 at 1582.740 kb on + strand, within Echvi_1374 at 1582.740 kb on + strand, within Echvi_1374 at 1582.741 kb on - strand, within Echvi_1374 at 1582.741 kb on - strand, within Echvi_1374 at 1582.741 kb on - strand, within Echvi_1374 at 1582.744 kb on + strand, within Echvi_1374 at 1582.744 kb on + strand, within Echvi_1374 at 1582.744 kb on + strand, within Echvi_1374 at 1582.745 kb on - strand, within Echvi_1374 at 1582.745 kb on - strand, within Echvi_1374 at 1582.745 kb on - strand, within Echvi_1374 at 1582.761 kb on + strand, within Echvi_1374 at 1582.764 kb on + strand, within Echvi_1374 at 1582.768 kb on + strand, within Echvi_1374 at 1582.769 kb on - strand, within Echvi_1374 at 1582.769 kb on - strand, within Echvi_1374 at 1582.769 kb on - strand, within Echvi_1374 at 1582.775 kb on - strand, within Echvi_1374 at 1582.837 kb on - strand, within Echvi_1374 at 1582.878 kb on + strand at 1582.879 kb on - strand at 1582.879 kb on - strand at 1582.882 kb on - strand at 1582.907 kb on + strand at 1582.908 kb on - strand at 1582.979 kb on + strand at 1582.979 kb on + strand at 1582.980 kb on - strand at 1582.980 kb on - strand at 1582.980 kb on - strand at 1582.983 kb on - strand at 1582.983 kb on - strand at 1582.983 kb on - strand at 1582.983 kb on - strand at 1582.983 kb on - strand at 1583.021 kb on + strand at 1583.021 kb on + strand at 1583.066 kb on - strand at 1583.089 kb on + strand at 1583.090 kb on - strand at 1583.090 kb on - strand at 1583.094 kb on - strand at 1583.094 kb on - strand at 1583.148 kb on + strand at 1583.149 kb on - strand at 1583.250 kb on + strand at 1583.261 kb on - strand at 1583.318 kb on - strand at 1583.434 kb on + strand at 1583.464 kb on + strand at 1583.500 kb on - strand, within Echvi_1375 at 1583.584 kb on + strand, within Echvi_1375 at 1583.585 kb on - strand, within Echvi_1375 at 1583.585 kb on - strand, within Echvi_1375 at 1583.615 kb on + strand, within Echvi_1375 at 1583.616 kb on - strand, within Echvi_1375 at 1583.618 kb on + strand, within Echvi_1375 at 1583.618 kb on + strand, within Echvi_1375 at 1583.618 kb on + strand, within Echvi_1375 at 1583.618 kb on + strand, within Echvi_1375 at 1583.618 kb on + strand, within Echvi_1375 at 1583.618 kb on + strand, within Echvi_1375 at 1583.619 kb on - strand, within Echvi_1375 at 1583.619 kb on - strand, within Echvi_1375 at 1583.619 kb on - strand, within Echvi_1375 at 1583.619 kb on - strand, within Echvi_1375 at 1583.621 kb on - strand, within Echvi_1375 at 1583.621 kb on - strand, within Echvi_1375 at 1583.621 kb on - strand, within Echvi_1375 at 1583.621 kb on - strand, within Echvi_1375 at 1583.621 kb on - strand, within Echvi_1375 at 1583.702 kb on - strand, within Echvi_1375 at 1583.719 kb on + strand, within Echvi_1375 at 1583.719 kb on + strand, within Echvi_1375 at 1583.720 kb on - strand, within Echvi_1375 at 1583.763 kb on - strand at 1583.779 kb on - strand at 1583.797 kb on - strand at 1583.827 kb on + strand at 1583.827 kb on + strand at 1583.828 kb on - strand at 1583.830 kb on + strand at 1583.830 kb on + strand at 1583.830 kb on + strand at 1583.831 kb on - strand at 1583.839 kb on - strand at 1583.852 kb on + strand at 1583.852 