Strain Fitness in Pseudomonas sp. RS175 around PFR28_05035

Experiment: Malonic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_05034 and PFR28_05035 overlap by 4 nucleotidesPFR28_05035 and PFR28_05036 overlap by 4 nucleotidesPFR28_05036 and PFR28_05037 are separated by 9 nucleotidesPFR28_05037 and PFR28_05038 overlap by 20 nucleotides PFR28_05034: PFR28_05034 - D-alanine--D-alanyl carrier protein ligase, at 5,747,683 to 5,749,362 _05034 PFR28_05035: PFR28_05035 - hypothetical protein, at 5,749,359 to 5,749,904 _05035 PFR28_05036: PFR28_05036 - Acyl carrier protein, at 5,749,901 to 5,750,155 _05036 PFR28_05037: PFR28_05037 - hypothetical protein, at 5,750,165 to 5,750,422 _05037 PFR28_05038: PFR28_05038 - hypothetical protein, at 5,750,403 to 5,751,212 _05038 Position (kb) 5749 5750Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5748.424 kb on - strand, within PFR28_05034at 5748.424 kb on - strand, within PFR28_05034at 5748.445 kb on + strand, within PFR28_05034at 5748.449 kb on + strand, within PFR28_05034at 5748.449 kb on + strand, within PFR28_05034at 5748.449 kb on + strand, within PFR28_05034at 5748.449 kb on + strand, within PFR28_05034at 5748.450 kb on - strand, within PFR28_05034at 5748.788 kb on - strand, within PFR28_05034at 5748.839 kb on + strand, within PFR28_05034at 5748.840 kb on - strand, within PFR28_05034at 5748.840 kb on - strand, within PFR28_05034at 5748.840 kb on - strand, within PFR28_05034at 5749.035 kb on + strand, within PFR28_05034at 5749.036 kb on - strand, within PFR28_05034at 5749.036 kb on - strand, within PFR28_05034at 5749.042 kb on + strand, within PFR28_05034at 5749.042 kb on + strand, within PFR28_05034at 5749.042 kb on + strand, within PFR28_05034at 5749.043 kb on - strand, within PFR28_05034at 5749.043 kb on - strand, within PFR28_05034at 5749.043 kb on - strand, within PFR28_05034at 5749.043 kb on - strand, within PFR28_05034at 5749.043 kb on - strand, within PFR28_05034at 5749.043 kb on - strand, within PFR28_05034at 5749.375 kb on - strandat 5749.387 kb on - strandat 5749.444 kb on + strand, within PFR28_05035at 5749.445 kb on - strand, within PFR28_05035at 5749.445 kb on - strand, within PFR28_05035at 5749.445 kb on - strand, within PFR28_05035at 5749.503 kb on - strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.546 kb on + strand, within PFR28_05035at 5749.547 kb on - strand, within PFR28_05035at 5749.547 kb on - strand, within PFR28_05035at 5749.547 kb on - strand, within PFR28_05035at 5749.547 kb on - strand, within PFR28_05035at 5749.547 kb on - strand, within PFR28_05035at 5749.547 kb on - strand, within PFR28_05035at 5749.616 kb on - strand, within PFR28_05035at 5749.844 kb on - strand, within PFR28_05035at 5749.844 kb on - strand, within PFR28_05035at 5749.858 kb on + strandat 5749.926 kb on + strandat 5749.927 kb on - strand, within PFR28_05036at 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.443 kb on + strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.444 kb on - strandat 5750.446 kb on + strandat 5750.446 kb on + strandat 5750.446 kb on + strandat 5750.447 kb on - strandat 5750.447 kb on - strandat 5750.447 kb on - strandat 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.520 kb on + strand, within PFR28_05038at 5750.521 kb on - strand, within PFR28_05038at 5750.521 kb on - strand, within PFR28_05038at 5750.572 kb on + strand, within PFR28_05038at 5750.627 kb on + strand, within PFR28_05038at 5750.794 kb on + strand, within PFR28_05038at 5750.794 kb on + strand, within PFR28_05038at 5750.794 kb on + strand, within PFR28_05038at 5750.795 kb on - strand, within PFR28_05038at 5750.795 kb on - strand, within PFR28_05038at 5750.795 kb on - strand, within PFR28_05038

