Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0874

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0873 and Echvi_0874 are separated by 219 nucleotidesEchvi_0874 and Echvi_0875 are separated by 47 nucleotidesEchvi_0875 and Echvi_0876 are separated by 0 nucleotides Echvi_0873: Echvi_0873 - Predicted carboxypeptidase, at 996,455 to 997,948 _0873 Echvi_0874: Echvi_0874 - Uncharacterized protein conserved in bacteria, at 998,168 to 998,764 _0874 Echvi_0875: Echvi_0875 - hypothetical protein, at 998,812 to 999,375 _0875 Echvi_0876: Echvi_0876 - ABC-type transport system involved in cytochrome c biogenesis, permease component, at 999,376 to 1,002,489 _0876 Position (kb) 998 999Strain fitness (log2 ratio) -2 -1 0 1 2at 997.226 kb on + strand, within Echvi_0873at 997.227 kb on - strand, within Echvi_0873at 997.328 kb on - strand, within Echvi_0873at 997.328 kb on - strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.334 kb on + strand, within Echvi_0873at 997.335 kb on - strand, within Echvi_0873at 997.398 kb on - strand, within Echvi_0873at 997.421 kb on + strand, within Echvi_0873at 997.421 kb on + strand, within Echvi_0873at 997.447 kb on + strand, within Echvi_0873at 997.447 kb on + strand, within Echvi_0873at 997.447 kb on + strand, within Echvi_0873at 997.448 kb on - strandat 997.448 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.557 kb on - strand, within Echvi_0873at 997.601 kb on + strand, within Echvi_0873at 997.604 kb on + strand, within Echvi_0873at 997.604 kb on + strand, within Echvi_0873at 997.605 kb on - strand, within Echvi_0873at 997.743 kb on + strand, within Echvi_0873at 997.744 kb on - strand, within Echvi_0873at 997.788 kb on + strand, within Echvi_0873at 997.984 kb on - strandat 997.984 kb on - strandat 998.074 kb on + strandat 998.112 kb on + strandat 998.160 kb on - strandat 998.222 kb on + strandat 998.223 kb on - strandat 998.297 kb on + strand, within Echvi_0874at 998.297 kb on + strand, within Echvi_0874at 998.298 kb on - strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.337 kb on + strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.338 kb on - strand, within Echvi_0874at 998.371 kb on - strand, within Echvi_0874at 998.504 kb on + strand, within Echvi_0874at 998.506 kb on + strand, within Echvi_0874at 998.507 kb on - strand, within Echvi_0874at 998.511 kb on - strand, within Echvi_0874at 998.663 kb on + strand, within Echvi_0874at 998.763 kb on - strandat 998.855 kb on + strandat 998.855 kb on + strandat 998.855 kb on + strandat 998.856 kb on - strandat 998.856 kb on - strandat 998.887 kb on + strand, within Echvi_0875at 998.931 kb on + strand, within Echvi_0875at 998.939 kb on + strand, within Echvi_0875at 999.032 kb on - strand, within Echvi_0875at 999.079 kb on - strand, within Echvi_0875at 999.104 kb on + strand, within Echvi_0875at 999.111 kb on + strand, within Echvi_0875at 999.222 kb on + strand, within Echvi_0875at 999.243 kb on + strand, within Echvi_0875at 999.244 kb on - strand, within Echvi_0875at 999.244 kb on - strand, within Echvi_0875at 999.319 kb on - strandat 999.334 kb on + strandat 999.338 kb on - strandat 999.365 kb on + strandat 999.374 kb on - strandat 999.377 kb on + strandat 999.390 kb on - strandat 999.425 kb on + strandat 999.425 kb on + strandat 999.426 kb on - strandat 999.428 kb on - strandat 999.470 kb on + strandat 999.509 kb on + strandat 999.510 kb on - strandat 999.533 kb on + strandat 999.533 kb on + strandat 999.534 kb on - strandat 999.534 kb on - strandat 999.593 kb on + strandat 999.647 kb on + strandat 999.647 kb on + strandat 999.647 kb on + strandat 999.648 kb on - strandat 999.649 kb on + strandat 999.649 kb on + strandat 999.650 kb on - strandat 999.725 kb on - strand, within Echvi_0876at 999.725 kb on - strand, within Echvi_0876

