Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0871

Experiment: m.b. Vancomycin 0.06 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0870 and Echvi_0871 are separated by 168 nucleotidesEchvi_0871 and Echvi_0872 are separated by 96 nucleotides Echvi_0870: Echvi_0870 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase, at 993,104 to 993,850 _0870 Echvi_0871: Echvi_0871 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 994,019 to 995,077 _0871 Echvi_0872: Echvi_0872 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 995,174 to 996,184 _0872 Position (kb) 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 993.046 kb on + strandat 993.058 kb on + strandat 993.058 kb on + strandat 993.058 kb on + strandat 993.059 kb on - strandat 993.059 kb on - strandat 993.060 kb on + strandat 993.060 kb on + strandat 993.060 kb on + strandat 993.060 kb on + strandat 993.061 kb on - strandat 993.061 kb on - strandat 993.061 kb on - strandat 993.067 kb on - strandat 993.081 kb on + strandat 993.124 kb on + strandat 993.124 kb on + strandat 993.124 kb on + strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.127 kb on - strandat 993.133 kb on + strandat 993.133 kb on + strandat 993.172 kb on + strandat 993.298 kb on + strand, within Echvi_0870at 993.299 kb on - strand, within Echvi_0870at 993.299 kb on - strand, within Echvi_0870at 993.299 kb on - strand, within Echvi_0870at 993.304 kb on - strand, within Echvi_0870at 993.304 kb on - strand, within Echvi_0870at 993.304 kb on - strand, within Echvi_0870at 993.307 kb on + strand, within Echvi_0870at 993.321 kb on - strand, within Echvi_0870at 993.322 kb on + strand, within Echvi_0870at 993.323 kb on - strand, within Echvi_0870at 993.337 kb on - strand, within Echvi_0870at 993.484 kb on + strand, within Echvi_0870at 993.485 kb on - strand, within Echvi_0870at 993.527 kb on - strand, within Echvi_0870at 993.560 kb on + strand, within Echvi_0870at 993.560 kb on + strand, within Echvi_0870at 993.561 kb on - strand, within Echvi_0870at 993.561 kb on - strand, within Echvi_0870at 993.561 kb on - strand, within Echvi_0870at 993.594 kb on + strand, within Echvi_0870at 993.594 kb on + strand, within Echvi_0870at 993.595 kb on - strand, within Echvi_0870at 993.600 kb on - strand, within Echvi_0870at 993.604 kb on - strand, within Echvi_0870at 993.659 kb on + strand, within Echvi_0870at 993.659 kb on + strand, within Echvi_0870at 993.768 kb on + strand, within Echvi_0870at 993.782 kb on + strandat 993.785 kb on + strandat 993.785 kb on + strandat 993.845 kb on - strandat 993.845 kb on - strandat 993.896 kb on - strandat 993.928 kb on - strandat 993.945 kb on - strandat 993.974 kb on + strandat 993.982 kb on - strandat 993.999 kb on + strandat 994.007 kb on - strandat 994.009 kb on - strandat 994.020 kb on + strandat 994.020 kb on + strandat 994.020 kb on + strandat 994.021 kb on - strandat 994.071 kb on + strandat 994.072 kb on - strandat 994.148 kb on - strand, within Echvi_0871at 994.261 kb on + strand, within Echvi_0871at 994.261 kb on + strand, within Echvi_0871at 994.274 kb on + strand, within Echvi_0871at 994.275 kb on - strand, within Echvi_0871at 994.294 kb on - strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.485 kb on + strand, within Echvi_0871at 994.494 kb on + strand, within Echvi_0871at 994.494 kb on + strand, within Echvi_0871at 994.495 kb on - strand, within Echvi_0871at 994.537 kb on + strand, within Echvi_0871at 994.545 kb on + strand, within Echvi_0871at 994.545 kb on + strand, within Echvi_0871at 994.546 kb on - strand, within Echvi_0871at 994.548 kb on + strand, within Echvi_0871at 994.575 kb on - strand, within Echvi_0871at 994.606 kb on + strand, within Echvi_0871at 994.606 kb on + strand, within Echvi_0871at 994.761 kb on - strand, within Echvi_0871at 994.779 kb on + strand, within Echvi_0871at 994.779 kb on + strand, within Echvi_0871at 994.881 kb on + strand, within Echvi_0871at 994.882 kb on - strand, within Echvi_0871at 994.903 kb on + strand, within Echvi_0871at 994.903 kb on + strand, within Echvi_0871at 994.955 kb on - strand, within Echvi_0871at 994.993 kb on - strandat 995.039 kb on - strandat 995.041 kb on + strandat 995.041 kb on + strandat 995.041 kb on + strandat 995.042 kb on - strandat 995.042 kb on - strandat 995.042 kb on - strandat 995.109 kb on - strandat 995.111 kb on - strandat 995.111 kb on - strandat 995.231 kb on + strandat 995.231 kb on + strandat 995.231 kb on + strandat 995.232 kb on - strandat 995.232 kb on - strandat 995.289 kb on + strand, within Echvi_0872at 995.348 kb on - strand, within Echvi_0872at 995.348 kb on - strand, within Echvi_0872at 995.354 kb on + strand, within Echvi_0872at 995.354 kb on + strand, within Echvi_0872at 995.354 kb on + strand, within Echvi_0872at 995.355 kb on - strand, within Echvi_0872at 995.388 kb on + strand, within Echvi_0872at 995.388 kb on + strand, within Echvi_0872at 995.388 kb on + strand, within Echvi_0872at 995.489 kb on - strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.518 kb on + strand, within Echvi_0872at 995.529 kb on + strand, within Echvi_0872at 995.600 kb on + strand, within Echvi_0872at 995.601 kb on - strand, within Echvi_0872at 995.613 kb on + strand, within Echvi_0872at 995.613 kb on + strand, within Echvi_0872at 995.614 kb on - strand, within Echvi_0872at 995.618 kb on - strand, within Echvi_0872at 995.655 kb on - strand, within Echvi_0872at 995.674 kb on + strand, within Echvi_0872at 995.674 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.731 kb on + strand, within Echvi_0872at 995.732 kb on - strandat 995.733 kb on + strand, within Echvi_0872at 995.839 kb on - strand, within Echvi_0872at 995.845 kb on - strand, within Echvi_0872at 995.845 kb on - strand, within Echvi_0872at 995.869 kb on + strand, within Echvi_0872at 995.927 kb on + strand, within Echvi_0872at 995.928 kb on - strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.935 kb on + strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.936 kb on - strand, within Echvi_0872at 995.962 kb on + strand, within Echvi_0872at 996.036 kb on + strand, within Echvi_0872at 996.037 kb on - strand, within Echvi_0872at 996.052 kb on + strand, within Echvi_0872at 996.069 kb on + strand, within Echvi_0872

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
remove
993,046 + +1.0
993,058 + -0.1
993,058 + +1.2
993,058 + -0.1
993,059 - -1.2
993,059 - -0.6
993,060 + -1.5
993,060 + +1.7
993,060 + +0.4
993,060 + +0.8
993,061 - -0.1
993,061 - -0.4
993,061 - -0.2
993,067 - -1.0
993,081 + +1.5
993,124 + +1.7
993,124 + -0.9
993,124 + +0.8
993,125 - -1.3
993,125 - -0.3
993,125 - -1.4
993,125 - -0.3
993,125 - -0.6
993,127 - -2.3
993,133 + -1.7
993,133 + -0.4
993,172 + -0.5
993,298 + Echvi_0870 0.26 -0.5
993,299 - Echvi_0870 0.26 -1.1
993,299 - Echvi_0870 0.26 -0.0
993,299 - Echvi_0870 0.26 +0.3
993,304 - Echvi_0870 0.27 -1.0
993,304 - Echvi_0870 0.27 -1.1
993,304 - Echvi_0870 0.27 +0.1
993,307 + Echvi_0870 0.27 -0.4
993,321 - Echvi_0870 0.29 -0.9
993,322 + Echvi_0870 0.29 +1.0
