Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0698

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0697 and Echvi_0698 are separated by 131 nucleotidesEchvi_0698 and Echvi_0699 are separated by 677 nucleotides Echvi_0697: Echvi_0697 - Aldose 1-epimerase (EC 5.1.3.3) (from data), at 787,573 to 788,652 _0697 Echvi_0698: Echvi_0698 - Transcriptional regulators, at 788,784 to 789,800 _0698 Echvi_0699: Echvi_0699 - Transposase and inactivated derivatives, at 790,478 to 791,467 _0699 Position (kb) 788 789 790Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 787.882 kb on + strand, within Echvi_0697at 787.882 kb on + strand, within Echvi_0697at 787.883 kb on - strand, within Echvi_0697at 787.958 kb on - strand, within Echvi_0697at 787.983 kb on + strand, within Echvi_0697at 788.004 kb on + strand, within Echvi_0697at 788.005 kb on - strand, within Echvi_0697at 788.005 kb on - strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.006 kb on + strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.007 kb on - strand, within Echvi_0697at 788.070 kb on + strand, within Echvi_0697at 788.076 kb on - strand, within Echvi_0697at 788.160 kb on + strand, within Echvi_0697at 788.192 kb on + strand, within Echvi_0697at 788.311 kb on - strand, within Echvi_0697at 788.314 kb on + strand, within Echvi_0697at 788.314 kb on + strand, within Echvi_0697at 788.315 kb on - strand, within Echvi_0697at 788.328 kb on - strand, within Echvi_0697at 788.370 kb on + strand, within Echvi_0697at 788.430 kb on + strand, within Echvi_0697at 788.430 kb on + strand, within Echvi_0697at 788.431 kb on - strand, within Echvi_0697at 788.432 kb on + strand, within Echvi_0697at 788.432 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.441 kb on + strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.442 kb on - strand, within Echvi_0697at 788.519 kb on + strand, within Echvi_0697at 788.519 kb on + strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.520 kb on - strand, within Echvi_0697at 788.566 kb on + strandat 788.657 kb on - strandat 788.666 kb on + strandat 788.667 kb on - strandat 788.689 kb on + strandat 788.689 kb on + strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.690 kb on - strandat 788.712 kb on - strandat 788.785 kb on + strandat 788.819 kb on + strandat 788.850 kb on - strandat 788.960 kb on + strand, within Echvi_0698at 788.960 kb on + strand, within Echvi_0698at 789.134 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.217 kb on + strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.218 kb on - strand, within Echvi_0698at 789.239 kb on + strand, within Echvi_0698at 789.246 kb on + strand, within Echvi_0698at 789.287 kb on + strand, within Echvi_0698at 789.289 kb on + strand, within Echvi_0698at 789.290 kb on - strand, within Echvi_0698at 789.520 kb on + strand, within Echvi_0698at 789.617 kb on + strand, within Echvi_0698at 789.655 kb on + strand, within Echvi_0698at 789.750 kb on - strandat 789.750 kb on - strandat 789.750 kb on - strandat 789.782 kb on + strandat 789.827 kb on + strandat 789.827 kb on + strandat 789.829 kb on + strandat 789.829 kb on + strandat 789.830 kb on - strandat 789.901 kb on + strandat 789.901 kb on + strandat 789.951 kb on - strandat 789.983 kb on - strandat 790.017 kb on + strandat 790.018 kb on - strandat 790.116 kb on - strandat 790.168 kb on + strandat 790.186 kb on - strandat 790.186 kb on - strandat 790.186 kb on - strandat 790.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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787,882 + Echvi_0697 0.29 -0.3
