Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0392

Experiment: m.b. Vancomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0390 and Echvi_0391 overlap by 11 nucleotidesEchvi_0391 and Echvi_0392 are separated by 101 nucleotidesEchvi_0392 and Echvi_0393 are separated by 32 nucleotidesEchvi_0393 and Echvi_0394 overlap by 61 nucleotidesEchvi_0394 and Echvi_0395 are separated by 207 nucleotides Echvi_0390: Echvi_0390 - Relaxase/Mobilisation nuclease domain., at 415,937 to 417,112 _0390 Echvi_0391: Echvi_0391 - Bacterial mobilisation protein (MobC)., at 417,102 to 417,446 _0391 Echvi_0392: Echvi_0392 - DNA primase (bacterial type), at 417,548 to 418,410 _0392 Echvi_0393: Echvi_0393 - hypothetical protein, at 418,443 to 418,616 _0393 Echvi_0394: Echvi_0394 - hypothetical protein, at 418,556 to 418,837 _0394 Echvi_0395: Echvi_0395 - DNA repair proteins, at 419,045 to 419,515 _0395 Position (kb) 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2at 416.552 kb on + strand, within Echvi_0390at 416.556 kb on - strand, within Echvi_0390at 416.564 kb on + strand, within Echvi_0390at 416.565 kb on - strand, within Echvi_0390at 416.657 kb on + strand, within Echvi_0390at 416.658 kb on - strand, within Echvi_0390at 416.658 kb on - strand, within Echvi_0390at 416.713 kb on + strand, within Echvi_0390at 416.715 kb on + strand, within Echvi_0390at 416.716 kb on - strand, within Echvi_0390at 416.726 kb on - strand, within Echvi_0390at 416.848 kb on - strand, within Echvi_0390at 416.883 kb on - strand, within Echvi_0390at 416.907 kb on - strand, within Echvi_0390at 416.919 kb on + strand, within Echvi_0390at 416.919 kb on + strand, within Echvi_0390at 416.919 kb on + strand, within Echvi_0390at 416.919 kb on + strand, within Echvi_0390at 416.919 kb on + strand, within Echvi_0390at 416.920 kb on - strand, within Echvi_0390at 416.920 kb on - strand, within Echvi_0390at 416.920 kb on - strand, within Echvi_0390at 416.920 kb on - strand, within Echvi_0390at 416.948 kb on - strand, within Echvi_0390at 416.963 kb on + strand, within Echvi_0390at 416.964 kb on - strand, within Echvi_0390at 416.975 kb on + strand, within Echvi_0390at 416.976 kb on - strand, within Echvi_0390at 417.062 kb on - strandat 417.062 kb on - strandat 417.146 kb on + strand, within Echvi_0391at 417.147 kb on - strand, within Echvi_0391at 417.224 kb on + strand, within Echvi_0391at 417.227 kb on + strand, within Echvi_0391at 417.230 kb on + strand, within Echvi_0391at 417.253 kb on + strand, within Echvi_0391at 417.399 kb on - strand, within Echvi_0391at 417.399 kb on - strand, within Echvi_0391at 417.406 kb on - strand, within Echvi_0391at 417.407 kb on + strand, within Echvi_0391at 417.593 kb on + strandat 417.612 kb on + strandat 417.612 kb on + strandat 417.613 kb on - strandat 417.613 kb on - strandat 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.680 kb on + strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.681 kb on - strand, within Echvi_0392at 417.697 kb on - strand, within Echvi_0392at 417.745 kb on + strand, within Echvi_0392at 417.745 kb on + strand, within Echvi_0392at 417.746 kb on - strand, within Echvi_0392at 417.746 kb on - strand, within Echvi_0392at 417.767 kb on + strand, within Echvi_0392at 417.767 kb on + strand, within Echvi_0392at 417.767 kb on + strand, within Echvi_0392at 417.768 kb on - strand, within Echvi_0392at 417.768 kb on - strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.841 kb on + strand, within Echvi_0392at 417.842 kb on - strand, within Echvi_0392at 417.842 kb on - strand, within Echvi_0392at 417.867 kb on + strand, within Echvi_0392at 417.870 kb on + strand, within Echvi_0392at 417.870 kb on + strand, within Echvi_0392at 417.871 kb on - strand, within Echvi_0392at 417.871 kb on - strand, within Echvi_0392at 417.874 kb on + strand, within Echvi_0392at 417.874 kb on + strand, within Echvi_0392at 417.874 kb on + strand, within Echvi_0392at 417.875 kb on - strand, within Echvi_0392at 417.875 kb on - strand, within Echvi_0392at 417.903 kb on + strand, within Echvi_0392at 417.904 kb on - strand, within Echvi_0392at 417.938 kb on - strand, within Echvi_0392at 417.975 kb on + strand, within Echvi_0392at 417.978 kb on + strandat 417.978 kb on + strand, within Echvi_0392at 417.979 kb on - strand, within Echvi_0392at 417.979 kb on - strand, within Echvi_0392at 418.016 kb on + strand, within Echvi_0392at 418.017 kb on - strand, within Echvi_0392at 418.017 kb on - strand, within Echvi_0392at 418.141 kb on - strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.146 kb on + strand, within Echvi_0392at 418.149 kb on + strand, within Echvi_0392at 418.150 kb on - strand, within Echvi_0392at 418.160 kb on + strand, within Echvi_0392at 418.160 kb on + strand, within Echvi_0392at 418.161 kb on - strand, within Echvi_0392at 418.233 kb on + strand, within Echvi_0392at 418.233 kb on + strand, within Echvi_0392at 418.234 kb on - strand, within Echvi_0392at 418.256 kb on - strand, within Echvi_0392at 418.278 kb on + strand, within Echvi_0392at 418.323 kb on - strand, within Echvi_0392at 418.413 kb on + strandat 418.517 kb on - strand, within Echvi_0393at 418.517 kb on - strand, within Echvi_0393at 418.517 kb on - strand, within Echvi_0393at 418.519 kb on + strand, within Echvi_0393at 418.519 kb on + strand, within Echvi_0393at 418.520 kb on - strand, within Echvi_0393at 418.520 kb on - strand, within Echvi_0393at 418.525 kb on + strand, within Echvi_0393at 418.545 kb on - strand, within Echvi_0393at 418.931 kb on + strandat 418.935 kb on + strandat 418.935 kb on + strandat 418.936 kb on - strandat 418.943 kb on + strandat 418.944 kb on - strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.067 kb on + strandat 419.096 kb on + strand, within Echvi_0395at 419.096 kb on + strand, within Echvi_0395at 419.183 kb on - strand, within Echvi_0395at 419.224 kb on + strand, within Echvi_0395

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.06 mg/ml
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416,552 + Echvi_0390 0.52 -0.5
416,556 - Echvi_0390 0.53 +1.2
416,564 + Echvi_0390 0.53 +1.1
416,565 - Echvi_0390 0.53 -0.4
416,657 + Echvi_0390 0.61 -1.4
416,658 - Echvi_0390 0.61 +1.1
416,658 - Echvi_0390 0.61 -0.2
416,713 + Echvi_0390 0.66 +0.4
416,715 + Echvi_0390 0.66 -1.3
416,716 - Echvi_0390 0.66 -0.2
416,726 - Echvi_0390 0.67 -0.1
416,848 - Echvi_0390 0.77 -0.5
416,883 - Echvi_0390 0.80 -0.5
416,907 - Echvi_0390 0.82 +0.4
416,919 + Echvi_0390 0.84 +1.6
416,919 + Echvi_0390 0.84 +0.0
416,919 + Echvi_0390 0.84 -0.1
