Strain Fitness in Agrobacterium fabrum C58 around Atu3041

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3040 and Atu3041 are separated by 43 nucleotidesAtu3041 and Atu3042 are separated by 115 nucleotides Atu3040: Atu3040 - hypothetical protein, at 35,164 to 36,297 Atu3040 Atu3041: Atu3041 - dipeptide ABC transporter substrate-binding protein, at 36,341 to 37,954 Atu3041 Atu3042: Atu3042 - hypothetical protein, at 38,070 to 39,146 Atu3042 Position (kb) 36 37 38Strain fitness (log2 ratio) -1 0 1at 35.362 kb on - strand, within Atu3040at 35.373 kb on + strand, within Atu3040at 35.401 kb on + strand, within Atu3040at 35.440 kb on + strand, within Atu3040at 35.448 kb on - strand, within Atu3040at 35.551 kb on - strand, within Atu3040at 35.665 kb on + strand, within Atu3040at 35.677 kb on + strand, within Atu3040at 35.680 kb on + strand, within Atu3040at 35.719 kb on + strand, within Atu3040at 35.725 kb on + strand, within Atu3040at 35.727 kb on - strand, within Atu3040at 35.733 kb on - strand, within Atu3040at 35.797 kb on + strand, within Atu3040at 35.805 kb on - strand, within Atu3040at 35.892 kb on + strand, within Atu3040at 35.989 kb on - strand, within Atu3040at 35.999 kb on - strand, within Atu3040at 36.127 kb on - strand, within Atu3040at 36.190 kb on + strandat 36.243 kb on - strandat 36.243 kb on - strandat 36.290 kb on - strandat 36.290 kb on - strandat 36.290 kb on - strandat 36.375 kb on - strandat 36.469 kb on + strandat 36.588 kb on - strand, within Atu3041at 36.634 kb on + strand, within Atu3041at 36.642 kb on + strand, within Atu3041at 36.642 kb on + strand, within Atu3041at 36.650 kb on - strand, within Atu3041at 36.650 kb on - strand, within Atu3041at 36.650 kb on - strand, within Atu3041at 36.798 kb on + strand, within Atu3041at 36.862 kb on - strand, within Atu3041at 36.918 kb on - strand, within Atu3041at 36.923 kb on + strand, within Atu3041at 36.925 kb on - strand, within Atu3041at 36.948 kb on + strand, within Atu3041at 36.995 kb on + strand, within Atu3041at 37.064 kb on + strand, within Atu3041at 37.072 kb on - strand, within Atu3041at 37.128 kb on + strand, within Atu3041at 37.176 kb on - strand, within Atu3041at 37.194 kb on - strand, within Atu3041at 37.217 kb on + strand, within Atu3041at 37.234 kb on + strand, within Atu3041at 37.235 kb on - strand, within Atu3041at 37.288 kb on + strand, within Atu3041at 37.296 kb on - strand, within Atu3041at 37.405 kb on + strand, within Atu3041at 37.455 kb on - strand, within Atu3041at 37.464 kb on - strand, within Atu3041at 37.464 kb on - strand, within Atu3041at 37.518 kb on + strand, within Atu3041at 37.526 kb on - strand, within Atu3041at 37.618 kb on + strand, within Atu3041at 37.624 kb on + strand, within Atu3041at 37.659 kb on + strand, within Atu3041at 37.677 kb on - strand, within Atu3041at 37.824 kb on - strandat 37.828 kb on + strandat 37.852 kb on + strandat 37.879 kb on + strandat 37.910 kb on + strandat 37.964 kb on + strandat 38.025 kb on - strandat 38.044 kb on + strandat 38.215 kb on - strand, within Atu3042at 38.223 kb on - strand, within Atu3042at 38.289 kb on + strand, within Atu3042at 38.330 kb on - strand, within Atu3042at 38.397 kb on + strand, within Atu3042at 38.397 kb on + strand, within Atu3042at 38.475 kb on + strand, within Atu3042at 38.681 kb on + strand, within Atu3042at 38.792 kb on + strand, within Atu3042at 38.833 kb on + strand, within Atu3042

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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35,362 - Atu3040 0.17 -0.0
35,373 + Atu3040 0.18 +1.0
35,401 + Atu3040 0.21 +0.8
35,440 + Atu3040 0.24 -0.9
35,448 - Atu3040 0.25 +0.2
35,551 - Atu3040 0.34 +0.7
35,665 + Atu3040 0.44 +0.2
35,677 + Atu3040 0.45 -0.2
35,680 + Atu3040 0.46 +0.1
35,719 + Atu3040 0.49 +0.2
35,725 + Atu3040 0.49 +0.4
35,727 - Atu3040 0.50 +0.4
35,733 - Atu3040 0.50 +0.7
35,797 + Atu3040 0.56 -0.2
35,805 - Atu3040 0.57 +0.8
35,892 + Atu3040 0.64 -0.7
35,989 - Atu3040 0.73 -0.5
35,999 - Atu3040 0.74 +0.2
36,127 - Atu3040 0.85 +0.1
36,190 + +0.1
36,243 - +0.6
36,243 - +0.6
36,290 - +1.0
36,290 - +1.5
36,290 - +0.1
36,375 - +0.1
36,469 + +0.4
36,588 - Atu3041 0.15 +0.2
36,634 + Atu3041 0.18 +0.4
36,642 + Atu3041 0.19 +0.4
36,642 + Atu3041 0.19 +0.6
36,650 - Atu3041 0.19 +0.4
36,650 - Atu3041 0.19 +0.6
36,650 - Atu3041 0.19 +0.4
36,798 + Atu3041 0.28 +0.7
36,862 - Atu3041 0.32 +0.9
36,918 - Atu3041 0.36 +0.8
36,923 + Atu3041 0.36 +0.2
36,925 - Atu3041 0.36 +0.7
36,948 + Atu3041 0.38 -0.2
36,995 + Atu3041 0.41 +0.1
37,064 + Atu3041 0.45 +1.0
37,072 - Atu3041 0.45 +0.5
37,128 + Atu3041 0.49 +1.1
37,176 - Atu3041 0.52 +0.2
37,194 - Atu3041 0.53 +0.8
37,217 + Atu3041 0.54 +0.4
37,234 + Atu3041 0.55 +0.4
37,235 - Atu3041 0.55 +0.5
37,288 + Atu3041 0.59 +0.2
37,296 - Atu3041 0.59 +0.4
37,405 + Atu3041 0.66 +0.2
37,455 - Atu3041 0.69 +0.3
37,464 - Atu3041 0.70 +0.5
37,464 - Atu3041 0.70 -0.3
37,518 + Atu3041 0.73 +0.3
37,526 - Atu3041 0.73 -0.4
37,618 + Atu3041 0.79 +0.7
37,624 + Atu3041 0.79 +0.6
37,659 + Atu3041 0.82 +1.1
37,677 - Atu3041 0.83 -0.5
37,824 - -0.6
37,828 + +0.2
37,852 + +0.4
37,879 + +0.1
37,910 + +0.7
37,964 + -0.0
38,025 - -0.1
38,044 + -0.1
38,215 - Atu3042 0.13 +0.5
38,223 - Atu3042 0.14 +0.6
38,289 + Atu3042 0.20 +0.8
38,330 - Atu3042 0.24 +0.7
38,397 + Atu3042 0.30 +0.8
38,397 + Atu3042 0.30 -0.4
38,475 + Atu3042 0.38 -0.1
38,681 + Atu3042 0.57 +0.5
38,792 + Atu3042 0.67 +0.6
38,833 + Atu3042 0.71 +0.8

Or see this region's nucleotide sequence