Strain Fitness in Pseudomonas sp. RS175 around PFR28_04564

Experiment: Malonic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Malonic (C) 10 mM
5,213,193	+		PFR28_04563	0.58	+1.5
5,213,194	-		PFR28_04563	0.58	+0.4
5,213,255	+		PFR28_04563	0.61	+0.1
5,213,255	+		PFR28_04563	0.61	+0.1
5,213,270	+		PFR28_04563	0.61	-0.6
5,213,270	+		PFR28_04563	0.61	-2.9
5,213,270	+		PFR28_04563	0.61	-0.4
5,213,270	+		PFR28_04563	0.61	+0.5
5,213,270	+		PFR28_04563	0.61	-0.8
5,213,270	+		PFR28_04563	0.61	+2.0
5,213,271	-		PFR28_04563	0.61	-0.8
5,213,302	+		PFR28_04563	0.63	-0.1
5,213,302	+		PFR28_04563	0.63	-1.1
5,213,302	+		PFR28_04563	0.63	-0.7
5,213,302	+		PFR28_04563	0.63	+0.9
5,213,303	-		PFR28_04563	0.63	-0.0
5,213,303	-		PFR28_04563	0.63	-0.2
5,213,303	-		PFR28_04563	0.63	+0.3
5,213,303	-		PFR28_04563	0.63	+0.0
5,213,303	-		PFR28_04563	0.63	-1.2
5,213,303	-		PFR28_04563	0.63	-0.0
5,213,303	-		PFR28_04563	0.63	-1.6
5,213,412	+		PFR28_04563	0.68	+2.5
5,213,412	+		PFR28_04563	0.68	+0.0
5,213,412	+		PFR28_04563	0.68	-0.1
5,213,412	+		PFR28_04563	0.68	-0.5
5,213,412	+		PFR28_04563	0.68	+1.2
5,213,413	-		PFR28_04563	0.68	-0.2
5,213,413	-		PFR28_04563	0.68	+0.5
5,213,432	+		PFR28_04563	0.69	-0.5
5,213,432	+		PFR28_04563	0.69	+1.6
5,213,432	+		PFR28_04563	0.69	+0.6
5,213,432	+		PFR28_04563	0.69	+0.1
5,213,433	-		PFR28_04563	0.69	+0.4
5,213,433	-		PFR28_04563	0.69	+0.7
5,213,433	-		PFR28_04563	0.69	+0.2
5,213,433	-		PFR28_04563	0.69	+1.3
5,213,433	-		PFR28_04563	0.69	+0.7
5,213,433	-		PFR28_04563	0.69	+0.6
5,213,466	+		PFR28_04563	0.70	+0.2
5,213,466	+		PFR28_04563	0.70	+0.6
5,213,467	-		PFR28_04563	0.70	+0.7
5,213,572	-		PFR28_04563	0.75	+0.4
5,213,607	+		PFR28_04563	0.76	+0.3
5,213,607	+		PFR28_04563	0.76	+2.2
5,213,607	+		PFR28_04563	0.76	+0.0
5,213,607	+		PFR28_04563	0.76	+0.5
5,213,608	-		PFR28_04563	0.76	+0.9
5,213,608	-		PFR28_04563	0.76	-2.5
5,213,608	-		PFR28_04563	0.76	-2.7
5,213,608	-		PFR28_04563	0.76	+0.8
5,213,608	-		PFR28_04563	0.76	+0.7
5,213,620	-		PFR28_04563	0.77	+0.6
5,213,620	-		PFR28_04563	0.77	-1.5
5,213,704	-		PFR28_04563	0.81	+1.3
5,213,859	+		PFR28_04563	0.88	+0.8
5,213,859	+		PFR28_04563	0.88	+0.5
5,213,859	+		PFR28_04563	0.88	+0.7
5,213,860	-		PFR28_04563	0.88	+0.3
5,213,860	-		PFR28_04563	0.88	+0.5
5,213,860	-		PFR28_04563	0.88	+0.1
5,214,285	+				-1.6
5,214,286	-				-1.1
5,214,286	-				-4.0
5,214,286	-				-4.0
5,214,297	+		PFR28_04564	0.11	-1.0
5,214,297	+		PFR28_04564	0.11	-2.4
5,214,330	+		PFR28_04564	0.14	-1.2
5,214,331	-		PFR28_04564	0.14	-3.5