416,919 + Echvi_0390 0.84 +0.0
416,919 + Echvi_0390 0.84 -0.3
416,920 - Echvi_0390 0.84 +0.5
416,920 - Echvi_0390 0.84 +0.2
416,920 - Echvi_0390 0.84 -1.2
416,920 - Echvi_0390 0.84 -1.1
416,948 - Echvi_0390 0.86 +0.0
416,963 + Echvi_0390 0.87 -0.4
416,964 - Echvi_0390 0.87 +0.9
416,975 + Echvi_0390 0.88 -0.5
416,976 - Echvi_0390 0.88 -0.6
417,062 - -1.7
417,062 - -0.3
417,146 + Echvi_0391 0.13 -0.2
417,147 - Echvi_0391 0.13 -0.6
417,224 + Echvi_0391 0.35 +2.0
417,227 + Echvi_0391 0.36 -0.0
417,230 + Echvi_0391 0.37 -0.4
417,253 + Echvi_0391 0.44 -0.5
417,399 - Echvi_0391 0.86 +0.2
417,399 - Echvi_0391 0.86 -0.7
417,406 - Echvi_0391 0.88 -0.4
417,407 + Echvi_0391 0.88 +0.0
417,593 + +0.1
417,612 + -1.3
417,612 + -0.2
417,613 - +0.1
417,613 - -0.2
417,680 + Echvi_0392 0.15 -0.7
417,680 + Echvi_0392 0.15 +0.9
417,680 + Echvi_0392 0.15 +0.0
417,680 + Echvi_0392 0.15 -1.2
417,680 + Echvi_0392 0.15 -0.3
417,680 + Echvi_0392 0.15 +2.0
417,681 - Echvi_0392 0.15 -0.1
417,681 - Echvi_0392 0.15 -1.4
417,681 - Echvi_0392 0.15 -2.2
417,681 - Echvi_0392 0.15 -1.5
417,697 - Echvi_0392 0.17 -0.9
417,745 + Echvi_0392 0.23 +0.7
417,745 + Echvi_0392 0.23 -0.0
417,746 - Echvi_0392 0.23 -0.9
417,746 - Echvi_0392 0.23 -1.3
417,767 + Echvi_0392 0.25 -0.5
417,767 + Echvi_0392 0.25 -0.6
417,767 + Echvi_0392 0.25 +0.3
417,768 - Echvi_0392 0.25 -0.9
417,768 - Echvi_0392 0.25 -0.3
417,841 + Echvi_0392 0.34 -1.3
417,841 + Echvi_0392 0.34 -0.3
417,841 + Echvi_0392 0.34 +1.2
417,841 + Echvi_0392 0.34 -0.4
417,842 - Echvi_0392 0.34 -1.7
417,842 - Echvi_0392 0.34 -2.4
417,867 + Echvi_0392 0.37 +0.2
417,870 + Echvi_0392 0.37 +0.4
417,870 + Echvi_0392 0.37 +0.6
417,871 - Echvi_0392 0.37 -1.0
417,871 - Echvi_0392 0.37 +0.8
417,874 + Echvi_0392 0.38 -0.8
417,874 + Echvi_0392 0.38 -1.4
417,874 + Echvi_0392 0.38 +0.2
417,875 - Echvi_0392 0.38 +2.4
417,875 - Echvi_0392 0.38 -1.0
417,903 + Echvi_0392 0.41 +0.0
417,904 - Echvi_0392 0.41 +0.4
417,938 - Echvi_0392 0.45 +0.2
417,975 + Echvi_0392 0.49 -0.3
417,978 + +0.0
417,978 + Echvi_0392 0.50 -2.1
417,979 - Echvi_0392 0.50 -0.9
417,979 - Echvi_0392 0.50 -0.3
418,016 + Echvi_0392 0.54 -0.6
418,017 - Echvi_0392 0.54 -1.0
418,017 - Echvi_0392 0.54 -0.1
418,141 - Echvi_0392 0.69 -0.5
418,146 + Echvi_0392 0.69 +0.2
418,146 + Echvi_0392 0.69 -0.7
418,146 + Echvi_0392 0.69 -2.2
418,149 + Echvi_0392 0.70 +0.5
418,150 - Echvi_0392 0.70 -0.1
418,160 + Echvi_0392 0.71 -0.1
418,160 + Echvi_0392 0.71 +0.1
418,161 - Echvi_0392 0.71 -1.4
418,233 + Echvi_0392 0.79 -0.3
418,233 + Echvi_0392 0.79 +0.3
418,234 - Echvi_0392 0.79 -1.1
418,256 - Echvi_0392 0.82 +1.1
418,278 + Echvi_0392 0.85 +1.2
418,323 - Echvi_0392 0.90 +0.2
418,413 + -0.1
418,517 - Echvi_0393 0.43 -0.6
418,517 - Echvi_0393 0.43 -1.3
418,517 - Echvi_0393 0.43 -1.5
418,519 + Echvi_0393 0.44 -0.3
418,519 + Echvi_0393 0.44 -0.1
418,520 - Echvi_0393 0.44 -1.1
418,520 - Echvi_0393 0.44 +0.6
418,525 + Echvi_0393 0.47 -0.9
418,545 - Echvi_0393 0.59 +0.2
418,931 + +1.2
418,935 + +0.2
418,935 + -0.3
418,936 - -1.2
418,943 + +0.4
418,944 - -2.2
419,067 + -0.3
419,067 + -0.6
419,067 + -0.1
419,096 + Echvi_0395 0.11 -0.1
419,096 + Echvi_0395 0.11 -1.1
419,183 - Echvi_0395 0.29 +0.8
419,224 + Echvi_0395 0.38 -0.8

Or see this region's nucleotide sequence