kb on + strand at 1583.872 kb on + strand at 1583.873 kb on - strand at 1583.873 kb on - strand at 1583.907 kb on + strand at 1583.907 kb on + strand at 1583.907 kb on + strand at 1583.907 kb on + strand at 1583.907 kb on + strand at 1583.908 kb on - strand at 1583.908 kb on - strand at 1583.908 kb on - strand at 1583.908 kb on - strand at 1583.908 kb on - strand at 1583.908 kb on - strand at 1583.936 kb on - strand at 1583.938 kb on + strand at 1583.938 kb on + strand at 1583.938 kb on + strand at 1583.938 kb on + strand at 1583.938 kb on + strand at 1583.938 kb on + strand at 1583.939 kb on - strand at 1583.939 kb on - strand at 1583.968 kb on - strand at 1583.992 kb on + strand, within Echvi_1376 at 1583.993 kb on - strand, within Echvi_1376 at 1584.007 kb on + strand, within Echvi_1376 at 1584.020 kb on - strand, within Echvi_1376 at 1584.034 kb on + strand, within Echvi_1376 at 1584.034 kb on + strand, within Echvi_1376 at 1584.034 kb on + strand, within Echvi_1376 at 1584.036 kb on + strand, within Echvi_1376 at 1584.036 kb on + strand, within Echvi_1376 at 1584.036 kb on + strand, within Echvi_1376 at 1584.036 kb on + strand, within Echvi_1376 at 1584.089 kb on + strand, within Echvi_1376 at 1584.097 kb on + strand, within Echvi_1376 at 1584.117 kb on + strand, within Echvi_1376 at 1584.118 kb on - strand, within Echvi_1376 at 1584.118 kb on - strand, within Echvi_1376 at 1584.123 kb on + strand, within Echvi_1376 at 1584.167 kb on - strand, within Echvi_1376 at 1584.167 kb on - strand, within Echvi_1376 at 1584.167 kb on - strand, within Echvi_1376 at 1584.207 kb on - strand, within Echvi_1376 at 1584.211 kb on + strand, within Echvi_1376 at 1584.211 kb on + strand, within Echvi_1376 at 1584.212 kb on - strand, within Echvi_1376 at 1584.300 kb on - strand, within Echvi_1376 at 1584.313 kb on + strand, within Echvi_1376 at 1584.313 kb on + strand, within Echvi_1376 at 1584.332 kb on - strand, within Echvi_1376 at 1584.344 kb on - strand, within Echvi_1376 at 1584.391 kb on + strand, within Echvi_1376 at 1584.391 kb on + strand, within Echvi_1376 at 1584.391 kb on + strand, within Echvi_1376 at 1584.391 kb on + strand, within Echvi_1376 at 1584.391 kb on + strand, within Echvi_1376 at 1584.391 kb on + strand, within Echvi_1376 at 1584.392 kb on - strand, within Echvi_1376 at 1584.392 kb on - strand, within Echvi_1376 at 1584.392 kb on - strand, within Echvi_1376 at 1584.392 kb on - strand, within Echvi_1376 at 1584.392 kb on - strand, within Echvi_1376 at 1584.396 kb on - strand, within Echvi_1376 at 1584.396 kb on - strand, within Echvi_1376 at 1584.401 kb on + strand, within Echvi_1376 at 1584.402 kb on - strand, within Echvi_1376 at 1584.407 kb on + strand, within Echvi_1376 at 1584.408 kb on - strand, within Echvi_1376 at 1584.422 kb on + strand, within Echvi_1376 at 1584.423 kb on - strand, within Echvi_1376 at 1584.446 kb on + strand, within Echvi_1376 at 1584.493 kb on - strand, within Echvi_1376 at 1584.496 kb on + strand, within Echvi_1376 at 1584.518 kb on + strand, within Echvi_1376 at 1584.531 kb on + strand, within Echvi_1376 at 1584.532 kb on - strand, within Echvi_1376 at 1584.535 kb on - strand, within Echvi_1376 