Strain Fitness in Pseudomonas sp. RS175 around PFR28_00234

Experiment: Malonic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00233 and PFR28_00234 are separated by 135 nucleotidesPFR28_00234 and PFR28_00235 are separated by 76 nucleotides PFR28_00233: PFR28_00233 - HTH-type transcriptional activator RhaS, at 259,557 to 260,444 _00233 PFR28_00234: PFR28_00234 - hypothetical protein, at 260,580 to 261,482 _00234 PFR28_00235: PFR28_00235 - Glyoxylate/hydroxypyruvate reductase B, at 261,559 to 262,530 _00235 Position (kb) 260 261 262Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 259.591 kb on + strandat 259.701 kb on + strand, within PFR28_00233at 259.701 kb on + strand, within PFR28_00233at 259.702 kb on - strand, within PFR28_00233at 259.702 kb on - strand, within PFR28_00233at 259.702 kb on - strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.741 kb on + strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.742 kb on - strand, within PFR28_00233at 259.793 kb on - strand, within PFR28_00233at 259.805 kb on + strand, within PFR28_00233at 259.806 kb on - strand, within PFR28_00233at 259.806 kb on - strand, within PFR28_00233at 259.806 kb on - strand, within PFR28_00233at 259.806 kb on - strand, within PFR28_00233at 259.806 kb on - strand, within PFR28_00233at 259.806 kb on - strand, within PFR28_00233at 259.861 kb on + strand, within PFR28_00233at 259.861 kb on + strand, within PFR28_00233at 259.861 kb on + strand, within PFR28_00233at 259.861 kb on + strand, within PFR28_00233at 259.862 kb on - strand, within PFR28_00233at 259.862 kb on - strand, within PFR28_00233at 259.862 kb on - strand, within PFR28_00233at 259.912 kb on - strand, within PFR28_00233at 260.143 kb on + strand, within PFR28_00233at 260.143 kb on + strand, within PFR28_00233at 260.144 kb on - strand, within PFR28_00233at 260.144 kb on - strand, within PFR28_00233at 260.144 kb on - strand, within PFR28_00233at 260.144 kb on - strand, within PFR28_00233at 260.265 kb on - strand, within PFR28_00233at 260.278 kb on + strand, within PFR28_00233at 260.279 kb on - strand, within PFR28_00233at 260.279 kb on - strand, within PFR28_00233at 260.311 kb on + strand, within PFR28_00233at 260.311 kb on + strand, within PFR28_00233at 260.312 kb on - strand, within PFR28_00233at 260.312 kb on - strand, within PFR28_00233at 260.312 kb on - strand, within PFR28_00233at 260.377 kb on + strandat 260.377 kb on + strandat 260.469 kb on + strandat 260.469 kb on + strandat 260.470 kb on - strandat 260.470 kb on - strandat 260.477 kb on - strandat 260.521 kb on - strandat 260.595 kb on + strandat 260.595 kb on + strandat 260.595 kb on + strandat 260.596 kb on - strandat 260.608 kb on + strandat 260.609 kb on - strandat 260.609 kb on - strandat 260.609 kb on - strandat 260.609 kb on - strandat 260.921 kb on + strand, within PFR28_00234at 261.206 kb on + strand, within PFR28_00234at 261.207 kb on - strand, within PFR28_00234at 261.207 kb on - strand, within PFR28_00234at 261.213 kb on + strand, within PFR28_00234at 261.213 kb on + strand, within PFR28_00234at 261.213 kb on + strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.214 kb on - strand, within PFR28_00234at 261.231 kb on + strand, within PFR28_00234at 261.232 kb on - strand, within PFR28_00234at 261.271 kb on - strand, within PFR28_00234at 261.312 kb on + strand, within PFR28_00234at 261.312 kb on + strand, within PFR28_00234at 261.312 kb on + strand, within PFR28_00234at 261.546 kb on + strandat 261.560 kb on + strandat 261.560 kb on + strandat 261.560 kb on + strandat 261.743 kb on + strand, within PFR28_00235at 261.743 kb on + strand, within PFR28_00235at 261.743 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.254 kb on + strand, within PFR28_00235at 262.255 kb on - strand, within PFR28_00235at 262.280 kb on + strand, within PFR28_00235at 262.281 kb on - strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.292 kb on + strand, within PFR28_00235at 262.293 kb on - strand, within PFR28_00235at 262.301 kb on + strand, within PFR28_00235at 262.302 kb on - strand, within PFR28_00235