993,323 - Echvi_0870 0.29 -0.3
993,337 - Echvi_0870 0.31 -0.2
993,484 + Echvi_0870 0.51 -0.6
993,485 - Echvi_0870 0.51 -1.0
993,527 - Echvi_0870 0.57 -0.3
993,560 + Echvi_0870 0.61 +0.7
993,560 + Echvi_0870 0.61 +0.7
993,561 - Echvi_0870 0.61 +1.7
993,561 - Echvi_0870 0.61 +0.7
993,561 - Echvi_0870 0.61 -1.6
993,594 + Echvi_0870 0.66 -0.9
993,594 + Echvi_0870 0.66 -0.1
993,595 - Echvi_0870 0.66 -0.2
993,600 - Echvi_0870 0.66 -0.0
993,604 - Echvi_0870 0.67 -0.5
993,659 + Echvi_0870 0.74 -0.1
993,659 + Echvi_0870 0.74 -0.8
993,768 + Echvi_0870 0.89 +0.1
993,782 + +0.1
993,785 + +1.3
993,785 + -1.0
993,845 - -0.1
993,845 - -0.1
993,896 - -0.9
993,928 - -1.3
993,945 - -0.4
993,974 + -1.9
993,982 - +0.1
993,999 + -0.3
994,007 - -0.8
994,009 - +0.0
994,020 + +0.3
994,020 + +0.1
994,020 + +0.4
994,021 - +0.7
994,071 + -0.0
994,072 - +0.1
994,148 - Echvi_0871 0.12 -0.0
994,261 + Echvi_0871 0.23 +1.6
994,261 + Echvi_0871 0.23 -1.0
994,274 + Echvi_0871 0.24 -1.6
994,275 - Echvi_0871 0.24 -0.8
994,294 - Echvi_0871 0.26 +0.3
994,400 + Echvi_0871 0.36 +1.0
994,400 + Echvi_0871 0.36 +1.7
994,400 + Echvi_0871 0.36 +0.1
994,485 + Echvi_0871 0.44 +0.4
994,494 + Echvi_0871 0.45 +1.5
994,494 + Echvi_0871 0.45 -0.7
994,495 - Echvi_0871 0.45 +1.3
994,537 + Echvi_0871 0.49 +0.2
994,545 + Echvi_0871 0.50 -1.4
994,545 + Echvi_0871 0.50 +1.2
994,546 - Echvi_0871 0.50 +0.2
994,548 + Echvi_0871 0.50 +0.9
994,575 - Echvi_0871 0.53 +0.2
994,606 + Echvi_0871 0.55 +0.9
994,606 + Echvi_0871 0.55 -0.0
994,761 - Echvi_0871 0.70 +1.9
994,779 + Echvi_0871 0.72 +0.1
994,779 + Echvi_0871 0.72 +0.1
994,881 + Echvi_0871 0.81 +0.1
994,882 - Echvi_0871 0.81 +0.3
994,903 + Echvi_0871 0.83 +0.5
994,903 + Echvi_0871 0.83 +0.2
994,955 - Echvi_0871 0.88 -0.0
994,993 - -0.1
995,039 - +0.1
995,041 + -0.7
995,041 + -1.3
995,041 + +0.0
995,042 - +0.6
995,042 - +1.9
995,042 - -0.4
995,109 - -0.1
995,111 - -2.9
995,111 - +1.7
995,231 + +0.6
995,231 + -0.7
995,231 + +0.7
995,232 - -0.6
995,232 - -0.1
995,289 + Echvi_0872 0.11 -2.8
995,348 - Echvi_0872 0.17 -0.1
995,348 - Echvi_0872 0.17 +0.7
995,354 + Echvi_0872 0.18 -0.9
995,354 + Echvi_0872 0.18 +0.5
995,354 + Echvi_0872 0.18 -0.3
995,355 - Echvi_0872 0.18 -0.9
995,388 + Echvi_0872 0.21 +0.1
995,388 + Echvi_0872 0.21 -0.8
995,388 + Echvi_0872 0.21 +1.7
995,489 - Echvi_0872 0.31 -0.1
995,518 + Echvi_0872 0.34 +0.9
995,518 + Echvi_0872 0.34 +1.0
995,518 + Echvi_0872 0.34 +1.2
995,529 + Echvi_0872 0.35 -0.2
995,600 + Echvi_0872 0.42 -1.0
995,601 - Echvi_0872 0.42 -1.0
995,613 + Echvi_0872 0.43 -0.6
995,613 + Echvi_0872 0.43 +0.4
995,614 - Echvi_0872 0.44 +0.5
995,618 - Echvi_0872 0.44 -0.1
995,655 - Echvi_0872 0.48 +0.5
995,674 + Echvi_0872 0.49 -1.1
995,674 + Echvi_0872 0.49 +0.5
995,731 + Echvi_0872 0.55 -1.7
995,731 + Echvi_0872 0.55 -0.6
995,731 + Echvi_0872 0.55 +0.5
995,731 + Echvi_0872 0.55 +0.0
995,732 - -0.6
995,733 + Echvi_0872 0.55 +0.5
995,839 - Echvi_0872 0.66 -0.4
995,845 - Echvi_0872 0.66 +1.2
995,845 - Echvi_0872 0.66 +0.5
995,869 + Echvi_0872 0.69 +1.1
995,927 + Echvi_0872 0.74 +0.6
995,928 - Echvi_0872 0.75 -1.6
995,935 + Echvi_0872 0.75 +0.1
995,935 + Echvi_0872 0.75 -0.3
995,935 + Echvi_0872 0.75 -0.2
995,935 + Echvi_0872 0.75 +0.5
995,936 - Echvi_0872 0.75 -0.7
995,936 - Echvi_0872 0.75 -0.3
995,936 - Echvi_0872 0.75 +0.6
995,962 + Echvi_0872 0.78 -0.1
996,036 + Echvi_0872 0.85 -1.5
996,037 - Echvi_0872 0.85 +0.2
996,052 + Echvi_0872 0.87 -2.1
996,069 + Echvi_0872 0.89 -0.9

Or see this region's nucleotide sequence