5,214,331	-		PFR28_04564	0.14	-2.4
5,214,331	-		PFR28_04564	0.14	-0.5
5,214,331	-		PFR28_04564	0.14	-2.5
5,214,334	+		PFR28_04564	0.15	-4.0
5,214,334	+		PFR28_04564	0.15	-2.0
5,214,334	+		PFR28_04564	0.15	-3.7
5,214,334	+		PFR28_04564	0.15	-3.0
5,214,334	+		PFR28_04564	0.15	-1.5
5,214,334	+		PFR28_04564	0.15	+0.5
5,214,334	+		PFR28_04564	0.15	-1.4
5,214,334	+		PFR28_04564	0.15	-2.2
5,214,334	+		PFR28_04564	0.15	-1.9
5,214,334	+		PFR28_04564	0.15	-1.0
5,214,334	+		PFR28_04564	0.15	-2.6
5,214,334	+		PFR28_04564	0.15	-1.9
5,214,334	+		PFR28_04564	0.15	-1.3
5,214,334	+		PFR28_04564	0.15	-1.4
5,214,334	+		PFR28_04564	0.15	-3.1
5,214,334	+		PFR28_04564	0.15	-3.3
5,214,334	+		PFR28_04564	0.15	-2.4
5,214,334	+		PFR28_04564	0.15	-0.3
5,214,334	+		PFR28_04564	0.15	-2.4
5,214,334	+		PFR28_04564	0.15	-1.0
5,214,335	-		PFR28_04564	0.15	-2.7
5,214,335	-		PFR28_04564	0.15	-2.0
5,214,335	-		PFR28_04564	0.15	-2.2
5,214,335	-		PFR28_04564	0.15	-1.5
5,214,335	-		PFR28_04564	0.15	-3.8
5,214,335	-		PFR28_04564	0.15	-0.1
5,214,335	-		PFR28_04564	0.15	-3.1
5,214,335	-		PFR28_04564	0.15	-0.9
5,214,335	-		PFR28_04564	0.15	-2.5
5,214,335	-		PFR28_04564	0.15	-2.8
5,214,335	-		PFR28_04564	0.15	-1.4
5,214,335	-		PFR28_04564	0.15	-3.2
5,214,335	-		PFR28_04564	0.15	-0.9
5,214,335	-		PFR28_04564	0.15	-2.3
5,214,354	+		PFR28_04564	0.17	-0.8
5,214,354	+		PFR28_04564	0.17	-4.1
5,214,354	+		PFR28_04564	0.17	-1.2
5,214,354	+		PFR28_04564	0.17	-4.7
5,214,354	+		PFR28_04564	0.17	-1.3
5,214,354	+		PFR28_04564	0.17	-3.0
5,214,576	+		PFR28_04564	0.39	-0.4
5,214,577	-		PFR28_04564	0.39	+0.8
5,214,735	+		PFR28_04564	0.55	-0.7
5,214,735	+		PFR28_04564	0.55	-0.6
5,214,736	-		PFR28_04564	0.55	-1.6
5,214,765	+		PFR28_04564	0.58	-3.0
5,214,765	+		PFR28_04564	0.58	-0.8
5,214,765	+		PFR28_04564	0.58	-0.0
5,214,765	+		PFR28_04564	0.58	-0.9
5,214,765	+		PFR28_04564	0.58	-0.7
5,214,765	+		PFR28_04564	0.58	-3.7
5,214,766	-		PFR28_04564	0.58	-3.3
5,214,846	+		PFR28_04564	0.66	+0.4
5,214,846	+		PFR28_04564	0.66	-3.4
5,214,846	+		PFR28_04564	0.66	-3.1
5,214,847	-		PFR28_04564	0.67	-1.4
5,214,847	-		PFR28_04564	0.67	-3.7
5,214,847	-		PFR28_04564	0.67	-5.1
5,214,924	+		PFR28_04564	0.74	-1.7
5,214,924	+		PFR28_04564	0.74	-2.1
5,214,924	+		PFR28_04564	0.74	-3.5
5,214,924	+		PFR28_04564	0.74	-2.2
5,214,925	-		PFR28_04564	0.74	-2.1
5,214,925	-		PFR28_04564	0.74	-1.5
5,214,925	-		PFR28_04564	0.74	-3.0
5,214,951	+		PFR28_04564	0.77	-3.2
5,215,247	+				-3.7
5,215,247	+				-4.9
5,215,247	+				-2.9
5,215,247	+				-2.4