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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997,226 + Echvi_0873 0.52 -0.4
997,227 - Echvi_0873 0.52 -0.3
997,328 - Echvi_0873 0.58 -0.0
997,328 - Echvi_0873 0.58 -0.4
997,334 + Echvi_0873 0.59 +0.4
997,334 + Echvi_0873 0.59 +2.2
997,334 + Echvi_0873 0.59 +0.2
997,334 + Echvi_0873 0.59 -0.3
997,335 - Echvi_0873 0.59 -0.1
997,398 - Echvi_0873 0.63 +1.0
997,421 + Echvi_0873 0.65 -1.3
997,421 + Echvi_0873 0.65 -0.1
997,447 + Echvi_0873 0.66 -1.7
997,447 + Echvi_0873 0.66 -0.4
997,447 + Echvi_0873 0.66 +0.1
997,448 - +2.7
997,448 - Echvi_0873 0.66 -0.3
997,557 - Echvi_0873 0.74 -0.2
997,557 - Echvi_0873 0.74 +0.6
997,557 - Echvi_0873 0.74 +0.9
997,557 - Echvi_0873 0.74 +0.2
997,557 - Echvi_0873 0.74 -0.6
997,557 - Echvi_0873 0.74 +0.5
997,601 + Echvi_0873 0.77 +1.3
997,604 + Echvi_0873 0.77 -0.3
997,604 + Echvi_0873 0.77 -0.5
997,605 - Echvi_0873 0.77 +0.1
997,743 + Echvi_0873 0.86 +0.0
997,744 - Echvi_0873 0.86 +1.9
997,788 + Echvi_0873 0.89 +1.2
997,984 - -0.3
997,984 - +0.2
998,074 + +0.3
998,112 + -1.3
998,160 - -0.6
998,222 + -0.0
998,223 - +0.5
998,297 + Echvi_0874 0.22 -0.1
998,297 + Echvi_0874 0.22 -2.4
998,298 - Echvi_0874 0.22 -1.7
998,337 + Echvi_0874 0.28 +1.2
998,337 + Echvi_0874 0.28 -0.3
998,337 + Echvi_0874 0.28 +0.2
998,338 - Echvi_0874 0.28 -0.2
998,338 - Echvi_0874 0.28 -0.9
998,338 - Echvi_0874 0.28 -0.0
998,371 - Echvi_0874 0.34 -1.9
998,504 + Echvi_0874 0.56 -0.5
998,506 + Echvi_0874 0.57 -0.8
998,507 - Echvi_0874 0.57 -0.7
998,511 - Echvi_0874 0.57 +1.0
998,663 + Echvi_0874 0.83 -0.7
998,763 - +0.3
998,855 + -0.3
998,855 + +0.2
998,855 + +2.1
998,856 - +0.6
998,856 - -0.9
998,887 + Echvi_0875 0.13 +1.4
998,931 + Echvi_0875 0.21 -0.4
998,939 + Echvi_0875 0.23 +0.8
999,032 - Echvi_0875 0.39 -1.0
999,079 - Echvi_0875 0.47 +0.1
999,104 + Echvi_0875 0.52 +1.0
999,111 + Echvi_0875 0.53 +0.7
999,222 + Echvi_0875 0.73 -0.0
999,243 + Echvi_0875 0.76 -0.1
999,244 - Echvi_0875 0.77 -0.3
999,244 - Echvi_0875 0.77 -0.3
999,319 - -0.0
999,334 + -0.9
999,338 - -0.6
999,365 + +0.7
999,374 - +0.2
999,377 + +0.1
999,390 - +0.6
999,425 + +1.3
999,425 + -0.2
999,426 - +1.4
999,428 - +2.7
999,470 + +0.0
999,509 + +1.7
999,510 - -0.5
999,533 + +1.1
999,533 + -0.1
999,534 - -0.5
999,534 - +1.1
999,593 + -0.1
999,647 + +0.3
999,647 + -0.8
999,647 + -1.1
999,648 - -1.1
999,649 + +0.8
999,649 + +0.2
999,650 - -1.5
999,725 - Echvi_0876 0.11 -0.4
999,725 - Echvi_0876 0.11 +0.3

Or see this region's nucleotide sequence