Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4528

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
5,411,183	-		Echvi_4526	0.63	-0.0
5,411,239	-		Echvi_4526	0.78	-0.4
5,411,239	-		Echvi_4526	0.78	-0.5
5,411,259	+		Echvi_4526	0.83	-1.3
5,411,263	+		Echvi_4526	0.85	+1.1
5,411,323	+				+1.4
5,411,323	+				-0.4
5,411,324	-				+0.8
5,411,324	-				+0.9
5,411,326	+				-0.2
5,411,326	+				-0.2
5,411,326	+				-1.7
5,411,327	-				+0.5
5,411,328	+				-1.4
5,411,329	-				-0.7
5,411,329	-				-0.0
5,411,329	-				+0.5
5,411,329	-				-0.4
5,411,329	-				-0.3
5,411,330	+				-0.3
5,411,330	+				-1.2
5,411,330	+				-0.6
5,411,330	+				-0.3
5,411,331	-				+1.0
5,411,331	-				+0.2
5,411,331	-				+0.1
5,411,331	-				+0.6
5,411,331	-				+0.3
5,411,331	-				-0.0
5,411,331	-				-0.2
5,411,331	-				-0.2
5,411,335	-				+0.2
5,411,369	-		Echvi_4527	0.29	-0.1
5,411,397	+		Echvi_4527	0.45	+0.5
5,411,413	+		Echvi_4527	0.54	+0.3
5,411,427	-		Echvi_4527	0.63	-0.3
5,411,473	-		Echvi_4527	0.89	-0.2
5,411,498	+				+0.3
5,411,499	-				-0.2
5,411,499	-				-0.1
5,411,499	-				+0.1
5,411,499	-				-1.2
5,411,502	+				-0.8
5,411,502	+				-0.9
5,411,502	+				-0.4
5,411,503	-				-0.1
5,411,503	-				+0.1
5,411,505	+				+0.3
5,411,505	+				-1.5
5,411,505	+				+0.4
5,411,505	+				+0.6
5,411,506	-				-0.1
5,411,506	-				+0.3
5,411,510	-				+1.2
5,411,510	-				-0.1
5,411,510	-				+1.2
5,411,513	+				-0.2
5,411,513	+				-0.2
5,411,514	-				+0.7
5,411,514	-				-0.6
5,411,514	-				+0.5
5,411,514	-				-0.0
5,411,514	-				+0.2
5,411,514	-				-0.3
5,411,515	+				-0.3
5,411,516	-				+0.5
5,411,516	-				+0.8
5,411,516	-				+0.1
5,411,516	-				+0.6
5,411,527	+				+0.1
5,411,528	-				+1.3
5,411,528	-				+0.2
5,411,528	-				-0.8
5,411,647	-				-0.0
5,411,647	-				+0.4
5,411,681	+				+0.1
5,411,747	+				+0.5
5,411,747	+				-0.2
5,411,748	-				-1.9
5,411,752	+				+0.3
5,411,752	+				-0.6
5,411,753	-				+1.5
5,411,758	-				+0.9
5,411,758	-				+1.6
5,411,771	+				-1.8
5,411,775	+				+0.3
5,411,775	+				+0.1
5,411,781	+				-1.6
5,411,838	+				-0.1
5,411,838	+				+0.1
5,411,839	-				-0.2
5,411,839	-				+0.3
5,411,866	+				-1.4
5,411,883	-				+0.5
5,411,930	+				+0.2
5,411,934	+				-0.8
5,411,934	+				+0.2
5,411,993	+				+0.3
5,412,022	+				+0.9
5,412,023	-				+0.6
5,412,054	+				+1.2
5,412,054	+				-0.5
5,412,054	+				-0.3
5,412,055	-				+1.9
5,412,055	-				+0.1
5,412,055	-				+0.1
5,412,118	+				-0.7
5,412,118	+				-0.0
5,412,121	-				-0.4
5,412,121	-				+0.9
5,412,121	-				-2.6
5,412,137	-				+0.5
5,412,170	+				+0.1
5,412,282	+		Echvi_4528	0.14	-0.8
5,412,282	+		Echvi_4528	0.14	-0.9
5,412,283	-		Echvi_4528	0.14	+0.4
5,412,311	+		Echvi_4528	0.17	-0.5
5,412,311	+		Echvi_4528	0.17	+0.5
5,412,328	+		Echvi_4528	0.19	-0.1
5,412,328	+		Echvi_4528	0.19	+0.2
5,412,369	-				+2.9
5,412,447	+		Echvi_4528	0.32	+0.4
5,412,447	+		Echvi_4528	0.32	+1.3
