Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0566

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0565 and Echvi_0566 are separated by 590 nucleotidesEchvi_0566 and Echvi_0567 are separated by 20 nucleotides Echvi_0565: Echvi_0565 - Predicted dehydrogenases and related proteins, at 639,243 to 640,709 _0565 Echvi_0566: Echvi_0566 - TonB-dependent receptor for glucose (SusC-like) (from data), at 641,300 to 644,539 _0566 Echvi_0567: Echvi_0567 - outer membrane binding protein for glucose (SusD-like) (from data), at 644,560 to 646,344 _0567 Position (kb) 641 642 643 644 645Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 640.300 kb on + strand, within Echvi_0565at 640.300 kb on + strand, within Echvi_0565at 640.300 kb on + strand, within Echvi_0565at 640.301 kb on - strand, within Echvi_0565at 640.301 kb on - strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.302 kb on + strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.303 kb on - strand, within Echvi_0565at 640.347 kb on + strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.348 kb on - strand, within Echvi_0565at 640.420 kb on + strand, within Echvi_0565at 640.420 kb on + strand, within Echvi_0565at 640.421 kb on - strand, within Echvi_0565at 640.477 kb on - strand, within Echvi_0565at 640.714 kb on + strandat 640.716 kb on + strandat 640.717 kb on - strandat 640.910 kb on + strandat 640.928 kb on + strandat 640.932 kb on - strandat 640.951 kb on + strandat 641.046 kb on + strandat 641.054 kb on + strandat 641.055 kb on - strandat 641.090 kb on - strandat 641.120 kb on + strandat 641.120 kb on + strandat 641.120 kb on + strandat 641.120 kb on + strandat 641.148 kb on - strandat 641.172 kb on - strandat 641.177 kb on + strandat 641.198 kb on + strandat 641.198 kb on + strandat 641.204 kb on - strandat 641.204 kb on - strandat 641.204 kb on - strandat 641.204 kb on - strandat 641.225 kb on + strandat 641.245 kb on + strandat 641.245 kb on + strandat 641.277 kb on + strandat 641.278 kb on - strandat 641.284 kb on - strandat 641.287 kb on + strandat 641.293 kb on + strandat 641.350 kb on + strandat 641.398 kb on - strandat 641.455 kb on + strandat 641.455 kb on + strandat 641.455 kb on + strandat 641.456 kb on - strandat 641.456 kb on - strandat 641.508 kb on - strandat 641.520 kb on + strandat 641.521 kb on - strandat 641.521 kb on - strandat 641.533 kb on + strandat 641.558 kb on + strandat 641.599 kb on - strandat 641.830 kb on - strand, within Echvi_0566at 641.849 kb on - strand, within Echvi_0566at 641.849 kb on - strand, within Echvi_0566at 641.914 kb on - strand, within Echvi_0566at 641.914 kb on - strand, within Echvi_0566at 641.954 kb on - strand, within Echvi_0566at 642.029 kb on + strand, within Echvi_0566at 642.029 kb on + strand, within Echvi_0566at 642.030 kb on - strand, within Echvi_0566at 642.030 kb on - strand, within Echvi_0566at 642.030 kb on - strand, within Echvi_0566at 642.038 kb on + strand, within Echvi_0566at 