Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0859 and Echvi_0860 are separated by 41 nucleotides Echvi_0860 and Echvi_0861 are separated by 27 nucleotides Echvi_0861 and Echvi_0862 are separated by 150 nucleotides Echvi_0862 and Echvi_0863 are separated by 184 nucleotides
Echvi_0859: Echvi_0859 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 981,093 to 982,169
_0859
Echvi_0860: Echvi_0860 - hypothetical protein, at 982,211 to 982,309
_0860
Echvi_0861: Echvi_0861 - hypothetical protein, at 982,337 to 982,486
_0861
Echvi_0862: Echvi_0862 - Glutamate dehydrogenase/leucine dehydrogenase, at 982,637 to 983,863
_0862
Echvi_0863: Echvi_0863 - Na+/H+ antiporter NhaD and related arsenite permeases, at 984,048 to 985,574
_0863
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 981.686 kb on - strand, within Echvi_0859 at 981.690 kb on + strand, within Echvi_0859 at 981.690 kb on + strand, within Echvi_0859 at 981.691 kb on - strand, within Echvi_0859 at 981.716 kb on + strand, within Echvi_0859 at 981.727 kb on + strand, within Echvi_0859 at 981.768 kb on + strand, within Echvi_0859 at 981.768 kb on + strand, within Echvi_0859 at 981.768 kb on + strand, within Echvi_0859 at 981.769 kb on - strand, within Echvi_0859 at 981.832 kb on + strand, within Echvi_0859 at 981.885 kb on + strand, within Echvi_0859 at 981.885 kb on + strand, within Echvi_0859 at 981.908 kb on - strand, within Echvi_0859 at 981.935 kb on + strand, within Echvi_0859 at 981.966 kb on + strand, within Echvi_0859 at 982.094 kb on + strand at 982.094 kb on + strand at 982.094 kb on + strand at 982.094 kb on + strand at 982.098 kb on - strand at 982.106 kb on - strand at 982.106 kb on - strand at 982.109 kb on + strand at 982.110 kb on - strand at 982.110 kb on - strand at 982.142 kb on + strand at 982.142 kb on + strand at 982.158 kb on + strand at 982.158 kb on + strand at 982.158 kb on + strand at 982.159 kb on - strand at 982.159 kb on - strand at 982.167 kb on + strand at 982.175 kb on + strand at 982.176 kb on - strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.178 kb on + strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.179 kb on - strand at 982.180 kb on + strand at 982.181 kb on - strand at 982.187 kb on - strand at 982.212 kb on + strand at 982.213 kb on - strand at 982.277 kb on + strand, within Echvi_0860 at 982.277 kb on + strand, within Echvi_0860 at 982.277 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.286 kb on + strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.287 kb on - strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.288 kb on + strand, within Echvi_0860 at 982.289 kb on - strand, within Echvi_0860 at 982.289 kb on - strand, within Echvi_0860 at 982.305 kb on - strand at 982.309 kb on + strand at 982.309 kb on + strand at 982.309 kb on + strand at 982.351 kb on + strand at 982.352 kb on - strand, within Echvi_0861 at 982.353 kb on + strand, within Echvi_0861 at 982.354 kb on - strand, within Echvi_0861 at 982.361 kb on + strand, within Echvi_0861 at 982.361 kb on + strand, within Echvi_0861 at 982.361 kb on + strand, within Echvi_0861 at 982.376 kb on - strand, within Echvi_0861 at 982.376 kb on - strand, within Echvi_0861 at 982.420 kb on + strand, within Echvi_0861 at 982.421 kb on - strand, within Echvi_0861 at 982.430 kb on - strand, within Echvi_0861 at 982.475 kb on + strand at 982.476 kb on - strand at 982.519 kb on + strand at 982.520 kb on - strand at 982.520 kb on - strand at 982.531 kb on + strand at 982.632 kb on - strand at 982.632 kb on - strand at 982.637 kb on - strand at 