787,882 + Echvi_0697 0.29 +0.7
787,883 - Echvi_0697 0.29 +1.8
787,958 - Echvi_0697 0.36 -0.3
787,983 + Echvi_0697 0.38 +0.3
788,004 + Echvi_0697 0.40 -1.8
788,005 - Echvi_0697 0.40 +0.2
788,005 - Echvi_0697 0.40 +1.4
788,006 + Echvi_0697 0.40 +0.4
788,006 + Echvi_0697 0.40 -2.4
788,006 + Echvi_0697 0.40 +1.1
788,006 + Echvi_0697 0.40 -1.7
788,007 - Echvi_0697 0.40 -0.3
788,007 - Echvi_0697 0.40 -0.0
788,007 - Echvi_0697 0.40 +0.6
788,070 + Echvi_0697 0.46 -0.2
788,076 - Echvi_0697 0.47 +0.3
788,160 + Echvi_0697 0.54 -1.2
788,192 + Echvi_0697 0.57 -1.3
788,311 - Echvi_0697 0.68 -0.6
788,314 + Echvi_0697 0.69 -0.5
788,314 + Echvi_0697 0.69 +0.7
788,315 - Echvi_0697 0.69 +0.9
788,328 - Echvi_0697 0.70 +0.0
788,370 + Echvi_0697 0.74 -0.6
788,430 + Echvi_0697 0.79 +1.2
788,430 + Echvi_0697 0.79 +0.6
788,431 - Echvi_0697 0.79 -0.6
788,432 + Echvi_0697 0.80 +0.9
788,432 + Echvi_0697 0.80 -1.0
788,441 + Echvi_0697 0.80 +0.0
788,441 + Echvi_0697 0.80 +0.0
788,441 + Echvi_0697 0.80 +1.4
788,441 + Echvi_0697 0.80 -1.7
788,441 + Echvi_0697 0.80 +1.1
788,441 + Echvi_0697 0.80 +1.3
788,441 + Echvi_0697 0.80 +0.4
788,442 - Echvi_0697 0.80 -0.1
788,442 - Echvi_0697 0.80 +0.4
788,442 - Echvi_0697 0.80 -1.1
788,442 - Echvi_0697 0.80 -0.7
788,442 - Echvi_0697 0.80 -0.5
788,519 + Echvi_0697 0.88 +0.0
788,519 + Echvi_0697 0.88 -1.7
788,520 - Echvi_0697 0.88 +0.1
788,520 - Echvi_0697 0.88 -1.6
788,520 - Echvi_0697 0.88 +0.0
788,566 + -0.5
788,657 - +3.2
788,666 + +0.5
788,667 - -0.8
788,689 + -0.1
788,689 + +0.0
788,690 - -0.3
788,690 - +0.6
788,690 - +0.6
788,712 - +0.6
788,785 + -0.6
788,819 + -0.4
788,850 - -1.0
788,960 + Echvi_0698 0.17 -0.1
788,960 + Echvi_0698 0.17 -0.5
789,134 + Echvi_0698 0.34 -0.4
789,217 + Echvi_0698 0.43 -0.5
789,217 + Echvi_0698 0.43 +0.3
789,217 + Echvi_0698 0.43 -0.9
789,217 + Echvi_0698 0.43 -0.5
789,217 + Echvi_0698 0.43 -0.2
789,217 + Echvi_0698 0.43 -1.2
789,217 + Echvi_0698 0.43 +1.6
789,218 - Echvi_0698 0.43 +0.8
789,218 - Echvi_0698 0.43 +0.8
789,218 - Echvi_0698 0.43 +0.2
789,218 - Echvi_0698 0.43 -0.1
789,218 - Echvi_0698 0.43 +0.4
789,218 - Echvi_0698 0.43 -0.7
789,218 - Echvi_0698 0.43 +0.5
789,218 - Echvi_0698 0.43 -0.1
789,239 + Echvi_0698 0.45 +0.8
789,246 + Echvi_0698 0.45 -0.2
789,287 + Echvi_0698 0.49 -1.1
789,289 + Echvi_0698 0.50 -0.4
789,290 - Echvi_0698 0.50 +0.3
789,520 + Echvi_0698 0.72 -0.4
789,617 + Echvi_0698 0.82 -0.1
789,655 + Echvi_0698 0.86 -0.7
789,750 - -1.4
789,750 - -0.2
789,750 - -0.3
789,782 + +0.3
789,827 + -0.4
789,827 + -0.6
789,829 + +0.1
789,829 + -0.4
789,830 - +0.1
789,901 + +0.7
789,901 + -2.8
789,951 - +0.2
789,983 - +0.1
790,017 + +0.3
790,018 - +0.2
790,116 - +0.3
790,168 + +0.7
790,186 - +0.2
790,186 - -0.7
790,186 - +1.3
790,202 - -0.6

Or see this region's nucleotide sequence