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C) 10 mM
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5,748,424 - PFR28_05034 0.44 +0.3
5,748,424 - PFR28_05034 0.44 -0.6
5,748,445 + PFR28_05034 0.45 -2.4
5,748,449 + PFR28_05034 0.46 +0.3
5,748,449 + PFR28_05034 0.46 +1.4
5,748,449 + PFR28_05034 0.46 -1.4
5,748,449 + PFR28_05034 0.46 -0.0
5,748,450 - PFR28_05034 0.46 +1.5
5,748,788 - PFR28_05034 0.66 -0.0
5,748,839 + PFR28_05034 0.69 +1.5
5,748,840 - PFR28_05034 0.69 -0.2
5,748,840 - PFR28_05034 0.69 -0.3
5,748,840 - PFR28_05034 0.69 -0.5
5,749,035 + PFR28_05034 0.80 -0.7
5,749,036 - PFR28_05034 0.81 +0.7
5,749,036 - PFR28_05034 0.81 -1.1
5,749,042 + PFR28_05034 0.81 -0.1
5,749,042 + PFR28_05034 0.81 -0.2
5,749,042 + PFR28_05034 0.81 -0.6
5,749,043 - PFR28_05034 0.81 -1.4
5,749,043 - PFR28_05034 0.81 +2.5
5,749,043 - PFR28_05034 0.81 -1.4
5,749,043 - PFR28_05034 0.81 +0.4
5,749,043 - PFR28_05034 0.81 -0.7
5,749,043 - PFR28_05034 0.81 -0.1
5,749,375 - -1.2
5,749,387 - +0.9
5,749,444 + PFR28_05035 0.16 -0.2
5,749,445 - PFR28_05035 0.16 +0.3
5,749,445 - PFR28_05035 0.16 +0.2
5,749,445 - PFR28_05035 0.16 +0.5
5,749,503 - PFR28_05035 0.26 +0.5
5,749,546 + PFR28_05035 0.34 -1.0
5,749,546 + PFR28_05035 0.34 +1.4
5,749,546 + PFR28_05035 0.34 -1.4
5,749,546 + PFR28_05035 0.34 +0.9
5,749,546 + PFR28_05035 0.34 +0.1
5,749,546 + PFR28_05035 0.34 +0.4
5,749,546 + PFR28_05035 0.34 -1.6
5,749,546 + PFR28_05035 0.34 +0.2
5,749,546 + PFR28_05035 0.34 +1.0
5,749,547 - PFR28_05035 0.34 +1.7
5,749,547 - PFR28_05035 0.34 +1.1
5,749,547 - PFR28_05035 0.34 +2.5
5,749,547 - PFR28_05035 0.34 +0.8
5,749,547 - PFR28_05035 0.34 +0.3
5,749,547 - PFR28_05035 0.34 +0.3
5,749,616 - PFR28_05035 0.47 +1.2
5,749,844 - PFR28_05035 0.89 +0.6
5,749,844 - PFR28_05035 0.89 +1.2
5,749,858 + +1.9
5,749,926 + -0.4
5,749,927 - PFR28_05036 0.10 +1.1
5,750,443 + +0.4
5,750,443 + +0.6
5,750,443 + -1.9
5,750,443 + -0.6
5,750,443 + +1.0
5,750,443 + +0.0
5,750,443 + +0.1
5,750,443 + -0.4
5,750,443 + +1.2
5,750,443 + +0.3
5,750,443 + +2.0
5,750,444 - +1.2
5,750,444 - +0.9
5,750,444 - +0.8
5,750,444 - -0.7
5,750,444 - +0.3
5,750,444 - +0.7
5,750,444 - -0.4
5,750,444 - +1.1
5,750,444 - -0.9
5,750,444 - +0.7
5,750,444 - +0.9
5,750,444 - +0.2
5,750,444 - +0.5
5,750,444 - -0.2
5,750,444 - +0.5
5,750,446 + -0.7
5,750,446 + -1.1
5,750,446 + -1.1
5,750,447 - +0.5
5,750,447 - +1.5
5,750,447 - +1.0
5,750,520 + PFR28_05038 0.14 +0.3
5,750,520 + PFR28_05038 0.14 +0.1
5,750,520 + PFR28_05038 0.14 -3.7
5,750,520 + PFR28_05038 0.14 -0.1
5,750,520 + PFR28_05038 0.14 +0.5
5,750,520 + PFR28_05038 0.14 +0.2
5,750,520 + PFR28_05038 0.14 +1.1
5,750,520 + PFR28_05038 0.14 +0.2
5,750,520 + PFR28_05038 0.14 -1.3
5,750,521 - PFR28_05038 0.15 +0.8
5,750,521 - PFR28_05038 0.15 -2.2
5,750,572 + PFR28_05038 0.21 -0.3
5,750,627 + PFR28_05038 0.28 -0.1
5,750,794 + PFR28_05038 0.48 +1.1
5,750,794 + PFR28_05038 0.48 +1.0
5,750,794 + PFR28_05038 0.48 +0.7
5,750,795 - PFR28_05038 0.48 +0.9
5,750,795 - PFR28_05038 0.48 +0.6
5,750,795 - PFR28_05038 0.48 -0.5

Or see this region's nucleotide sequence