982.637 kb on - strand at 982.637 kb on - strand at 982.777 kb on + strand, within Echvi_0862 at 982.777 kb on + strand, within Echvi_0862 at 982.864 kb on + strand, within Echvi_0862 at 982.944 kb on + strand, within Echvi_0862 at 982.956 kb on - strand, within Echvi_0862 at 982.956 kb on - strand, within Echvi_0862 at 982.956 kb on - strand, within Echvi_0862 at 982.958 kb on + strand, within Echvi_0862 at 982.958 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 982.963 kb on + strand, within Echvi_0862 at 983.021 kb on + strand, within Echvi_0862 at 983.022 kb on - strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.052 kb on + strand, within Echvi_0862 at 983.053 kb on - strand, within Echvi_0862 at 983.128 kb on - strand, within Echvi_0862 at 983.144 kb on + strand, within Echvi_0862 at 983.145 kb on - strand, within Echvi_0862 at 983.145 kb on - strand, within Echvi_0862 at 983.169 kb on - strand, within Echvi_0862 at 983.170 kb on + strand, within Echvi_0862 at 983.170 kb on + strand, within Echvi_0862 at 983.182 kb on + strand, within Echvi_0862 at 983.214 kb on + strand, within Echvi_0862 at 983.215 kb on - strand, within Echvi_0862 at 983.225 kb on + strand, within Echvi_0862 at 983.226 kb on - strand, within Echvi_0862 at 983.226 kb on - strand, within Echvi_0862 at 983.247 kb on + strand, within Echvi_0862 at 983.286 kb on + strand, within Echvi_0862 at 983.286 kb on + strand, within Echvi_0862 at 983.286 kb on + strand, within Echvi_0862 at 983.361 kb on + strand, within Echvi_0862 at 983.361 kb on + strand, within Echvi_0862 at 983.361 kb on + strand, within Echvi_0862 at 983.362 kb on - strand, within Echvi_0862 at 983.385 kb on + strand, within Echvi_0862 at 983.385 kb on + strand, within Echvi_0862 at 983.385 kb on + strand, within Echvi_0862 at 983.386 kb on - strand, within Echvi_0862 at 983.386 kb on - strand, within Echvi_0862 at 983.446 kb on - strand, within Echvi_0862 at 983.485 kb on - strand, within Echvi_0862 at 983.497 kb on - strand, within Echvi_0862 at 983.593 kb on - strand, within Echvi_0862 at 983.730 kb on + strand, within Echvi_0862 at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.799 kb on + strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.800 kb on - strand at 983.859 kb on + strand at 983.859 kb on + strand at 983.861 kb on + strand at 983.861 kb on + strand at 983.862 kb on - strand at 983.862 kb on - strand at 983.862 kb on - strand at 983.875 kb on + strand at 983.876 kb on - strand at 983.922 kb on + strand at 983.958 kb on + strand at 983.963 kb on + strand at 983.973 kb on + strand at 983.973 kb on + strand at 983.985 kb on + strand at 984.020 kb on + strand at 984.030 kb on + strand at 984.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 981,686 - Echvi_0859 0.55 +0.4 981,690 + Echvi_0859 0.55 +0.2 981,690 + Echvi_0859 0.55 +0.0 981,691 - Echvi_0859 0.56 +0.4 981,716 + Echvi_0859 0.58 -1.5 981,727 + Echvi_0859 0.59 -2.0 981,768 + Echvi_0859 0.63 -0.3 981,768 + Echvi_0859 0.63 -0.8 981,768 + Echvi_0859 0.63 -0.6 981,769 - Echvi_0859 0.63 -1.0 981,832 + Echvi_0859 0.69 +0.1 981,885 + Echvi_0859 0.74 -1.1 981,885 + Echvi_0859 0.74 +0.1 981,908 - Echvi_0859 0.76 -1.7 981,935 + Echvi_0859 0.78 -0.4 981,966 + Echvi_0859 0.81 -1.4 982,094 + -2.4 982,094 + -1.3 982,094 + -1.6 982,094 + -1.3 982,098 - +0.7 982,106 - -0.4 982,106 - +2.0 982,109 + +0.0 982,110 - -2.1 982,110 - +0.7 982,142 + +0.7 982,142 + -1.5 982,158 + -0.6 982,158 + +1.1 982,158 + -1.6 982,159 - -0.1 982,159 - -0.5 982,167 + +1.2 982,175 + -1.1 982,176 - -1.5 982,178 + -0.0 982,178 + +0.6 