642.038 kb on + strand, within Echvi_0566at 642.039 kb on - strand, within Echvi_0566at 642.039 kb on - strand, within Echvi_0566at 642.197 kb on + strand, within Echvi_0566at 642.197 kb on + strand, within Echvi_0566at 642.197 kb on + strand, within Echvi_0566at 642.197 kb on + strand, within Echvi_0566at 642.198 kb on - strand, within Echvi_0566at 642.199 kb on + strand, within Echvi_0566at 642.210 kb on + strand, within Echvi_0566at 642.239 kb on + strand, within Echvi_0566at 642.240 kb on - strand, within Echvi_0566at 642.240 kb on - strand, within Echvi_0566at 642.241 kb on + strand, within Echvi_0566at 642.242 kb on - strand, within Echvi_0566at 642.254 kb on + strand, within Echvi_0566at 642.255 kb on - strand, within Echvi_0566at 642.255 kb on - strand, within Echvi_0566at 642.401 kb on + strand, within Echvi_0566at 642.448 kb on + strand, within Echvi_0566at 642.449 kb on - strand, within Echvi_0566at 642.449 kb on - strand, within Echvi_0566at 642.449 kb on - strand, within Echvi_0566at 642.488 kb on + strand, within Echvi_0566at 642.488 kb on + strand, within Echvi_0566at 642.489 kb on - strand, within Echvi_0566at 642.490 kb on + strand, within Echvi_0566at 642.511 kb on + strand, within Echvi_0566at 642.530 kb on + strand, within Echvi_0566at 642.530 kb on + strand, within Echvi_0566at 642.673 kb on + strand, within Echvi_0566at 642.745 kb on - strand, within Echvi_0566at 642.803 kb on + strand, within Echvi_0566at 642.804 kb on - strand, within Echvi_0566at 642.814 kb on + strand, within Echvi_0566at 642.814 kb on + strand, within Echvi_0566at 642.815 kb on - strand, within Echvi_0566at 642.815 kb on - strand, within Echvi_0566at 642.875 kb on + strand, within Echvi_0566at 642.875 kb on + strand, within Echvi_0566at 642.875 kb on + strand, within Echvi_0566at 642.901 kb on + strand, within Echvi_0566at 642.901 kb on + strand, within Echvi_0566at 642.906 kb on - strand, within Echvi_0566at 642.925 kb on + strand, within Echvi_0566at 642.930 kb on - strand, within Echvi_0566at 643.020 kb on - strand, within Echvi_0566at 643.102 kb on + strand, within Echvi_0566at 643.102 kb on + strand, within Echvi_0566at 643.139 kb on + strand, within Echvi_0566at 643.145 kb on + strand, within Echvi_0566at 643.145 kb on + strand, within Echvi_0566at 643.145 kb on + strand, within Echvi_0566at 643.145 kb on + strand, within Echvi_0566at 643.146 kb on - strand, within Echvi_0566at 643.146 kb on - strand, within Echvi_0566at 643.146 kb on - strand, within Echvi_0566at 643.153 kb on + strand, within Echvi_0566at 643.153 kb on + strand, within Echvi_0566at 643.157 kb on + strand, within Echvi_0566at 643.157 kb on + strand, within Echvi_0566at 643.158 kb on - strand, within Echvi_0566at 643.158 kb on - strand, within Echvi_0566at 643.214 kb on + strand, within Echvi_0566at 643.267 kb on + strand, within Echvi_0566at 643.302 kb on + strand, within Echvi_0566at 643.359 kb on - strand, within Echvi_0566at 643.364 kb on - strand, within Echvi_0566at 643.364 kb on - strand, within Echvi_0566at 643.367 kb on + strand, within Echvi_0566at 643.367 kb on + strand, within Echvi_0566at 643.368 kb on - strand, within Echvi_0566at 643.368 kb on - strand, within Echvi_0566at 643.391 kb on + strand, within Echvi_0566at 643.392 kb on - strand, within Echvi_0566at 643.399 kb on + strand, within Echvi_0566at 643.423 kb on - strand, within Echvi_0566at 643.484 kb on - strand, within Echvi_0566at 643.544 kb on + strand, within Echvi_0566at 643.544 kb on + strand, within Echvi_0566at 643.544 kb on + strand, within Echvi_0566at 643.547 kb on + strand, within Echvi_0566at 643.548 kb on - strand, within Echvi_0566at 643.548 kb on - strand, within Echvi_0566at 643.548 kb on - strand, within Echvi_0566at 643.548 kb on - strand, within Echvi_0566at 643.549 kb on + strand, within Echvi_0566at 643.552 kb on + strand, within Echvi_0566at 643.574 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.619 kb on + strand, within Echvi_0566at 643.620 kb on - strand, within Echvi_0566at 643.673 kb on + strand, within Echvi_0566at 643.673 kb on + strand, within Echvi_0566at 643.674 kb on - strand, within Echvi_0566at 643.674 kb on - strand, within Echvi_0566at 643.674 kb on - strand, within Echvi_0566at 643.679 kb on - strand, within Echvi_0566at 643.702 kb on + strand, within Echvi_0566at 643.721 kb on - strand, within Echvi_0566at 643.723 kb on + strand, within Echvi_0566at 643.727 kb on + strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.728 kb on - strand, within Echvi_0566at 643.969 kb on + strand, within Echvi_0566at 643.970 kb on - strand, within Echvi_0566at 643.973 kb on + strand, within Echvi_0566at 644.106 kb on - strand, within Echvi_0566at 644.159 kb on + strand, within Echvi_0566at 644.239 kb on + strandat 644.239 kb on + strandat 644.239 kb on + strandat 644.240 kb on - strandat 644.240 kb on - strandat 644.278 kb on - strandat 644.288 kb on + strandat 644.468 kb on - strandat 644.513 kb on - strandat 644.537 kb on + strandat 644.559 kb on + strandat 644.560 kb on - strandat 644.574 kb on + strandat 644.586 kb on + strandat 644.600 kb on + strandat 644.806 kb on + strand, within Echvi_0567at 644.807 kb on - strand, within Echvi_0567at 644.816 kb on + strand, within Echvi_0567at 644.817 kb on - strand, within Echvi_0567at 644.817 kb on - strand, within Echvi_0567at 644.887 kb on + strand, within Echvi_0567at 645.236 kb on - strand, within Echvi_0567at 645.250 kb on + strand, within Echvi_0567at 645.251 kb on - strand, within Echvi_0567at 645.251 kb on - strand, within Echvi_0567at 645.283 kb on - strand, within Echvi_0567at 645.348 kb on + strand, within Echvi_0567at 645.398 kb on + strand, within Echvi_0567

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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640,300 + Echvi_0565 0.72 -1.9
640,300 + Echvi_0565 0.72 -1.2
640,300 + Echvi_0565 0.72 -1.3
640,301 - Echvi_0565 0.72 +0.4