at 1584.549 kb on - strand, within Echvi_1376 at 1584.658 kb on + strand, within Echvi_1376 at 1584.659 kb on - strand at 1584.659 kb on - strand, within Echvi_1376 at 1584.661 kb on - strand, within Echvi_1376 at 1584.664 kb on - strand, within Echvi_1376 at 1584.664 kb on - strand, within Echvi_1376 at 1584.668 kb on + strand, within Echvi_1376 at 1584.669 kb on - strand, within Echvi_1376 at 1584.698 kb on + strand, within Echvi_1376 at 1584.698 kb on + strand, within Echvi_1376 at 1584.698 kb on + strand, within Echvi_1376 at 1584.699 kb on - strand, within Echvi_1376 at 1584.706 kb on - strand, within Echvi_1376 at 1584.732 kb on + strand, within Echvi_1376 at 1584.757 kb on + strand, within Echvi_1376 at 1584.757 kb on + strand, within Echvi_1376
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 1,582,456 - Echvi_1374 0.61 -0.4 1,582,472 + Echvi_1374 0.62 +0.9 1,582,473 - Echvi_1374 0.62 -0.1 1,582,493 - Echvi_1374 0.64 -2.2 1,582,508 + Echvi_1374 0.65 -0.2 1,582,509 - Echvi_1374 0.65 +1.1 1,582,538 - Echvi_1374 0.67 +0.1 1,582,550 + Echvi_1374 0.68 -1.1 1,582,585 - Echvi_1374 0.71 -0.4 1,582,585 - Echvi_1374 0.71 -0.6 1,582,585 - Echvi_1374 0.71 -0.7 1,582,592 + Echvi_1374 0.71 +0.6 1,582,655 + Echvi_1374 0.76 +0.5 1,582,655 + Echvi_1374 0.76 +0.1 1,582,655 + Echvi_1374 0.76 +0.7 1,582,656 - Echvi_1374 0.76 -0.3 1,582,684 - Echvi_1374 0.78 +0.5 1,582,740 + Echvi_1374 0.82 -0.2 1,582,740 + Echvi_1374 0.82 -1.1 1,582,741 - Echvi_1374 0.82 +0.5 1,582,741 - Echvi_1374 0.82 -1.0 1,582,741 - Echvi_1374 0.82 -0.7 1,582,744 + Echvi_1374 0.82 +0.9 1,582,744 + Echvi_1374 0.82 +1.1 1,582,744 + Echvi_1374 0.82 -0.5 1,582,745 - Echvi_1374 0.83 +0.7 1,582,745 - Echvi_1374 0.83 +0.9 1,582,745 - Echvi_1374 0.83 +0.8 1,582,761 + Echvi_1374 0.84 -1.0 1,582,764 + Echvi_1374 0.84 -1.1 1,582,768 + Echvi_1374 0.84 +0.8 1,582,769 - Echvi_1374 0.84 +1.1 1,582,769 - Echvi_1374 0.84 -0.2 1,582,769 - Echvi_1374 0.84 +0.1 1,582,775 - Echvi_1374 0.85 -1.6 1,582,837 - Echvi_1374 0.89 -0.3 1,582,878 + -0.8 1,582,879 - -2.5 1,582,879 - -0.1 1,582,882 - +0.8 1,582,907 + -0.1 1,582,908 - +0.3 1,582,979 + -0.5 1,582,979 + -0.5 1,582,980 - +0.7 1,582,980 - +1.8 1,582,980 - -0.1 1,582,983 - +1.0 1,582,983 - +1.4 1,582,983 - +0.7 1,582,983 - +1.0 1,582,983 - +0.1 1,583,021 + -0.3 1,583,021 + -0.4 1,583,066 - -0.5 1,583,089 + -0.3 1,583,090 - -1.0 1,583,090 - -1.5 1,583,094 - +1.7 1,583,094 - -0.2 1,583,148 + -0.5 1,583,149 - -1.1 1,583,250 + +0.2 1,583,261 - -0.7 1,583,318 - +0.2 1,583,434 + -1.1 1,583,464 + +1.6 1,583,500 - Echvi_1375 0.18 -1.4 1,583,584 + Echvi_1375 0.44 +1.8 1,583,585 - Echvi_1375 0.44 -0.7 1,583,585 - Echvi_1375 0.44 -0.9 1,583,615 + Echvi_1375 0.54 +0.9 1,583,616 - Echvi_1375 0.54 -0.4 1,583,618 + Echvi_1375 0.55 +1.4 1,583,618 + Echvi_1375 0.55 -0.1 1,583,618 + Echvi_1375 0.55 -0.0 1,583,618 + Echvi_1375 0.55 -0.6 1,583,618 + Echvi_1375 0.55 -0.6 1,583,618 + Echvi_1375 0.55 -0.6 1,583,619 - Echvi_1375 0.55 -0.4 1,583,619 - Echvi_1375 0.55 +0.6 1,583,619 - Echvi_1375 0.55 +0.1 1,583,619 - Echvi_1375 0.55 -0.1 1,583,621 - Echvi_1375 0.56 +0.5 1,583,621 - Echvi_1375 0.56 +0.1 1,583,621 - Echvi_1375 0.56 -0.9 1,583,621 - Echvi_1375 0.56 -1.4 