982,178 + -1.0 982,178 + -0.9 982,178 + -0.7 982,178 + -1.7 982,178 + -0.1 982,178 + -0.3 982,178 + -1.6 982,179 - -0.5 982,179 - -1.6 982,179 - -0.5 982,179 - +0.5 982,179 - -0.5 982,179 - -0.2 982,179 - +0.6 982,180 + +0.5 982,181 - +0.9 982,187 - +0.4 982,212 + -1.0 982,213 - +0.1 982,277 + Echvi_0860 0.67 -0.6 982,277 + Echvi_0860 0.67 -1.0 982,277 + Echvi_0860 0.67 -0.8 982,286 + Echvi_0860 0.76 -1.0 982,286 + Echvi_0860 0.76 -1.5 982,286 + Echvi_0860 0.76 -0.9 982,286 + Echvi_0860 0.76 -1.2 982,287 - Echvi_0860 0.77 +1.8 982,287 - Echvi_0860 0.77 +0.1 982,287 - Echvi_0860 0.77 -1.3 982,287 - Echvi_0860 0.77 -0.2 982,288 + Echvi_0860 0.78 -1.5 982,288 + Echvi_0860 0.78 -0.6 982,288 + Echvi_0860 0.78 -1.6 982,288 + Echvi_0860 0.78 -1.7 982,289 - Echvi_0860 0.79 +0.1 982,289 - Echvi_0860 0.79 +0.7 982,305 - -0.4 982,309 + -1.1 982,309 + -1.8 982,309 + -0.9 982,351 + +0.3 982,352 - Echvi_0861 0.10 +0.2 982,353 + Echvi_0861 0.11 +0.3 982,354 - Echvi_0861 0.11 +1.2 982,361 + Echvi_0861 0.16 -1.3 982,361 + Echvi_0861 0.16 +0.6 982,361 + Echvi_0861 0.16 -0.5 982,376 - Echvi_0861 0.26 +1.3 982,376 - Echvi_0861 0.26 +0.9 982,420 + Echvi_0861 0.55 -0.9 982,421 - Echvi_0861 0.56 +0.5 982,430 - Echvi_0861 0.62 +0.2 982,475 + -1.1 982,476 - +1.7 982,519 + -1.1 982,520 - -0.5 982,520 - +0.2 982,531 + -0.7 982,632 - -0.0 982,632 - -0.1 982,637 - +1.1 982,637 - -0.7 982,637 - -0.6 982,777 + Echvi_0862 0.11 -0.9 982,777 + Echvi_0862 0.11 -0.2 982,864 + Echvi_0862 0.19 -1.0 982,944 + Echvi_0862 0.25 -1.3 982,956 - Echvi_0862 0.26 +0.0 982,956 - Echvi_0862 0.26 +0.4 982,956 - Echvi_0862 0.26 +0.1 982,958 + Echvi_0862 0.26 -1.5 982,958 + Echvi_0862 0.26 -1.9 982,963 + Echvi_0862 0.27 -2.1 982,963 + Echvi_0862 0.27 -2.8 982,963 + Echvi_0862 0.27 -1.4 982,963 + Echvi_0862 0.27 -1.4 983,021 + Echvi_0862 0.31 -2.1 983,022 - Echvi_0862 0.31 -1.0 983,052 + Echvi_0862 0.34 -1.3 983,052 + Echvi_0862 0.34 -2.6 983,052 + Echvi_0862 0.34 -1.0 983,052 + Echvi_0862 0.34 -2.8 983,052 + Echvi_0862 0.34 -0.3 983,053 - Echvi_0862 0.34 -2.0 983,128 - Echvi_0862 0.40 +0.7 983,144 + Echvi_0862 0.41 -2.3 983,145 - Echvi_0862 0.41 +0.5 983,145 - Echvi_0862 0.41 +1.3 983,169 - Echvi_0862 0.43 +0.6 983,170 + Echvi_0862 0.43 -0.4 983,170 + Echvi_0862 0.43 -1.0 983,182 + Echvi_0862 0.44 -1.1 983,214 + Echvi_0862 0.47 -1.3 983,215 - Echvi_0862 0.47 +0.6 983,225 + Echvi_0862 0.48 -1.6 983,226 - Echvi_0862 0.48 +0.3 983,226 - Echvi_0862 0.48 -0.1 983,247 + Echvi_0862 0.50 -1.3 983,286 + Echvi_0862 0.53 -2.1 983,286 + Echvi_0862 0.53 -0.6 983,286 + Echvi_0862 0.53 -3.4 983,361 + Echvi_0862 0.59 -0.4 983,361 + Echvi_0862 0.59 -1.3 983,361 + Echvi_0862 0.59 -1.2 983,362 - Echvi_0862 0.59 +0.1 983,385 + Echvi_0862 0.61 -0.1 983,385 + Echvi_0862 0.61 -2.2 983,385 + Echvi_0862 0.61 -0.5 983,386 - Echvi_0862 0.61 +0.2 983,386 - Echvi_0862 0.61 -1.3 983,446 - Echvi_0862 0.66 -0.1 983,485 - Echvi_0862 0.69 +0.5 983,497 - Echvi_0862 0.70 +1.7 983,593 - Echvi_0862 0.78 -0.2 983,730 + Echvi_0862 0.89 -1.0 983,799 + -1.2 983,799 + -1.4 983,799 + -2.3 983,799 + -1.6 983,799 + -1.7 983,799 + -0.8 983,799 + -1.8 983,799 + -0.7 983,799 + -0.5 983,799 + -0.7 983,799 + -3.0 983,800 - +0.2 983,800 - +1.3 983,800 - -0.4 983,800 - -1.1 983,800 - +0.0 983,800 - +0.2 983,800 - +0.7 983,859 + -1.4 983,859 + -3.2 983,861 + -1.2 983,861 + -0.4 983,862 - -0.4 983,862 - +0.4 983,862 - +0.6 983,875 + -1.4 983,876 - +2.0 983,922 + -1.4 983,958 + -1.2 983,963 + -0.6 983,973 + -1.6 983,973 + -3.2 983,985 + -0.2 984,020 + -3.3 984,030 + -1.2 984,030 + -1.6
Or see this region's nucleotide sequence