5,215,247	+				-0.4
5,215,248	-				-1.6
5,215,248	-				-1.7
5,215,248	-				-0.6
5,215,248	-				+0.6
5,215,322	+				-3.1
5,215,322	+				-2.7
5,215,323	-				-0.9
5,215,483	+		PFR28_04565	0.25	-3.9
5,215,483	+		PFR28_04565	0.25	-2.7
5,215,483	+		PFR28_04565	0.25	-1.0
5,215,484	-		PFR28_04565	0.25	-1.4
5,215,484	-		PFR28_04565	0.25	-1.8
5,215,484	-		PFR28_04565	0.25	-0.2
5,215,484	-		PFR28_04565	0.25	-1.6
5,215,500	+		PFR28_04565	0.27	-4.2
5,215,500	+		PFR28_04565	0.27	-4.4
5,215,500	+		PFR28_04565	0.27	-3.2
5,215,500	+		PFR28_04565	0.27	-0.4
5,215,501	-		PFR28_04565	0.27	-4.0
5,215,501	-		PFR28_04565	0.27	-1.5
5,215,681	+		PFR28_04565	0.46	-3.2
5,215,681	+		PFR28_04565	0.46	+0.1
5,215,681	+		PFR28_04565	0.46	-0.3
5,215,681	+		PFR28_04565	0.46	-2.3
5,215,682	-		PFR28_04565	0.46	-3.4
5,215,682	-		PFR28_04565	0.46	-2.4
5,215,690	+		PFR28_04565	0.47	-0.9
5,215,691	-		PFR28_04565	0.47	-2.0
5,215,691	-		PFR28_04565	0.47	-3.9
5,215,864	+		PFR28_04565	0.66	-3.3
5,215,864	+		PFR28_04565	0.66	-1.3
5,215,906	+		PFR28_04565	0.70	-2.1
5,215,906	+		PFR28_04565	0.70	+0.3
5,215,906	+		PFR28_04565	0.70	-0.6
5,215,906	+		PFR28_04565	0.70	-1.5
5,215,907	-		PFR28_04565	0.71	-1.5
5,215,907	-		PFR28_04565	0.71	-3.1
5,215,907	-		PFR28_04565	0.71	-3.3
5,215,912	+		PFR28_04565	0.71	-3.2
5,215,912	+		PFR28_04565	0.71	-4.0
5,215,912	+		PFR28_04565	0.71	+0.6
5,215,912	+		PFR28_04565	0.71	-4.5
5,215,912	+		PFR28_04565	0.71	-2.1
5,215,912	+		PFR28_04565	0.71	-1.0
5,215,912	+		PFR28_04565	0.71	-3.3
5,215,912	+		PFR28_04565	0.71	-3.4
5,215,912	+		PFR28_04565	0.71	-1.6
5,215,912	+		PFR28_04565	0.71	-1.0
5,215,912	+		PFR28_04565	0.71	+0.4
5,215,912	+		PFR28_04565	0.71	-0.9
5,215,912	+		PFR28_04565	0.71	-4.4
5,215,912	+		PFR28_04565	0.71	-3.7
5,215,912	+		PFR28_04565	0.71	-1.6
5,215,913	-		PFR28_04565	0.71	-1.8
5,215,913	-		PFR28_04565	0.71	-2.9
5,215,913	-		PFR28_04565	0.71	-3.6
5,215,913	-		PFR28_04565	0.71	-4.7
5,215,913	-		PFR28_04565	0.71	-3.9
5,215,913	-		PFR28_04565	0.71	-2.9
5,215,913	-		PFR28_04565	0.71	-3.5
5,215,913	-		PFR28_04565	0.71	-1.9
5,215,913	-		PFR28_04565	0.71	-3.3
5,215,913	-		PFR28_04565	0.71	-4.3
5,215,913	-		PFR28_04565	0.71	-0.6
5,215,913	-		PFR28_04565	0.71	-2.6
5,215,913	-		PFR28_04565	0.71	-1.5
5,215,913	-		PFR28_04565	0.71	-1.5
5,215,913	-		PFR28_04565	0.71	-2.1
5,215,913	-		PFR28_04565	0.71	-1.4
5,215,913	-		PFR28_04565	0.71	-2.9
5,215,913	-		PFR28_04565	0.71	-2.2
5,216,098	+				-4.1
5,216,098	+				-3.2
5,216,099	-				-0.6
5,216,110	+				-2.8
5,216,110	+				-0.9