5,412,447	+		Echvi_4528	0.32	+0.1
5,412,461	-		Echvi_4528	0.34	+0.6
5,412,461	-		Echvi_4528	0.34	+0.5
5,412,505	+		Echvi_4528	0.39	-1.1
5,412,505	+		Echvi_4528	0.39	+0.2
5,412,506	-		Echvi_4528	0.39	-1.3
5,412,506	-		Echvi_4528	0.39	-2.2
5,412,509	-		Echvi_4528	0.39	-0.6
5,412,514	-		Echvi_4528	0.40	-0.6
5,412,522	+		Echvi_4528	0.41	+0.3
5,412,594	+		Echvi_4528	0.49	-0.9
5,412,594	+		Echvi_4528	0.49	-2.1
5,412,594	+		Echvi_4528	0.49	+1.0
5,412,594	+		Echvi_4528	0.49	+0.9
5,412,594	+		Echvi_4528	0.49	-0.5
5,412,594	+		Echvi_4528	0.49	-0.3
5,412,594	+		Echvi_4528	0.49	+0.3
5,412,594	+				+2.3
5,412,595	-		Echvi_4528	0.49	+1.9
5,412,595	-		Echvi_4528	0.49	-0.5
5,412,595	-		Echvi_4528	0.49	-0.8
5,412,595	-		Echvi_4528	0.49	+1.3
5,412,595	-		Echvi_4528	0.49	+0.1
5,412,596	+				+0.9
5,412,596	+		Echvi_4528	0.49	+1.0
5,412,596	+		Echvi_4528	0.49	+1.9
5,412,597	-		Echvi_4528	0.49	+0.9
5,412,597	-		Echvi_4528	0.49	+1.7
5,412,597	-		Echvi_4528	0.49	-0.5
5,412,598	+		Echvi_4528	0.49	+0.3
5,412,599	-		Echvi_4528	0.49	+1.1
5,412,599	-		Echvi_4528	0.49	+0.6
5,412,599	-		Echvi_4528	0.49	+0.4
5,412,602	+		Echvi_4528	0.50	+0.5
5,412,603	-		Echvi_4528	0.50	+0.1
5,412,603	-		Echvi_4528	0.50	+0.6
5,412,603	-		Echvi_4528	0.50	-2.5
5,412,675	+		Echvi_4528	0.58	+0.6
5,412,676	-		Echvi_4528	0.58	+0.7
5,412,796	-		Echvi_4528	0.71	+2.9
5,412,869	-		Echvi_4528	0.79	-1.3
5,413,023	+				+0.5
5,413,024	-				+0.4
5,413,024	-				+0.3
5,413,054	+				+0.5
5,413,054	+				+0.1
5,413,066	+				+1.4
5,413,067	-				+0.1
5,413,067	-				-1.7
5,413,113	+				+0.5
5,413,114	-				+0.6
5,413,114	-				-0.1
5,413,146	+				-1.3
5,413,154	+				+0.4
5,413,155	-				+0.7
5,413,195	+				-0.7
5,413,241	+				-1.6
5,413,241	+				-0.1
5,413,252	+				+0.4
5,413,252	+				-0.1
5,413,253	-				+0.5
5,413,253	-				-0.9
5,413,274	-				-0.5
5,413,305	+		Echvi_4529	0.13	-0.3
5,413,305	+		Echvi_4529	0.13	-0.2
5,413,306	-		Echvi_4529	0.13	-1.5
5,413,306	-		Echvi_4529	0.13	-0.7
5,413,310	-		Echvi_4529	0.13	-0.8
5,413,326	-		Echvi_4529	0.15	-1.7
5,413,446	-		Echvi_4529	0.29	+0.4
5,413,622	+		Echvi_4529	0.49	+0.7
5,413,622	+		Echvi_4529	0.49	+0.1
5,413,622	+		Echvi_4529	0.49	-0.2
5,413,622	+		Echvi_4529	0.49	-0.3
5,413,622	+		Echvi_4529	0.49	-1.0
5,413,622	+		Echvi_4529	0.49	+0.9
5,413,622	+		Echvi_4529	0.49	-1.5
5,413,623	-		Echvi_4529	0.49	-1.7
5,413,623	-		Echvi_4529	0.49	-1.3
5,413,623	-		Echvi_4529	0.49	+0.9
5,413,623	-		Echvi_4529	0.49	+0.2
5,413,623	-		Echvi_4529	0.49	-0.2
5,413,623	-		Echvi_4529	0.49	+0.1
5,413,697	+		Echvi_4529	0.57	-0.8
5,413,698	-		Echvi_4529	0.58	-0.6
5,413,778	-		Echvi_4529	0.67	-1.2
5,413,838	+		Echvi_4529	0.74	+1.2
5,413,843	-		Echvi_4529	0.74	+0.9
5,413,935	-		Echvi_4529	0.85	+0.9
5,413,948	+		Echvi_4529	0.86	-0.2
5,413,997	+				+0.2
5,414,003	+				+0.5
5,414,003	+				-0.4
5,414,003	+				-0.3
5,414,015	+				-0.3
5,414,049	-				-0.3