Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3526 and Atu3527 are separated by 61 nucleotides Atu3527 and Atu3528 are separated by 25 nucleotides Atu3528 and Atu3529 overlap by 4 nucleotides
Atu3526: Atu3526 - tRNA-Leu, at 576,115 to 576,199
Atu3526
Atu3527: Atu3527 - hypothetical protein, at 576,261 to 577,103
Atu3527
Atu3528: Atu3528 - oxidoreductase, at 577,129 to 578,118
Atu3528
Atu3529: Atu3529 - mannonate dehydratase, at 578,115 to 579,308
Atu3529
Position (kb) 577
578
579 Strain fitness (log2 ratio) -2
-1
0
1 at 576.226 kb on - strand at 576.429 kb on - strand, within Atu3527 at 576.694 kb on + strand, within Atu3527 at 576.771 kb on - strand, within Atu3527 at 576.783 kb on + strand, within Atu3527 at 576.809 kb on + strand, within Atu3527 at 576.831 kb on - strand, within Atu3527 at 576.901 kb on + strand, within Atu3527 at 576.964 kb on - strand, within Atu3527 at 576.997 kb on - strand, within Atu3527 at 577.007 kb on + strand, within Atu3527 at 577.049 kb on - strand at 577.107 kb on + strand at 577.182 kb on - strand at 577.216 kb on + strand at 577.250 kb on - strand, within Atu3528 at 577.328 kb on + strand, within Atu3528 at 577.337 kb on + strand, within Atu3528 at 577.358 kb on + strand, within Atu3528 at 577.358 kb on + strand, within Atu3528 at 577.394 kb on - strand, within Atu3528 at 577.414 kb on + strand, within Atu3528 at 577.415 kb on - strand, within Atu3528 at 577.497 kb on - strand, within Atu3528 at 577.505 kb on - strand, within Atu3528 at 577.556 kb on - strand, within Atu3528 at 577.601 kb on + strand, within Atu3528 at 577.602 kb on - strand, within Atu3528 at 577.621 kb on - strand, within Atu3528 at 577.685 kb on - strand, within Atu3528 at 577.692 kb on + strand, within Atu3528 at 577.707 kb on + strand, within Atu3528 at 577.748 kb on - strand, within Atu3528 at 577.752 kb on + strand, within Atu3528 at 577.752 kb on + strand, within Atu3528 at 577.753 kb on - strand, within Atu3528 at 577.754 kb on - strand, within Atu3528 at 577.947 kb on + strand, within Atu3528 at 577.950 kb on - strand, within Atu3528 at 578.035 kb on + strand at 578.163 kb on - strand at 578.193 kb on - strand at 578.193 kb on - strand at 578.258 kb on + strand, within Atu3529 at 578.312 kb on - strand, within Atu3529 at 578.501 kb on + strand, within Atu3529 at 578.509 kb on - strand, within Atu3529 at 578.510 kb on - strand, within Atu3529 at 578.684 kb on + strand, within Atu3529 at 578.743 kb on + strand, within Atu3529 at 578.751 kb on - strand, within Atu3529 at 578.944 kb on + strand, within Atu3529 at 579.042 kb on - strand, within Atu3529 at 579.112 kb on - strand, within Atu3529
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 576,226 - +0.0 576,429 - Atu3527 0.20 +0.2 576,694 + Atu3527 0.51 -0.5 576,771 - Atu3527 0.60 +0.2 576,783 + Atu3527 0.62 +0.9 576,809 + Atu3527 0.65 -0.2 576,831 - Atu3527 0.68 -0.6 576,901 + Atu3527 0.76 +0.2 576,964 - Atu3527 0.83 -0.1 576,997 - Atu3527 0.87 +0.3 577,007 + Atu3527 0.88 -2.2 577,049 - -0.1 577,107 + +0.4 577,182 - -0.3 577,216 + -0.5 577,250 - Atu3528 0.12 -0.0 577,328 + Atu3528 0.20 +0.3 577,337 + Atu3528 0.21 -0.6 577,358 + Atu3528 0.23 -0.3 577,358 + Atu3528 0.23 -0.5 577,394 - Atu3528 0.27 -0.4 577,414 + Atu3528 0.29 -0.8 577,415 - Atu3528 0.29 -0.4 577,497 - Atu3528 0.37 -0.6 577,505 - Atu3528 0.38 -0.1 577,556 - Atu3528 0.43 -0.7 577,601 + Atu3528 0.48 -0.8 577,602 - Atu3528 0.48 -0.3 577,621 - Atu3528 0.50 +0.6 577,685 - Atu3528 0.56 +0.1 577,692 + Atu3528 0.57 -0.6 577,707 + Atu3528 0.58 -1.5 577,748 - Atu3528 0.63 +0.5 577,752 + Atu3528 0.63 +1.1 577,752 + Atu3528 0.63 -0.1 577,753 - Atu3528 0.63 -0.2 577,754 - Atu3528 0.63 -0.2 577,947 + Atu3528 0.83 -0.4 577,950 - Atu3528 0.83 -0.6 578,035 + -0.9 578,163 - +0.1 578,193 - -0.4 578,193 - -1.2 578,258 + Atu3529 0.12 -0.5 578,312 - Atu3529 0.16 +0.3 578,501 + Atu3529 0.32 +1.5 578,509 - Atu3529 0.33 -0.7 578,510 - Atu3529 0.33 -0.3 578,684 + Atu3529 0.48 +0.4 578,743 + Atu3529 0.53 +0.4 578,751 - Atu3529 0.53 -1.2 578,944 + Atu3529 0.69 -0.2 579,042 - Atu3529 0.78 +0.4 579,112 - Atu3529 0.84 -0.6
Or see this region's nucleotide sequence