1,583,621 - Echvi_1375 0.56 -0.6 1,583,702 - Echvi_1375 0.81 -1.0 1,583,719 + Echvi_1375 0.86 -2.4 1,583,719 + Echvi_1375 0.86 +0.5 1,583,720 - Echvi_1375 0.86 +0.1 1,583,763 - -0.9 1,583,779 - +0.6 1,583,797 - -1.4 1,583,827 + +0.5 1,583,827 + -0.3 1,583,828 - +0.9 1,583,830 + +0.7 1,583,830 + +0.0 1,583,830 + -0.3 1,583,831 - +0.2 1,583,839 - +0.1 1,583,852 + -0.7 1,583,852 + -1.6 1,583,872 + -0.7 1,583,873 - -1.6 1,583,873 - +1.0 1,583,907 + -0.6 1,583,907 + +0.4 1,583,907 + +0.1 1,583,907 + -1.0 1,583,907 + +1.1 1,583,908 - +0.3 1,583,908 - -1.0 1,583,908 - +0.4 1,583,908 - +1.0 1,583,908 - +0.4 1,583,908 - +0.1 1,583,936 - -0.2 1,583,938 + -0.1 1,583,938 + -0.8 1,583,938 + +0.2 1,583,938 + +0.4 1,583,938 + -1.8 1,583,938 + -0.4 1,583,939 - +0.0 1,583,939 - -0.2 1,583,968 - -1.3 1,583,992 + Echvi_1376 0.10 +1.3 1,583,993 - Echvi_1376 0.10 -1.6 1,584,007 + Echvi_1376 0.11 -0.7 1,584,020 - Echvi_1376 0.12 +1.7 1,584,034 + Echvi_1376 0.13 -2.0 1,584,034 + Echvi_1376 0.13 +1.4 1,584,034 + Echvi_1376 0.13 -0.8 1,584,036 + Echvi_1376 0.13 +0.0 1,584,036 + Echvi_1376 0.13 +0.6 1,584,036 + Echvi_1376 0.13 +0.2 1,584,036 + Echvi_1376 0.13 -0.5 1,584,089 + Echvi_1376 0.16 -0.8 1,584,097 + Echvi_1376 0.17 -0.1 1,584,117 + Echvi_1376 0.18 +1.2 1,584,118 - Echvi_1376 0.18 +0.6 1,584,118 - Echvi_1376 0.18 +0.4 1,584,123 + Echvi_1376 0.19 -0.2 1,584,167 - Echvi_1376 0.21 +1.3 1,584,167 - Echvi_1376 0.21 -0.1 1,584,167 - Echvi_1376 0.21 -1.4 1,584,207 - Echvi_1376 0.24 +2.2 1,584,211 + Echvi_1376 0.24 -0.1 1,584,211 + Echvi_1376 0.24 +0.4 1,584,212 - Echvi_1376 0.24 -0.2 1,584,300 - Echvi_1376 0.30 +0.1 1,584,313 + Echvi_1376 0.31 -1.8 1,584,313 + Echvi_1376 0.31 -3.5 1,584,332 - Echvi_1376 0.32 -0.6 1,584,344 - Echvi_1376 0.33 -1.0 1,584,391 + Echvi_1376 0.36 -0.4 1,584,391 + Echvi_1376 0.36 -0.7 1,584,391 + Echvi_1376 0.36 +0.2 1,584,391 + Echvi_1376 0.36 -0.5 1,584,391 + Echvi_1376 0.36 -1.4 1,584,391 + Echvi_1376 0.36 +0.1 1,584,392 - Echvi_1376 0.36 -0.0 1,584,392 - Echvi_1376 0.36 -0.1 1,584,392 - Echvi_1376 0.36 +0.7 1,584,392 - Echvi_1376 0.36 +0.7 1,584,392 - Echvi_1376 0.36 -0.4 1,584,396 - Echvi_1376 0.36 +0.1 1,584,396 - Echvi_1376 0.36 -0.2 1,584,401 + Echvi_1376 0.37 +1.1 1,584,402 - Echvi_1376 0.37 +1.2 1,584,407 + Echvi_1376 0.37 -0.6 1,584,408 - Echvi_1376 0.37 -2.5 1,584,422 + Echvi_1376 0.38 +0.1 1,584,423 - Echvi_1376 0.38 -1.1 1,584,446 + Echvi_1376 0.39 -0.9 1,584,493 - Echvi_1376 0.42 +0.8 1,584,496 + Echvi_1376 0.43 -1.0 1,584,518 + Echvi_1376 0.44 -1.3 1,584,531 + Echvi_1376 0.45 -1.8 1,584,532 - Echvi_1376 0.45 -0.1 1,584,535 - Echvi_1376 0.45 +0.5 1,584,549 - Echvi_1376 0.46 +1.4 1,584,658 + Echvi_1376 0.53 -0.7 1,584,659 - +1.3 1,584,659 - Echvi_1376 0.53 -0.1 1,584,661 - Echvi_1376 0.53 -0.2 1,584,664 - Echvi_1376 0.54 +0.1 1,584,664 - Echvi_1376 0.54 -0.3 1,584,668 + Echvi_1376 0.54 -0.8 1,584,669 - Echvi_1376 0.54 -0.9 1,584,698 + Echvi_1376 0.56 -0.8 1,584,698 + Echvi_1376 0.56 -0.0 1,584,698 + Echvi_1376 0.56 -1.2 1,584,699 - Echvi_1376 0.56 -0.0 1,584,706 - Echvi_1376 0.56 +0.8 1,584,732 + Echvi_1376 0.58 -0.9 1,584,757 + Echvi_1376 0.60 +0.2 1,584,757 + Echvi_1376 0.60 +1.7
Or see this region's nucleotide sequence