Experiment: m.b. Vancomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0422 and Echvi_0423 are separated by 3 nucleotides Echvi_0423 and Echvi_0424 are separated by 1 nucleotides
Echvi_0422: Echvi_0422 - Type I site-specific restriction-modification system, R (restriction) subunit and related helicases, at 464,393 to 467,821
_0422
Echvi_0423: Echvi_0423 - Restriction endonuclease S subunits, at 467,825 to 469,027
_0423
Echvi_0424: Echvi_0424 - Type I restriction-modification system methyltransferase subunit, at 469,029 to 470,615
_0424
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 466.889 kb on - strand, within Echvi_0422 at 466.889 kb on - strand, within Echvi_0422 at 466.889 kb on - strand, within Echvi_0422 at 466.890 kb on + strand, within Echvi_0422 at 466.893 kb on + strand, within Echvi_0422 at 466.894 kb on - strand, within Echvi_0422 at 467.034 kb on + strand, within Echvi_0422 at 467.049 kb on - strand, within Echvi_0422 at 467.084 kb on + strand, within Echvi_0422 at 467.103 kb on + strand, within Echvi_0422 at 467.104 kb on - strand, within Echvi_0422 at 467.154 kb on + strand, within Echvi_0422 at 467.157 kb on - strand, within Echvi_0422 at 467.157 kb on - strand, within Echvi_0422 at 467.168 kb on - strand, within Echvi_0422 at 467.189 kb on - strand, within Echvi_0422 at 467.267 kb on - strand, within Echvi_0422 at 467.304 kb on - strand, within Echvi_0422 at 467.386 kb on + strand, within Echvi_0422 at 467.420 kb on - strand, within Echvi_0422 at 467.577 kb on + strand at 467.589 kb on + strand at 467.589 kb on + strand at 467.589 kb on + strand at 467.780 kb on + strand at 467.802 kb on - strand at 467.803 kb on + strand at 467.803 kb on + strand at 467.858 kb on + strand at 467.859 kb on - strand at 467.933 kb on + strand at 467.934 kb on - strand at 467.934 kb on - strand at 467.992 kb on + strand, within Echvi_0423 at 467.992 kb on + strand, within Echvi_0423 at 468.007 kb on + strand, within Echvi_0423 at 468.007 kb on + strand, within Echvi_0423 at 468.007 kb on + strand, within Echvi_0423 at 468.042 kb on - strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.048 kb on + strand, within Echvi_0423 at 468.049 kb on - strand, within Echvi_0423 at 468.049 kb on - strand, within Echvi_0423 at 468.049 kb on - strand, within Echvi_0423 at 468.070 kb on + strand, within Echvi_0423 at 468.090 kb on + strand, within Echvi_0423 at 468.101 kb on + strand, within Echvi_0423 at 468.104 kb on + strand, within Echvi_0423 at 468.105 kb on - strand, within Echvi_0423 at 468.175 kb on + strand, within Echvi_0423 at 468.175 kb on + strand, within Echvi_0423 at 468.176 kb on - strand, within Echvi_0423 at 468.176 kb on - strand, within Echvi_0423 at 468.214 kb on + strand, within Echvi_0423 at 468.226 kb on + strand, within Echvi_0423 at 468.239 kb on + strand, within Echvi_0423 at 468.239 kb on + strand, within Echvi_0423 at 468.240 kb on - strand, within Echvi_0423 at 468.246 kb on + strand, within Echvi_0423 at 468.275 kb on + strand, within Echvi_0423 at 468.283 kb on + strand, within Echvi_0423 at 468.299 kb on + strand, within Echvi_0423 at 468.325 kb on + strand, within Echvi_0423 at 468.326 kb on - strand, within Echvi_0423 at 468.373 