640,301 - Echvi_0565 0.72 +0.2
640,302 + Echvi_0565 0.72 -0.5
640,302 + Echvi_0565 0.72 -2.0
640,302 + Echvi_0565 0.72 -0.8
640,302 + Echvi_0565 0.72 -1.6
640,302 + Echvi_0565 0.72 -1.2
640,302 + Echvi_0565 0.72 -1.8
640,303 - Echvi_0565 0.72 +0.0
640,303 - Echvi_0565 0.72 -0.3
640,303 - Echvi_0565 0.72 +0.5
640,303 - Echvi_0565 0.72 -0.9
640,303 - Echvi_0565 0.72 +1.2
640,347 + Echvi_0565 0.75 -1.5
640,348 - Echvi_0565 0.75 -1.6
640,348 - Echvi_0565 0.75 +0.5
640,348 - Echvi_0565 0.75 -0.1
640,348 - Echvi_0565 0.75 -0.6
640,348 - Echvi_0565 0.75 +0.3
640,420 + Echvi_0565 0.80 -1.3
640,420 + Echvi_0565 0.80 -2.0
640,421 - Echvi_0565 0.80 -0.6
640,477 - Echvi_0565 0.84 -1.1
640,714 + -1.6
640,716 + -3.5
640,717 - +0.0
640,910 + -2.5
640,928 + -3.5
640,932 - -0.5
640,951 + -4.3
641,046 + -2.5
641,054 + -2.8
641,055 - -1.6
641,090 - -0.7
641,120 + -2.9
641,120 + -1.3
641,120 + -1.5
641,120 + -1.4
641,148 - +0.6
641,172 - -1.3
641,177 + -2.6
641,198 + -0.9
641,198 + -1.0
641,204 - +0.4
641,204 - -0.2
641,204 - +0.5
641,204 - +0.1
641,225 + -3.0
641,245 + -0.7
641,245 + -3.2
641,277 + -1.5
641,278 - +0.3
641,284 - -2.1
641,287 + -0.5
641,293 + +1.0
641,350 + +1.0
641,398 - -0.9
641,455 + -1.3
641,455 + +0.2
641,455 + -0.9
641,456 - +1.0
641,456 - +0.0
641,508 - -0.5
641,520 + -0.2
641,521 - -2.7
641,521 - -2.0
641,533 + +0.5
641,558 + -1.0
641,599 - -1.5
641,830 - Echvi_0566 0.16 -2.0
641,849 - Echvi_0566 0.17 +1.0
641,849 - Echvi_0566 0.17 -0.1
641,914 - Echvi_0566 0.19 +0.0
641,914 - Echvi_0566 0.19 +0.2
641,954 - Echvi_0566 0.20 -0.8
642,029 + Echvi_0566 0.23 -0.7
642,029 + Echvi_0566 0.23 -0.4
642,030 - Echvi_0566 0.23 -0.1
642,030 - Echvi_0566 0.23 +0.8
642,030 - Echvi_0566 0.23 -0.1
642,038 + Echvi_0566 0.23 +0.3
642,038 + Echvi_0566 0.23 -0.0
642,039 - Echvi_0566 0.23 -0.3
642,039 - Echvi_0566 0.23 -0.9
642,197 + Echvi_0566 0.28 -0.7
642,197 + Echvi_0566 0.28 -0.2
642,197 + Echvi_0566 0.28 -0.8
642,197 + Echvi_0566 0.28 -0.8
642,198 - Echvi_0566 0.28 +0.2
642,199 + Echvi_0566 0.28 -0.9
642,210 + Echvi_0566 0.28 -0.4
642,239 + Echvi_0566 0.29 -0.7
642,240 - Echvi_0566 0.29 -1.1
642,240 - Echvi_0566 0.29 +1.6
642,241 + Echvi_0566 0.29 -2.0
642,242 - Echvi_0566 0.29 +0.2
642,254 + Echvi_0566 0.29 -3.4
642,255 - Echvi_0566 0.29 -0.3
642,255 - Echvi_0566 0.29 +0.4
642,401 + Echvi_0566 0.34 +0.6
642,448 + Echvi_0566 0.35 +1.6
642,449 - Echvi_0566 0.35 -1.0
642,449 - Echvi_0566 0.35 -0.7
642,449 - Echvi_0566 0.35 -0.6
642,488 + Echvi_0566 0.37 -2.1
642,488 + Echvi_0566 0.37 -0.1
642,489 - Echvi_0566 0.37 +0.2
642,490 + Echvi_0566 0.37 -0.7
642,511 + Echvi_0566 0.37 -1.0
642,530 + Echvi_0566 0.38 +0.7
642,530 + Echvi_0566 0.38 -0.4
642,673 + Echvi_0566 0.42 -1.5
642,745 - Echvi_0566 0.45 -1.2
642,803 + Echvi_0566 0.46 -0.3
642,804 - Echvi_0566 0.46 +1.0
642,814 + Echvi_0566 0.47 -0.4
642,814 + Echvi_0566 0.47 -0.8
642,815 - Echvi_0566 0.47 +0.0
642,815 - Echvi_0566 0.47 -0.7
642,875 + Echvi_0566 0.49 -1.9
642,875 + Echvi_0566 0.49 +0.7