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C) 10 mM
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259,591 + -0.9
259,701 + PFR28_00233 0.16 -0.7
259,701 + PFR28_00233 0.16 -1.2
259,702 - PFR28_00233 0.16 -1.2
259,702 - PFR28_00233 0.16 -0.2
259,702 - PFR28_00233 0.16 +0.1
259,741 + PFR28_00233 0.21 -0.7
259,741 + PFR28_00233 0.21 +1.3
259,741 + PFR28_00233 0.21 -1.2
259,741 + PFR28_00233 0.21 -0.3
259,741 + PFR28_00233 0.21 +1.4
259,741 + PFR28_00233 0.21 -1.3
259,741 + PFR28_00233 0.21 +0.1
259,741 + PFR28_00233 0.21 +0.5
259,742 - PFR28_00233 0.21 +0.5
259,742 - PFR28_00233 0.21 -2.1
259,742 - PFR28_00233 0.21 -1.3
259,742 - PFR28_00233 0.21 +0.1
259,742 - PFR28_00233 0.21 -1.0
259,742 - PFR28_00233 0.21 +0.7
259,742 - PFR28_00233 0.21 +0.0
259,742 - PFR28_00233 0.21 +0.9
259,793 - PFR28_00233 0.27 -0.6
259,805 + PFR28_00233 0.28 -0.5
259,806 - PFR28_00233 0.28 +0.4
259,806 - PFR28_00233 0.28 -0.5
259,806 - PFR28_00233 0.28 +1.5
259,806 - PFR28_00233 0.28 +0.3
259,806 - PFR28_00233 0.28 +0.5
259,806 - PFR28_00233 0.28 -1.6
259,861 + PFR28_00233 0.34 -1.3
259,861 + PFR28_00233 0.34 -1.0
259,861 + PFR28_00233 0.34 -0.0
259,861 + PFR28_00233 0.34 -1.9
259,862 - PFR28_00233 0.34 -1.5
259,862 - PFR28_00233 0.34 -0.9
259,862 - PFR28_00233 0.34 +0.1
259,912 - PFR28_00233 0.40 -1.0
260,143 + PFR28_00233 0.66 +0.6
260,143 + PFR28_00233 0.66 +0.7
260,144 - PFR28_00233 0.66 -2.8
260,144 - PFR28_00233 0.66 -0.3
260,144 - PFR28_00233 0.66 +0.3
260,144 - PFR28_00233 0.66 +0.3
260,265 - PFR28_00233 0.80 +0.6
260,278 + PFR28_00233 0.81 -0.2
260,279 - PFR28_00233 0.81 -0.9
260,279 - PFR28_00233 0.81 -0.4
260,311 + PFR28_00233 0.85 -1.0
260,311 + PFR28_00233 0.85 +0.6
260,312 - PFR28_00233 0.85 +0.7
260,312 - PFR28_00233 0.85 -1.2
260,312 - PFR28_00233 0.85 +0.3
260,377 + +0.5
260,377 + +0.1
260,469 + +0.0
260,469 + -0.7
260,470 - -0.1
260,470 - +0.0
260,477 - +0.3
260,521 - +0.8
260,595 + -0.2
260,595 + +0.6
260,595 + +1.0
260,596 - +1.8
260,608 + +1.4
260,609 - -1.6
260,609 - -0.6
260,609 - -0.0
260,609 - -0.3
260,921 + PFR28_00234 0.38 +0.8
261,206 + PFR28_00234 0.69 -1.0
261,207 - PFR28_00234 0.69 -0.8
261,207 - PFR28_00234 0.69 +0.5
261,213 + PFR28_00234 0.70 -1.0
261,213 + PFR28_00234 0.70 -1.7
261,213 + PFR28_00234 0.70 +0.1
261,214 - PFR28_00234 0.70 -0.5
261,214 - PFR28_00234 0.70 -1.1
261,214 - PFR28_00234 0.70 +1.3
261,214 - PFR28_00234 0.70 -0.5
261,231 + PFR28_00234 0.72 -1.0
261,232 - PFR28_00234 0.72 -1.1
261,271 - PFR28_00234 0.77 -1.3
261,312 + PFR28_00234 0.81 +0.1
261,312 + PFR28_00234 0.81 -1.2
261,312 + PFR28_00234 0.81 -0.3
261,546 + +0.5
261,560 + +0.7
261,560 + -0.5
261,560 + +1.3
261,743 + PFR28_00235 0.19 +0.5
261,743 + PFR28_00235 0.19 -0.1
261,743 + PFR28_00235 0.19 -0.7
262,254 + PFR28_00235 0.72 -1.1
262,254 + PFR28_00235 0.72 +0.3
262,254 + PFR28_00235 0.72 -1.7
262,254 + PFR28_00235 0.72 +1.3
262,255 - PFR28_00235 0.72 -1.1
262,280 + PFR28_00235 0.74 +0.9
262,281 - PFR28_00235 0.74 -0.5
262,292 + PFR28_00235 0.75 +0.3
262,292 + PFR28_00235 0.75 -0.6
262,292 + PFR28_00235 0.75 -2.7
262,292 + PFR28_00235 0.75 +0.4
262,292 + PFR28_00235 0.75 -0.2
262,293 - PFR28_00235 0.76 +0.3
262,301 + PFR28_00235 0.76 +0.8
262,302 - PFR28_00235 0.76 +1.1

Or see this region's nucleotide sequence