kb on - strand, within Echvi_0423 at 468.406 kb on + strand, within Echvi_0423 at 468.407 kb on - strand, within Echvi_0423 at 468.410 kb on + strand, within Echvi_0423 at 468.411 kb on - strand, within Echvi_0423 at 468.492 kb on + strand, within Echvi_0423 at 468.493 kb on - strand, within Echvi_0423 at 468.592 kb on + strand, within Echvi_0423 at 468.611 kb on + strand, within Echvi_0423 at 468.612 kb on - strand, within Echvi_0423 at 468.617 kb on - strand, within Echvi_0423 at 468.631 kb on + strand, within Echvi_0423 at 468.631 kb on + strand, within Echvi_0423 at 468.688 kb on - strand, within Echvi_0423 at 468.701 kb on - strand, within Echvi_0423 at 468.703 kb on + strand, within Echvi_0423 at 468.704 kb on - strand, within Echvi_0423 at 468.780 kb on + strand, within Echvi_0423 at 468.781 kb on - strand, within Echvi_0423 at 468.781 kb on - strand, within Echvi_0423 at 468.781 kb on - strand, within Echvi_0423 at 468.809 kb on - strand, within Echvi_0423 at 468.844 kb on + strand, within Echvi_0423 at 468.852 kb on + strand, within Echvi_0423 at 468.853 kb on - strand, within Echvi_0423 at 468.861 kb on + strand, within Echvi_0423 at 468.862 kb on - strand, within Echvi_0423 at 468.862 kb on - strand, within Echvi_0423 at 468.881 kb on + strand, within Echvi_0423 at 468.894 kb on - strand, within Echvi_0423 at 468.903 kb on + strand, within Echvi_0423 at 468.907 kb on + strand at 468.982 kb on + strand at 468.982 kb on + strand at 468.991 kb on + strand at 468.992 kb on - strand at 468.992 kb on - strand at 469.027 kb on + strand at 469.038 kb on + strand at 469.059 kb on + strand at 469.062 kb on + strand at 469.094 kb on + strand at 469.094 kb on + strand at 469.123 kb on + strand at 469.139 kb on - strand at 469.139 kb on - strand at 469.139 kb on - strand at 469.160 kb on + strand at 469.167 kb on + strand at 469.174 kb on + strand at 469.368 kb on + strand, within Echvi_0424 at 469.410 kb on - strand, within Echvi_0424 at 469.427 kb on + strand, within Echvi_0424 at 469.450 kb on + strand, within Echvi_0424 at 469.479 kb on - strand, within Echvi_0424 at 469.479 kb on - strand, within Echvi_0424 at 469.534 kb on - strand, within Echvi_0424 at 469.553 kb on + strand, within Echvi_0424 at 469.602 kb on - strand, within Echvi_0424 at 469.677 kb on + strand, within Echvi_0424 at 469.678 kb on - strand, within Echvi_0424 at 469.678 kb on - strand, within Echvi_0424 at 469.805 kb on + strand, within Echvi_0424 at 469.929 kb on - strand, within Echvi_0424 at 469.999 kb on + strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424 at 470.000 kb on - strand, within Echvi_0424
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml remove 466,889 - Echvi_0422 0.73 -0.0 466,889 - Echvi_0422 0.73 -0.3 466,889 - Echvi_0422 0.73 +0.8 466,890 + Echvi_0422 0.73 -0.5 466,893 + Echvi_0422 0.73 -0.4 466,894 - Echvi_0422 0.73 -0.0 467,034 + Echvi_0422 0.77 -0.3 467,049 - Echvi_0422 0.77 +0.6 467,084 + Echvi_0422 0.78 -0.7 467,103 + Echvi_0422 0.79 +0.4 467,104 - Echvi_0422 0.79 -1.1 467,154 + Echvi_0422 0.81 -0.1 467,157 - Echvi_0422 0.81 -1.2 467,157 - Echvi_0422 0.81 +0.3 467,168 - Echvi_0422 0.81 -0.3 467,189 - Echvi_0422 0.82 +0.4 467,267 - Echvi_0422 0.84 -1.1 467,304 - Echvi_0422 0.85 -0.7 467,386 + Echvi_0422 0.87 -0.7 467,420 - Echvi_0422 0.88 +0.1 467,577 + -1.7 467,589 + -0.4 467,589 + +0.4 467,589 + +0.0 467,780 + -1.3 467,802 - -0.4 467,803 + -0.0 467,803 + -0.4 467,858 + +0.5 467,859 - +1.0 467,933 + -0.1 467,934 - -0.2 467,934 - -0.7 467,992 + Echvi_0423 0.14 -3.0 467,992 + Echvi_0423 0.14 +1.0 468,007 + Echvi_0423 0.15 -0.8 468,007 + Echvi_0423 0.15 +1.2 468,007 + Echvi_0423 0.15 -0.4 468,042 - Echvi_0423 0.18 -0.5 468,048 + Echvi_0423 0.19 +0.7 468,048 + Echvi_0423 0.19 -0.3 468,048 + Echvi_0423 0.19 -0.6 468,048 + Echvi_0423 0.19 -2.0 468,049 - Echvi_0423 0.19 -0.0 468,049 - Echvi_0423 0.19 +0.4 468,049 - Echvi_0423 0.19 -0.6 468,070 + Echvi_0423 0.20 -1.0 468,090 + Echvi_0423 0.22 -1.3 468,101 + Echvi_0423 0.23 +0.4 468,104 + Echvi_0423 0.23 +0.2 468,105 - Echvi_0423 0.23 -0.5 468,175 + Echvi_0423 0.29 +0.6 468,175 + Echvi_0423 0.29 -0.5 468,176 - Echvi_0423 0.29 +0.6 468,176 - Echvi_0423 0.29 -0.9 468,214 + Echvi_0423 0.32 -1.7 468,226 + Echvi_0423 0.33 +0.6 468,239 + Echvi_0423 0.34 -0.8 468,239 + Echvi_0423 0.34 +0.4 468,240 - Echvi_0423 0.34 +0.3 468,246 + Echvi_0423 0.35 -0.2 468,275 + Echvi_0423 0.37 +0.6 468,283 + Echvi_0423 0.38 +0.3 468,299 + Echvi_0423 0.39 +1.4 468,325 + Echvi_0423 0.42 -1.2 468,326 - Echvi_0423 0.42 -0.4 468,373 - Echvi_0423 0.46 -1.2 468,406 + Echvi_0423 0.48 -0.2 468,407 - Echvi_0423 0.48 -1.2 468,410 + Echvi_0423 0.49 -0.6 468,411 - Echvi_0423 0.49 -1.9 468,492 + Echvi_0423 0.55 +0.6 468,493 - Echvi_0423 0.56 +0.1 468,592 + Echvi_0423 0.64 -0.0 468,611 + Echvi_0423 0.65 -0.9 468,612 - Echvi_0423 0.65 +0.0 468,617 - Echvi_0423 0.66 -0.7 468,631 + Echvi_0423 0.67 -0.7 468,631 + Echvi_0423 0.67 -0.2 468,688 - Echvi_0423 0.72 +0.3 468,701 - Echvi_0423 0.73 -0.0 468,703 + Echvi_0423 0.73 -0.7 468,704 - Echvi_0423 0.73 +1.6 468,780 + Echvi_0423 0.79 -0.3 468,781 - Echvi_0423 0.79 -0.3 468,781 - Echvi_0423 0.79 -0.2 468,781 - Echvi_0423 0.79 -0.2 468,809 - Echvi_0423 0.82 -0.5 468,844 + Echvi_0423 0.85 -0.0 468,852 + Echvi_0423 0.85 -1.5 468,853 - Echvi_0423 0.85 +2.3 468,861 + Echvi_0423 0.86 -0.0 468,862 - Echvi_0423 0.86 -0.5 468,862 - Echvi_0423 0.86 +0.1 468,881 + Echvi_0423 0.88 -1.5 468,894 - Echvi_0423 0.89 -0.6 468,903 + Echvi_0423 0.90 -0.1 468,907 + +0.1 468,982 + +1.1 468,982 + +0.9 468,991 + -0.2 468,992 - -0.0 468,992 - +0.1 469,027 + -0.2 469,038 + -0.4 469,059 + -2.5 469,062 + -2.7 469,094 + -0.1 469,094 + -0.3 469,123 + -1.9 469,139 - -1.3 469,139 - -0.1 469,139 - +1.5 469,160 + -0.2 469,167 + -1.0 469,174 + +0.1 469,368 + Echvi_0424 0.21 -0.7 469,410 - Echvi_0424 0.24 +0.2 469,427 + Echvi_0424 0.25 -0.9 469,450 + Echvi_0424 0.27 -0.5 469,479 - Echvi_0424 0.28 -0.0 469,479 - Echvi_0424 0.28 +0.2 469,534 - Echvi_0424 0.32 +0.0 469,553 + Echvi_0424 0.33 +0.6 469,602 - Echvi_0424 0.36 -0.3 469,677 + Echvi_0424 0.41 -2.1 469,678 - Echvi_0424 0.41 -0.7 469,678 - Echvi_0424 0.41 -0.1 469,805 + Echvi_0424 0.49 -1.8 469,929 - Echvi_0424 0.57 +0.7 469,999 + Echvi_0424 0.61 -0.3 470,000 - Echvi_0424 0.61 -0.6 470,000 - Echvi_0424 0.61 -0.8 470,000 - Echvi_0424 0.61 -2.1 470,000 - Echvi_0424 0.61 -0.2 470,000 - Echvi_0424 0.61 +0.1
Or see this region's nucleotide sequence