Strain Fitness in Agrobacterium fabrum C58 around Atu0208

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0207 and Atu0208 are separated by 206 nucleotidesAtu0208 and Atu0209 are separated by 290 nucleotides Atu0207: Atu0207 - transcriptional regulator, LysR family, at 211,567 to 212,448 Atu0207 Atu0208: Atu0208 - hypothetical protein, at 212,655 to 213,491 Atu0208 Atu0209: Atu0209 - hypothetical protein, at 213,782 to 214,888 Atu0209 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.680 kb on + strand, within Atu0207at 211.736 kb on + strand, within Atu0207at 211.771 kb on - strand, within Atu0207at 211.817 kb on - strand, within Atu0207at 211.826 kb on - strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.833 kb on + strand, within Atu0207at 211.843 kb on - strand, within Atu0207at 211.902 kb on + strand, within Atu0207at 211.911 kb on + strand, within Atu0207at 211.919 kb on - strand, within Atu0207at 211.953 kb on + strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.956 kb on - strand, within Atu0207at 211.961 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.008 kb on + strand, within Atu0207at 212.013 kb on + strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.016 kb on - strand, within Atu0207at 212.021 kb on - strand, within Atu0207at 212.064 kb on - strand, within Atu0207at 212.169 kb on + strand, within Atu0207at 212.177 kb on - strand, within Atu0207at 212.184 kb on + strand, within Atu0207at 212.187 kb on - strand, within Atu0207at 212.262 kb on + strand, within Atu0207at 212.350 kb on - strand, within Atu0207at 212.418 kb on + strandat 212.445 kb on - strandat 212.513 kb on + strandat 212.599 kb on + strandat 212.621 kb on + strandat 212.685 kb on - strandat 212.685 kb on - strandat 212.688 kb on + strandat 212.692 kb on + strandat 212.702 kb on + strandat 212.710 kb on - strandat 212.710 kb on - strandat 212.710 kb on - strandat 212.731 kb on - strandat 212.768 kb on + strand, within Atu0208at 212.795 kb on - strand, within Atu0208at 212.871 kb on + strand, within Atu0208at 213.010 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.015 kb on + strand, within Atu0208at 213.020 kb on + strand, within Atu0208at 213.052 kb on + strand, within Atu0208at 213.167 kb on - strand, within Atu0208at 213.201 kb on + strand, within Atu0208at 213.209 kb on - strand, within Atu0208at 213.225 kb on - strand, within Atu0208at 213.234 kb on + strand, within Atu0208at 213.241 kb on + strand, within Atu0208at 213.271 kb on + strand, within Atu0208at 213.271 kb on + strand, within Atu0208at 213.295 kb on + strand, within Atu0208at 213.318 kb on + strand, within Atu0208at 213.318 kb on - strand, within Atu0208at 213.323 kb on + strand, within Atu0208at 213.326 kb on - strand, within Atu0208at 213.388 kb on + strand, within Atu0208at 213.393 kb on + strand, within Atu0208at 213.396 kb on - strand, within Atu0208at 213.477 kb on + strandat 213.485 kb on + strandat 213.485 kb on + strandat 213.493 kb on - strandat 213.499 kb on + strandat 213.499 kb on + strandat 213.504 kb on + strandat 213.642 kb on - strandat 213.699 kb on - strandat 213.736 kb on - strandat 213.845 kb on + strandat 213.942 kb on + strand, within Atu0209at 213.961 kb on - strand, within Atu0209at 213.985 kb on + strand, within Atu0209at 214.157 kb on + strand, within Atu0209at 214.192 kb on + strand, within Atu0209at 214.213 kb on + strand, within Atu0209at 214.296 kb on - strand, within Atu0209at 214.312 kb on - strand, within Atu0209at 214.388 kb on + strand, within Atu0209at 214.427 kb on + strand, within Atu0209at 214.435 kb on - strand, within Atu0209at 214.435 kb on - strand, within Atu0209