642,875 + Echvi_0566 0.49 -0.1
642,901 + Echvi_0566 0.49 -0.7
642,901 + Echvi_0566 0.49 +0.8
642,906 - Echvi_0566 0.50 -1.9
642,925 + Echvi_0566 0.50 -1.4
642,930 - Echvi_0566 0.50 -1.5
643,020 - Echvi_0566 0.53 -1.2
643,102 + Echvi_0566 0.56 -1.3
643,102 + Echvi_0566 0.56 -0.4
643,139 + Echvi_0566 0.57 +0.6
643,145 + Echvi_0566 0.57 +0.2
643,145 + Echvi_0566 0.57 -1.1
643,145 + Echvi_0566 0.57 +0.5
643,145 + Echvi_0566 0.57 +0.3
643,146 - Echvi_0566 0.57 -2.1
643,146 - Echvi_0566 0.57 -1.0
643,146 - Echvi_0566 0.57 +3.2
643,153 + Echvi_0566 0.57 +0.9
643,153 + Echvi_0566 0.57 -1.4
643,157 + Echvi_0566 0.57 +0.0
643,157 + Echvi_0566 0.57 -0.9
643,158 - Echvi_0566 0.57 -2.0
643,158 - Echvi_0566 0.57 +0.4
643,214 + Echvi_0566 0.59 -2.0
643,267 + Echvi_0566 0.61 -1.1
643,302 + Echvi_0566 0.62 +1.6
643,359 - Echvi_0566 0.64 +0.6
643,364 - Echvi_0566 0.64 -0.4
643,364 - Echvi_0566 0.64 -1.9
643,367 + Echvi_0566 0.64 -0.4
643,367 + Echvi_0566 0.64 +1.3
643,368 - Echvi_0566 0.64 -0.6
643,368 - Echvi_0566 0.64 -0.3
643,391 + Echvi_0566 0.65 -1.6
643,392 - Echvi_0566 0.65 -1.3
643,399 + Echvi_0566 0.65 -0.6
643,423 - Echvi_0566 0.66 -0.2
643,484 - Echvi_0566 0.67 +0.8
643,544 + Echvi_0566 0.69 +1.6
643,544 + Echvi_0566 0.69 +0.0
643,544 + Echvi_0566 0.69 -0.4
643,547 + Echvi_0566 0.69 -0.7
643,548 - Echvi_0566 0.69 +1.0
643,548 - Echvi_0566 0.69 -0.2
643,548 - Echvi_0566 0.69 -0.7
643,548 - Echvi_0566 0.69 -0.4
643,549 + Echvi_0566 0.69 +0.3
643,552 + Echvi_0566 0.70 -1.0
643,574 + Echvi_0566 0.70 -0.1
643,619 + Echvi_0566 0.72 -0.1
643,619 + Echvi_0566 0.72 +0.6
643,619 + Echvi_0566 0.72 -1.5
643,619 + Echvi_0566 0.72 -1.2
643,619 + Echvi_0566 0.72 +0.7
643,620 - Echvi_0566 0.72 -0.4
643,673 + Echvi_0566 0.73 -0.3
643,673 + Echvi_0566 0.73 +2.0
643,674 - Echvi_0566 0.73 -0.7
643,674 - Echvi_0566 0.73 +0.5
643,674 - Echvi_0566 0.73 -0.2
643,679 - Echvi_0566 0.73 -0.4
643,702 + Echvi_0566 0.74 +0.4
643,721 - Echvi_0566 0.75 +3.2
643,723 + Echvi_0566 0.75 -0.4
643,727 + Echvi_0566 0.75 +0.6
643,728 - Echvi_0566 0.75 -0.6
643,728 - Echvi_0566 0.75 -1.4
643,728 - Echvi_0566 0.75 -0.1
643,728 - Echvi_0566 0.75 -0.6
643,969 + Echvi_0566 0.82 -2.3
643,970 - Echvi_0566 0.82 -1.6
643,973 + Echvi_0566 0.82 -1.3
644,106 - Echvi_0566 0.87 -1.6
644,159 + Echvi_0566 0.88 +0.1
644,239 + +0.5
644,239 + +0.3
644,239 + -0.3
644,240 - -0.2
644,240 - -0.2
644,278 - +1.2
644,288 + -1.8
644,468 - +0.9
644,513 - +0.3
644,537 + +0.3
644,559 + +0.8
644,560 - -1.0
644,574 + +0.2
644,586 + +1.6
644,600 + +0.2
644,806 + Echvi_0567 0.14 -1.6
644,807 - Echvi_0567 0.14 -1.3
644,816 + Echvi_0567 0.14 +0.2
644,817 - Echvi_0567 0.14 -1.0
644,817 - Echvi_0567 0.14 +0.9
644,887 + Echvi_0567 0.18 -0.7
645,236 - Echvi_0567 0.38 +0.0
645,250 + Echvi_0567 0.39 -1.1
645,251 - Echvi_0567 0.39 +0.0
645,251 - Echvi_0567 0.39 +0.8
645,283 - Echvi_0567 0.41 -0.8
645,348 + Echvi_0567 0.44 +0.6
645,398 + Echvi_0567 0.47 -2.0

Or see this region's nucleotide sequence