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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211,680 + Atu0207 0.13 -0.1
211,736 + Atu0207 0.19 +0.3
211,771 - Atu0207 0.23 -0.2
211,817 - Atu0207 0.28 -0.2
211,826 - Atu0207 0.29 +0.1
211,833 + Atu0207 0.30 +0.2
211,833 + Atu0207 0.30 +0.2
211,843 - Atu0207 0.31 -0.3
211,902 + Atu0207 0.38 +0.2
211,911 + Atu0207 0.39 +0.0
211,919 - Atu0207 0.40 +0.4
211,953 + Atu0207 0.44 +0.4
211,956 - Atu0207 0.44 -0.0
211,956 - Atu0207 0.44 -0.1
211,961 + Atu0207 0.45 -0.2
212,008 + Atu0207 0.50 -0.6
212,008 + Atu0207 0.50 +0.6
212,013 + Atu0207 0.51 -0.0
212,016 - Atu0207 0.51 -0.7
212,016 - Atu0207 0.51 +0.2
212,016 - Atu0207 0.51 +0.3
212,016 - Atu0207 0.51 -0.3
212,021 - Atu0207 0.51 +2.2
212,064 - Atu0207 0.56 -0.8
212,169 + Atu0207 0.68 -0.3
212,177 - Atu0207 0.69 +0.0
212,184 + Atu0207 0.70 -0.2
212,187 - Atu0207 0.70 -0.1
212,262 + Atu0207 0.79 -0.9
212,350 - Atu0207 0.89 -0.3
212,418 + -1.9
212,445 - -0.2
212,513 + +1.1
212,599 + -0.4
212,621 + -0.1
212,685 - -0.9
212,685 - -0.0
212,688 + -0.3
212,692 + +0.1
212,702 + -0.1
212,710 - -0.6
212,710 - -0.2
212,710 - -0.4
212,731 - -0.0
212,768 + Atu0208 0.14 -0.1
212,795 - Atu0208 0.17 -1.1
212,871 + Atu0208 0.26 -1.1
213,010 + Atu0208 0.42 +0.0
213,015 + Atu0208 0.43 -0.8
213,015 + Atu0208 0.43 -0.3
213,015 + Atu0208 0.43 -2.4
213,020 + Atu0208 0.44 -0.8
213,052 + Atu0208 0.47 -0.5
213,167 - Atu0208 0.61 -0.0
213,201 + Atu0208 0.65 -0.6
213,209 - Atu0208 0.66 -0.2
213,225 - Atu0208 0.68 -0.4
213,234 + Atu0208 0.69 +0.2
213,241 + Atu0208 0.70 +0.0
213,271 + Atu0208 0.74 -0.6
213,271 + Atu0208 0.74 -0.3
213,295 + Atu0208 0.76 +1.0
213,318 + Atu0208 0.79 -0.1
213,318 - Atu0208 0.79 -0.5
213,323 + Atu0208 0.80 -0.5
213,326 - Atu0208 0.80 -0.2
213,388 + Atu0208 0.88 -0.5
213,393 + Atu0208 0.88 +0.0
213,396 - Atu0208 0.89 -0.3
213,477 + +0.5
213,485 + -0.3
213,485 + -0.5
213,493 - +0.3
213,499 + +0.5
213,499 + -0.1
213,504 + -0.0
213,642 - +0.2
213,699 - -0.0
213,736 - +1.8
213,845 + -0.5
213,942 + Atu0209 0.14 +0.8
213,961 - Atu0209 0.16 +1.7
213,985 + Atu0209 0.18 -0.4
214,157 + Atu0209 0.34 +1.3
214,192 + Atu0209 0.37 -0.1
214,213 + Atu0209 0.39 -0.2
214,296 - Atu0209 0.46 -0.0
214,312 - Atu0209 0.48 -0.6
214,388 + Atu0209 0.55 +0.9
214,427 + Atu0209 0.58 +0.2
214,435 - Atu0209 0.59 -0.0
214,435 - Atu0209 0.59 +0.0

Or see this region's nucleotide sequence